Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8005646.1

Orthogroup ID

OG0010483

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 529

Gene Structure 529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8005646.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 223 bp

aaatactggagatttagatgagtccttccatgaaaacttccagatcaaagaattaactcaagatgagaagaaaccgccagtagttggcaataatcatgaggagttgcaggttattgatgctaaaatccggcagtggtcaaagggaaaggaaggaaacatacgctcactgctcactactatgcaacatgtgagcatttttgtcattccgtctttgaagacgacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016043 GO:0016192 GO:0019750 GO:0030029 GO:0030036 GO:0031982 GO:0043226 GO:0043227 GO:0044424 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071840 GO:0097435 GO:0098657 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

74

Amino Acids

8.46

Weight (kDa)

5.86

Isoelectric Point (pI)

28.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75100
fragaria_vesca	FvH4_2g40090
malus_domestica	MD08G1032500.v1.1 MD15G1029200.v1.1
prunus_persica	Prupe.1G382200_v2.0.a1 Prupe.1G382200_v2.0.a1
pyrus_communis	pycom08g02580 pycom15g02590
rosa_chinensis	RchiOBHm_Chr6g0300651
rosa_laevigata	RLG00000011314
rosa_multiflora	Rmu_co8005646.1_g000001 Rmu_sc0004226.1_g000015 Rmu_sc0014374.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167530
rosa_rugosa	Rorug06G0298200
rosa_samantha	Rh6AG410800 Rh6BG418000 Rh6CG425500 Rh6DG410900
rosa_wichuraiana	Rw0G002200 Rw6G035940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	98
AccB7I	CCANNNNNTGG	1 cut(s)	84
AciI	CCGC	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	84
AflIII	ACRYGT	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	215
BarI	GAAGNNNNNNTAC	2 cut(s)	142, 174
BfuAI	ACCTGC	1 cut(s)	98
BmsI	GCATC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	2 cut(s)	11, 78
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseNI	ACTGG	2 cut(s)	11, 78
BseRI	GAGGAG	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	95
BspMI	ACCTGC	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	11, 78
BssMI	GATC	1 cut(s)	43
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	189
BtsI	GCAGTG	2 cut(s)	138, 165
BtsIMutI	CAGTG	2 cut(s)	138, 165
BveI	ACCTGC	1 cut(s)	98
CciI	TCATGA	1 cut(s)	95
CviAII	CATG	3 cut(s)	30, 96, 186
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
FaeI	CATG	3 cut(s)	33, 99, 189
FaiI	YATR	5 cut(s)	31, 97, 159, 180, 187
FatI	CATG	3 cut(s)	29, 95, 185
GsuI	CTGGAG	1 cut(s)	28
HapII	CCGG	1 cut(s)	128
Hin1II	CATG	3 cut(s)	33, 99, 189
HinfI	GANTC	1 cut(s)	21
HpaII	CCGG	1 cut(s)	128
Hpy188III	TCNNGA	3 cut(s)	41, 60, 96
HpyAV	CCTTC	2 cut(s)	35, 144
HpyCH4V	TGCA	2 cut(s)	107, 182
Hsp92II	CATG	3 cut(s)	33, 99, 189
Kzo9I	GATC	1 cut(s)	43
LpnPI	CCDG	4 cut(s)	54, 91, 93, 141
LweI	GCATC	1 cut(s)	107
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	1 cut(s)	80
MluCI	AATT	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	30
MnlI	CCTC	1 cut(s)	92
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	1 cut(s)	128
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	3 cut(s)	33, 99, 189
NspI	RCATGY	1 cut(s)	189
PagI	TCATGA	1 cut(s)	95
PciI	ACATGT	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	84
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PscI	ACATGT	1 cut(s)	185
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	30
SetI	ASST	1 cut(s)	112
SfaNI	GCATC	1 cut(s)	107
SgeI	CNNG	9 cut(s)	19, 42, 53, 72, 90, 108, 120, 140, 198
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	1 cut(s)	51
SsiI	CCGC	1 cut(s)	75
TasI	AATT	1 cut(s)	51
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	2 cut(s)	138, 172
TspDTI	ATGAA	1 cut(s)	46
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	2 cut(s)	138, 172
Van91I	CCANNNNNTGG	1 cut(s)	84
XceI	RCATGY	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.