Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0015005

Physical Location & Seq

Genomic Coordinates Reverse (-)

11612140 .. 11616315

Gene Structure 4176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011677

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2460 bp

ATGGAGCTACCGGAGTTGCCCGAGTGCCCAGTGTGTCTGCAAAACTACGACGGCGCGTCCACGATTCCGCGCGTGCTGGGTTGCGGCCACTCGGCTTGCGAGGTCTGCCTGGCGAAGCTGCCCCACCGCTACCCGGAGACCATTCGCTGCCCGGCGTGTACTCAGCTCGTCAAGTACCCTCAGAACGGCGCCGCCGCGCTGCCCAAGAACATCGACCTCCTCTCACTCTCTCTCTCCCTCTCTCCGCCGCAAAACCCTAACCCTAATTCCGACGATCCCCGGAAGCCACGTCAGCAATCCGCCGATGATTTAGAAGTGTTTAATTTCCTGCCGCGGCTATGGTCCGACGAGTTTTATAGTGCTTGGAAGGACTGGGTTGTTGGGTACGACGCCGTTGTGGTCGAAACGGAAGAAAGGGCTCGGCTTTGTGATTCTGGTGCTGCTGTGGGGTTAGTGCAAGTCGGGTTTTTGGAGGGATTGGGTGATTCTAAATTTGAGTTTAGCTACAATGCGAGGGTTATGAAGTGTTTGAGTGGAATGAGAGAGGAGGAGAGGAGAGAATTGGGCTTGTTGCTGAGAGGTTCTGGGAGGCAGTGTAGGAGGATAGGGAAGGTTTATGGGTTTTGGGGTAATGTGGAAGATGCGGTTTTGTATTTAGTGTGTGAGAGCCAGAATGGGAGGTTTGAGGAGAAGTTGAGGGGTTTGAGAAATGGGGATGGGTTTGGGAGAGATGGGTTGGGTGGTTTTGGTGTGATTGGTATGGAGGTGTGTGAGGCGATGATGGGGTTGCATTCGGAGGGGTTTTTTGGTGGTGGTTTTGGTGTTTCGTGTTTTGGTTTTGATGATTTTGGTCATTTTTTTGTGGATTTGAATGAGGTGTTGGTGATGGGAAGGAAGGTTTGGACAAGTGTTGGGGATAGTGTTGGTGGTAGAAAGGGAATTGGTGCTGAAGAAATGGAAGTGATGTTTGGGAGTTTATTGAAAGATGAGGCTTTTGTTAGCATGGAGGTGTTGTTTGAGGTGTTGAAGAAAGAGGGCATTGCAGTGGAATGTGAGAGCTCGAAACATCCGGTTGGGTATGGCTCGGATGTTTGGTCATTAGCTTGTGTTTTGTTGAGTCTGCTTCTTGGGAAAGAGTTCAGTGAAGAGATTGGAAATATGAATCATATTTGCGATCATTCAACGTATGCAAGTTGGATTGAAAGAGTTGGTGATTTGCTGGACAGTAGATTGGGTTCTGAATATGCATCACTGAGGGTGACTCTCTGTAAATGTTTGAATTATGATCCAGCAAGTCGTCCACCAGTGATTGACGTTATGATTTGCATTAGGGAACTGATTATTAAACCTCAATATGATATCATGGCCGTTTTGGAGAGACCGGTTAAGGAGAACAGCACAAATTGTTGCTTGATTCTGGGGGAGCTCTGTCAGATGCCCAAGCAAATGTCAGAAACACAGAAAGAAAATGAGTTGCAGGCAAAAGAAGTTGGTGGAGGAGCAGACTTTGATCAGGTTGATGAGGGGAGGTCTGAGAATGGTTTTGTTGATGGACTCACAGAGGGAAAGGTCAAATCTAAAGTTCTGCAGGGCCATCGTGACTCTATCACAGCCTTAGCTGTTGGAGGAGAATTTCTATTTAGCTCCTCATTTGACAAAACCATCCATGTGTGGTCTTTGCAGGACTTCTGTCATGTACATACATTTAAAGGCCATGAGCATACCATTAAGGCTCTAATTTATGTAGATGAAGAGAAACCCTTGTGCATAAGTGGTGACAGTGGAGGTGGCATATTTATCTGGAGTACATGTTCCCCTCTTGGGCAAGAACCATTAAAGATACTGTATGAGCAGAAAGATTGGCGCTTTAGTGGTATTCATGCCTTGGCCTTTAGAACTGGATATATTTATACCGGCAGTGGAGACAGAACAGTAAAAGTATGGTCTATGCAGGGTGGCACCATATCATGCACTATGTCGGGTCATAAATCAGTAGTTTCAACACTTGCAGTTTGTGATAGTGTTCTGTATAGTGGCAGTTGGGATGGAACCATCCGATTATGGAGTCTCAGCGATCACAGTCCTTTGGCAGTACTAGGGGAAGACACATCTGGAACTGTGGTTTCTGTCTTATCTCTTGCTGCTGACAGACATGTGCTCATTGCAACCCATGAAAATGGATGTCTAAAGGTCTGGAGAAATGATGTGTTTATGAAATCCATTAAAATGCACAATGGTGCAGTATTTGCTACTGGCCTGGATGGAAAATGGCTTTTCACAGGAGGGTTGGATAAAACTGTCAATGTCCAGGAATGGTCTGGTGATGAGTTTCAAACAGATTTCAGACCTATTGGATCCATCCCCTGTGATTCTGTCATTACTACTTTGTTGTGCTGGCAAGGAAAGCTTTTCGTTGGATATGCTAATAGGAATATCATGGTGTTTTACTATGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0006996 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0009657 GO:0009658 GO:0009987 GO:0010109 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0031323 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW WD40 zf-RING_UBOX

Protein Analysis

820

Amino Acids

90.33

Weight (kDa)

5.18

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_UBOX	PF13445	9 - 51	6.6e-07	RING-type zinc-finger
WDR55	PF24796	519 - 732	2.1e-13	WDR55
Beta-prop_SCAP	PF24017	526 - 602	1.6e-06	SCAP Beta-propeller
WD40_Gbeta	PF25391	526 - 688	4.9e-09	G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st	PF25173	528 - 595	2.7e-08	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	529 - 747	1.7e-24	WDR5 beta-propeller domain
WD40_Prp19	PF24814	624 - 735	2.4e-09	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	633 - 748	1.7e-06	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	635 - 769	3.3e-14	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	635 - 732	1.2e-08	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	635 - 696	5.3e-08	WDHD1 first WD40 domain
WD40_CDC20-Fz	PF24807	635 - 767	1.7e-06	CDC20/Fizzy WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21651
fragaria_vesca	FvH4_2g27740
prunus_persica	Prupe.1G490500_v2.0.a1 Prupe.1G490500_v2.0.a1 Prupe.1G490500_v2.0.a1
pyrus_communis	pycom15g30580
rosa_chinensis	RchiOBHm_Chr6g0296591
rosa_laevigata	RLG00000011677
rosa_multiflora	Rmu_sc0001741.1_g000020
rosa_roxburghii	Rroxscaffold_6G00390100 Rroxscaffold_7G00178750
rosa_rugosa	Rorug06G0263600
rosa_samantha	Rh6BG383500 Rh6CG388600 Rh6DG376000
rosa_wichuraiana	Rw6G032710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	188, 1958
AccII	CGCG	5 cut(s)	56, 70, 72, 197, 334
AclWI	GGATC	4 cut(s)	269, 1280, 2349, 2362
AcoI	YGGCCR	2 cut(s)	85, 1365
AcsI	RAATTY	2 cut(s)	491, 1631
AcuI	CTGAAG	1 cut(s)	969
AcyI	GRCGYC	2 cut(s)	189, 390
AfaI	GTAC	6 cut(s)	160, 176, 386, 1698, 1807, 2094
AfiI	CCNNNNNNNGG	3 cut(s)	133, 185, 1821
AflIII	ACRYGT	2 cut(s)	1808, 2152
AgeI	ACCGGT	1 cut(s)	1381
AgsI	TTSAA	8 cut(s)	871, 982, 1027, 1182, 1202, 1279, 2001, 2333
AhdI	GACNNNNNGTC	1 cut(s)	55
AjiI	CACGTC	1 cut(s)	290
AjnI	CCWGG	3 cut(s)	108, 2256, 2307
AjuI	GAANNNNNNNTTGG	6 cut(s)	863, 883, 895, 915, 951, 983
AleI	CACNNNNGTG	1 cut(s)	2235
AloI	GAACNNNNNNTCC	2 cut(s)	1795, 1827
Alw21I	GWGCWC	3 cut(s)	1061, 1428, 2160
Alw26I	GTCTC	4 cut(s)	131, 1372, 1917, 2072
AlwI	GGATC	4 cut(s)	269, 1280, 2349, 2362
Ama87I	CYCGRG	1 cut(s)	20
AoxI	GGCC	6 cut(s)	85, 1365, 1591, 1711, 1887, 2254
ApeKI	GCWGC	5 cut(s)	118, 147, 199, 440, 2141
ApoI	RAATTY	2 cut(s)	491, 1631
AsiGI	ACCGGT	1 cut(s)	1381
Asp700I	GAANNNNTTC	1 cut(s)	1136
AspLEI	GCGC	5 cut(s)	56, 72, 191, 199, 1866
AspS9I	GGNCC	2 cut(s)	342, 1591
AsuC2I	CCSGG	3 cut(s)	134, 152, 280
AsuHPI	GGTGA	6 cut(s)	494, 895, 1223, 1270, 1787, 2333
AvaI	CYCGRG	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	342
BaeGI	GKGCMC	1 cut(s)	29
BamHI	GGATCC	1 cut(s)	2354
BanI	GGYRCC	2 cut(s)	188, 1958
BanII	GRGCYC	3 cut(s)	421, 1061, 1428
BbsI	GAAGAC	1 cut(s)	2109
Bbv12I	GWGCWC	3 cut(s)	1061, 1428, 2160
BbvI	GCAGC	5 cut(s)	105, 134, 186, 427, 2128
BceAI	ACGGC	4 cut(s)	67, 202, 377, 1352
BcgI	CGANNNNNNTGC	2 cut(s)	1577, 1611
BciT130I	CCWGG	3 cut(s)	110, 2258, 2309
BclI	TGATCA	1 cut(s)	1510
BcnI	CCSGG	3 cut(s)	134, 152, 280
BcoDI	GTCTC	4 cut(s)	131, 1372, 1917, 2072
BfaI	CTAG	1 cut(s)	2096
BfmI	CTRYAG	1 cut(s)	1586
BfoI	RGCGCY	2 cut(s)	192, 1867
BmcAI	AGTACT	1 cut(s)	2094
Bme1390I	CCNGG	6 cut(s)	110, 134, 152, 280, 2258, 2309
Bme18I	GGWCC	1 cut(s)	342
BmeRI	GACNNNNNGTC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	20
BmgBI	CACGTC	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	342, 1591
BmiI	GGNNCC	4 cut(s)	190, 1960, 2050, 2356
BmrFI	CCNGG	6 cut(s)	110, 134, 152, 280, 2258, 2309
BmrI	ACTGGG	2 cut(s)	23, 382
BmsI	GCATC	3 cut(s)	631, 1256, 1425
BmuI	ACTGGG	2 cut(s)	23, 382
BoxI	GACNNNNGTC	1 cut(s)	1689
BpiI	GAAGAC	1 cut(s)	2109
BplI	GAGNNNNNCTC	2 cut(s)	1246, 1278
BpmI	CTGGAG	2 cut(s)	1822, 2215
Bpu10I	CCTNAGC	1 cut(s)	1615
BpuMI	CCSGG	3 cut(s)	134, 152, 280
BsaHI	GRCGYC	2 cut(s)	189, 390
BsaI	GGTCTC	2 cut(s)	131, 1372
BsaJI	CCNNGG	3 cut(s)	278, 332, 1884
BsaWI	WCCGGW	3 cut(s)	10, 1069, 1381
BsaXI	ACNNNNNCTCC	6 cut(s)	580, 610, 998, 1028, 1795, 1825
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 185, 1821
Bse118I	RCCGGY	2 cut(s)	1381, 1913
Bse1I	ACTGG	5 cut(s)	29, 377, 1304, 1903, 2257
Bse3DI	GCAATG	2 cut(s)	1038, 2160
BseBI	CCWGG	3 cut(s)	110, 2258, 2309
BseDI	CCNNGG	3 cut(s)	278, 332, 1884
BseGI	GGATG	9 cut(s)	721, 1066, 1093, 1662, 2050, 2052, 2186, 2266, 2358
BseLI	CCNNNNNNNGG	3 cut(s)	133, 185, 1821
BseMI	GCAATG	2 cut(s)	1038, 2160
BseMII	CTCAG	6 cut(s)	176, 194, 566, 1244, 1524, 2083
BseNI	ACTGG	5 cut(s)	29, 377, 1304, 1903, 2257
BseRI	GAGGAG	8 cut(s)	209, 560, 563, 568, 701, 1512, 1636, 1641
BseSI	GKGCMC	1 cut(s)	29
BseXI	GCAGC	5 cut(s)	105, 134, 186, 427, 2128
BseYI	CCCAGC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	2259
Bsh1236I	CGCG	5 cut(s)	56, 70, 72, 197, 334
BshFI	GGCC	6 cut(s)	87, 1367, 1593, 1713, 1889, 2256
BshNI	GGYRCC	2 cut(s)	188, 1958
BshTI	ACCGGT	1 cut(s)	1381
BsiHKAI	GWGCWC	3 cut(s)	1061, 1428, 2160
BsiHKCI	CYCGRG	1 cut(s)	20
BsiSI	CCGG	7 cut(s)	11, 134, 152, 280, 1070, 1382, 1914
BslI	CCNNNNNNNGG	3 cut(s)	133, 185, 1821
BsmAI	GTCTC	4 cut(s)	131, 1372, 1917, 2072
BsmI	GAATGC	1 cut(s)	790
BsnI	GGCC	6 cut(s)	87, 1367, 1593, 1713, 1889, 2256
Bso31I	GGTCTC	2 cut(s)	131, 1372
BsoBI	CYCGRG	1 cut(s)	20
Bsp1286I	GDGCHC	5 cut(s)	29, 421, 1061, 1428, 2160
Bsp1407I	TGTACA	1 cut(s)	1696
Bsp143I	GATC	6 cut(s)	274, 1174, 1285, 1510, 2074, 2354
BspANI	GGCC	6 cut(s)	87, 1367, 1593, 1713, 1889, 2256
BspCNI	CTCAG	6 cut(s)	175, 193, 567, 1245, 1525, 2082
BspFNI	CGCG	5 cut(s)	56, 70, 72, 197, 334
BspLI	GGNNCC	4 cut(s)	190, 1960, 2050, 2356
BspMAI	CTGCAG	1 cut(s)	1590
BspPI	GGATC	4 cut(s)	269, 1280, 2349, 2362
BspT107I	GGYRCC	2 cut(s)	188, 1958
BspTNI	GGTCTC	2 cut(s)	131, 1372
BsrDI	GCAATG	2 cut(s)	1038, 2160
BsrFI	RCCGGY	2 cut(s)	1381, 1913
BsrGI	TGTACA	1 cut(s)	1696
BsrI	ACTGG	5 cut(s)	29, 377, 1304, 1903, 2257
BssAI	RCCGGY	2 cut(s)	1381, 1913
BssECI	CCNNGG	3 cut(s)	278, 332, 1884
BssMI	GATC	6 cut(s)	274, 1174, 1285, 1510, 2074, 2354
BssNI	GRCGYC	2 cut(s)	189, 390
BssT1I	CCWWGG	1 cut(s)	1884
Bst2UI	CCWGG	3 cut(s)	110, 2258, 2309
Bst4CI	ACNGT	7 cut(s)	1226, 1781, 1845, 1933, 2081, 2119, 2299
Bst6I	CTCTTC	2 cut(s)	1140, 1746
BstACI	GRCGYC	2 cut(s)	189, 390
BstAPI	GCANNNNNTGC	1 cut(s)	2246
BstAUI	TGTACA	1 cut(s)	1696
BstC8I	GCNNGC	4 cut(s)	74, 97, 1479, 2396
BstDEI	CTNAG	7 cut(s)	162, 180, 575, 1253, 1533, 1615, 2069
BstDSI	CCRYGG	1 cut(s)	332
BstF5I	GGATG	9 cut(s)	721, 1066, 1093, 1662, 2050, 2052, 2186, 2266, 2358
BstFNI	CGCG	5 cut(s)	56, 70, 72, 197, 334
BstH2I	RGCGCY	2 cut(s)	192, 1867
BstHHI	GCGC	5 cut(s)	56, 72, 191, 199, 1866
BstKTI	GATC	6 cut(s)	277, 1177, 1288, 1513, 2077, 2357
BstMAI	GTCTC	4 cut(s)	131, 1372, 1917, 2072
BstMBI	GATC	6 cut(s)	274, 1174, 1285, 1510, 2074, 2354
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 292, 2246, 2404
BstNI	CCWGG	3 cut(s)	110, 2258, 2309
BstNSI	RCATGY	2 cut(s)	1812, 2156
BstPAI	GACNNNNGTC	1 cut(s)	1689
BstSCI	CCNGG	6 cut(s)	108, 132, 150, 278, 2256, 2307
BstSFI	CTRYAG	1 cut(s)	1586
BstSLI	GKGCMC	1 cut(s)	29
BstUI	CGCG	5 cut(s)	56, 70, 72, 197, 334
BstV1I	GCAGC	5 cut(s)	105, 134, 186, 427, 2128
BstV2I	GAAGAC	1 cut(s)	2109
BstX2I	RGATCY	1 cut(s)	2354
BstXI	CCANNNNNNTGG	1 cut(s)	2177
BstYI	RGATCY	1 cut(s)	2354
BsuRI	GGCC	6 cut(s)	87, 1367, 1593, 1713, 1889, 2256
BtgI	CCRYGG	1 cut(s)	332
BtgZI	GCGATG	1 cut(s)	791
BtrI	CACGTC	1 cut(s)	290
BtsCI	GGATG	9 cut(s)	721, 1066, 1093, 1662, 2050, 2052, 2186, 2266, 2358
BtsI	GCAGTG	3 cut(s)	599, 1050, 1924
BtsIMutI	CAGTG	8 cut(s)	36, 599, 1050, 1147, 1250, 1311, 1786, 1924
Cac8I	GCNNGC	4 cut(s)	74, 97, 1479, 2396
CfoI	GCGC	5 cut(s)	56, 72, 191, 199, 1866
Cfr10I	RCCGGY	2 cut(s)	1381, 1913
Cfr13I	GGNCC	2 cut(s)	342, 1591
Cfr42I	CCGCGG	1 cut(s)	335
CseI	GACGC	2 cut(s)	45, 398
Csp6I	GTAC	6 cut(s)	159, 175, 385, 1697, 1806, 2093
CspAI	ACCGGT	1 cut(s)	1381
CspCI	CAANNNNNGTGG	2 cut(s)	77, 112
CviQI	GTAC	6 cut(s)	159, 175, 385, 1697, 1806, 2093
DdeI	CTNAG	7 cut(s)	162, 180, 575, 1253, 1533, 1615, 2069
DinI	GGCGCC	1 cut(s)	190
DpnI	GATC	6 cut(s)	276, 1176, 1287, 1512, 2076, 2356
DpnII	GATC	6 cut(s)	274, 1174, 1285, 1510, 2074, 2354
DraI	TTTAAA	1 cut(s)	1708
DriI	GACNNNNNGTC	1 cut(s)	55
EaeI	YGGCCR	2 cut(s)	85, 1365
Eam1104I	CTCTTC	2 cut(s)	1140, 1746
Eam1105I	GACNNNNNGTC	1 cut(s)	55
EarI	CTCTTC	2 cut(s)	1140, 1746
EciI	GGCGGA	2 cut(s)	234, 289
Ecl136II	GAGCTC	2 cut(s)	1059, 1426
Eco130I	CCWWGG	1 cut(s)	1884
Eco24I	GRGCYC	3 cut(s)	421, 1061, 1428
Eco31I	GGTCTC	2 cut(s)	131, 1372
Eco32I	GATATC	1 cut(s)	1360
Eco47I	GGWCC	1 cut(s)	342
Eco53kI	GAGCTC	2 cut(s)	1059, 1426
Eco57I	CTGAAG	1 cut(s)	969
Eco88I	CYCGRG	1 cut(s)	20
EcoICRI	GAGCTC	2 cut(s)	1059, 1426
EcoRII	CCWGG	3 cut(s)	108, 2256, 2307
EcoRV	GATATC	1 cut(s)	1360
EcoT14I	CCWWGG	1 cut(s)	1884
EcoT22I	ATGCAT	1 cut(s)	1249
EcoT38I	GRGCYC	3 cut(s)	421, 1061, 1428
EgeI	GGCGCC	1 cut(s)	190
EheI	GGCGCC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	1884
FalI	AAGNNNNNCTT	2 cut(s)	2391, 2423
FbaI	TGATCA	1 cut(s)	1510
FokI	GGATG	9 cut(s)	728, 1053, 1100, 1649, 2039, 2057, 2193, 2273, 2345
FriOI	GRGCYC	3 cut(s)	421, 1061, 1428
FspBI	CTAG	1 cut(s)	2096
GlaI	GCGC	5 cut(s)	55, 71, 190, 198, 1865
GsaI	CCCAGC	1 cut(s)	80
GsuI	CTGGAG	2 cut(s)	1822, 2215
HaeII	RGCGCY	2 cut(s)	192, 1867
HaeIII	GGCC	6 cut(s)	87, 1367, 1593, 1713, 1889, 2256
HapII	CCGG	7 cut(s)	11, 134, 152, 280, 1070, 1382, 1914
HgaI	GACGC	2 cut(s)	45, 398
HhaI	GCGC	5 cut(s)	56, 72, 191, 199, 1866
Hin1I	GRCGYC	2 cut(s)	189, 390
Hin6I	GCGC	5 cut(s)	54, 70, 189, 197, 1864
HinP1I	GCGC	5 cut(s)	54, 70, 189, 197, 1864
HindIII	AAGCTT	1 cut(s)	2405
HpaII	CCGG	7 cut(s)	11, 134, 152, 280, 1070, 1382, 1914
HphI	GGTGA	6 cut(s)	494, 895, 1223, 1270, 1787, 2333
Hpy166II	GTNNAC	3 cut(s)	60, 159, 1301
Hpy188III	TCNNGA	4 cut(s)	1598, 1801, 2112, 2194
Hpy8I	GTNNAC	3 cut(s)	60, 159, 1301
Hpy99I	CGWCG	4 cut(s)	53, 275, 350, 392
HpyAV	CCTTC	4 cut(s)	361, 604, 885, 889
HpyCH4III	ACNGT	7 cut(s)	1226, 1781, 1845, 1933, 2081, 2119, 2299
HpyCH4IV	ACGT	3 cut(s)	289, 1184, 1314
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 292, 2246, 2404
HpyF3I	CTNAG	7 cut(s)	162, 180, 575, 1253, 1533, 1615, 2069
HpySE526I	ACGT	3 cut(s)	289, 1184, 1314
Hsp92I	GRCGYC	2 cut(s)	189, 390
HspAI	GCGC	5 cut(s)	54, 70, 189, 197, 1864
KasI	GGCGCC	1 cut(s)	188
Ksp22I	TGATCA	1 cut(s)	1510
KspI	CCGCGG	1 cut(s)	335
Kzo9I	GATC	6 cut(s)	274, 1174, 1285, 1510, 2074, 2354
LmnI	GCTCC	4 cut(s)	4, 1423, 1499, 1649
Lsp1109I	GCAGC	5 cut(s)	105, 134, 186, 427, 2128
LweI	GCATC	3 cut(s)	631, 1256, 1425
MaeI	CTAG	1 cut(s)	2096
MaeII	ACGT	3 cut(s)	289, 1184, 1314
MaeIII	GTNAC	3 cut(s)	1258, 1598, 1775
MalI	GATC	6 cut(s)	276, 1176, 1287, 1512, 2076, 2356
MboI	GATC	6 cut(s)	274, 1174, 1285, 1510, 2074, 2354
MboII	GAAGA	7 cut(s)	422, 650, 962, 1039, 1157, 1763, 2114
MflI	RGATCY	1 cut(s)	2354
MhlI	GDGCHC	5 cut(s)	29, 421, 1061, 1428, 2160
MluCI	AATT	9 cut(s)	265, 322, 491, 560, 939, 1279, 1402, 1631, 1737
Mly113I	GGCGCC	1 cut(s)	189
MlyI	GAGTC	5 cut(s)	1126, 1255, 1548, 1595, 2074
MmeI	TCCRAC	6 cut(s)	294, 369, 1175, 1603, 2268, 2395
Mph1103I	ATGCAT	1 cut(s)	1249
MroXI	GAANNNNTTC	1 cut(s)	1136
MseI	TTAA	7 cut(s)	321, 1344, 1386, 1707, 1728, 1835, 2223
MslI	CAYNNNNRTG	6 cut(s)	1007, 1043, 1667, 2175, 2225, 2235
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	7 cut(s)	11, 134, 152, 280, 1070, 1382, 1914
MspR9I	CCNGG	6 cut(s)	110, 134, 152, 280, 2258, 2309
Mva1269I	GAATGC	1 cut(s)	790
MvaI	CCWGG	3 cut(s)	110, 2258, 2309
MvnI	CGCG	5 cut(s)	56, 70, 72, 197, 334
MwoI	GCNNNNNNNGC	4 cut(s)	105, 292, 2246, 2404
NarI	GGCGCC	1 cut(s)	189
NciI	CCSGG	3 cut(s)	134, 152, 280
NdeII	GATC	6 cut(s)	274, 1174, 1285, 1510, 2074, 2354
NlaIV	GGNNCC	4 cut(s)	190, 1960, 2050, 2356
NmeAIII	GCCGAG	2 cut(s)	71, 400
NmuCI	GTSAC	3 cut(s)	1258, 1598, 1775
NsiI	ATGCAT	1 cut(s)	1249
NspI	RCATGY	2 cut(s)	1812, 2156
OliI	CACNNNNGTG	1 cut(s)	2235
PciI	ACATGT	2 cut(s)	1808, 2152
PctI	GAATGC	1 cut(s)	790
PdmI	GAANNNNTTC	1 cut(s)	1136
PfeI	GAWTC	6 cut(s)	64, 431, 485, 1162, 1414, 2369
PfoI	TCCNGGA	1 cut(s)	2307
PinAI	ACCGGT	1 cut(s)	1381
PleI	GAGTC	5 cut(s)	1125, 1255, 1548, 1595, 2073
PluTI	GGCGCC	1 cut(s)	192
PpsI	GAGTC	5 cut(s)	1125, 1255, 1548, 1595, 2073
PscI	ACATGT	2 cut(s)	1808, 2152
PshAI	GACNNNNGTC	1 cut(s)	1689
Psp124BI	GAGCTC	2 cut(s)	1061, 1428
Psp6I	CCWGG	3 cut(s)	108, 2256, 2307
PspFI	CCCAGC	1 cut(s)	76
PspGI	CCWGG	3 cut(s)	108, 2256, 2307
PspN4I	GGNNCC	4 cut(s)	190, 1960, 2050, 2356
PspPI	GGNCC	2 cut(s)	342, 1591
PsrI	GAACNNNNNNTAC	2 cut(s)	1219, 1251
PstI	CTGCAG	1 cut(s)	1590
PsuI	RGATCY	1 cut(s)	2354
RsaI	GTAC	6 cut(s)	160, 176, 386, 1698, 1807, 2094
RsaNI	GTAC	6 cut(s)	159, 175, 385, 1697, 1806, 2093
RseI	CAYNNNNRTG	6 cut(s)	1007, 1043, 1667, 2175, 2225, 2235
SacI	GAGCTC	2 cut(s)	1061, 1428
SacII	CCGCGG	1 cut(s)	335
SaqAI	TTAA	7 cut(s)	321, 1344, 1386, 1707, 1728, 1835, 2223
Sau3AI	GATC	6 cut(s)	274, 1174, 1285, 1510, 2074, 2354
Sau96I	GGNCC	2 cut(s)	342, 1591
ScaI	AGTACT	1 cut(s)	2094
SchI	GAGTC	5 cut(s)	1126, 1255, 1548, 1595, 2074
ScrFI	CCNGG	6 cut(s)	110, 134, 152, 280, 2258, 2309
SduI	GDGCHC	5 cut(s)	29, 421, 1061, 1428, 2160
SfaNI	GCATC	3 cut(s)	631, 1256, 1425
SfcI	CTRYAG	1 cut(s)	1586
SfoI	GGCGCC	1 cut(s)	190
Sfr303I	CCGCGG	1 cut(s)	335
SgrBI	CCGCGG	1 cut(s)	335
SinI	GGWCC	1 cut(s)	342
SmiMI	CAYNNNNRTG	6 cut(s)	1007, 1043, 1667, 2175, 2225, 2235
Sse9I	AATT	9 cut(s)	265, 322, 491, 560, 939, 1279, 1402, 1631, 1737
SspDI	GGCGCC	1 cut(s)	188
SspMI	CTAG	1 cut(s)	2096
SstI	GAGCTC	2 cut(s)	1061, 1428
StyD4I	CCNGG	6 cut(s)	108, 132, 150, 278, 2256, 2307
StyI	CCWWGG	1 cut(s)	1884
TaaI	ACNGT	7 cut(s)	1226, 1781, 1845, 1933, 2081, 2119, 2299
TaiI	ACGT	3 cut(s)	292, 1187, 1317
TaqI	TCGA	3 cut(s)	213, 402, 1061
TasI	AATT	9 cut(s)	265, 322, 491, 560, 939, 1279, 1402, 1631, 1737
TatI	WGTACW	4 cut(s)	158, 1696, 1805, 2092
TauI	GCSGC	6 cut(s)	87, 194, 197, 250, 334, 337
TfiI	GAWTC	6 cut(s)	64, 431, 485, 1162, 1414, 2369
Tru1I	TTAA	7 cut(s)	321, 1344, 1386, 1707, 1728, 1835, 2223
Tru9I	TTAA	7 cut(s)	321, 1344, 1386, 1707, 1728, 1835, 2223
TscAI	CASTG	8 cut(s)	36, 599, 1050, 1147, 1257, 1311, 1786, 1924
TseFI	GTSAC	3 cut(s)	1258, 1598, 1775
TseI	GCWGC	5 cut(s)	118, 147, 199, 440, 2141
Tsp45I	GTSAC	3 cut(s)	1258, 1598, 1775
TspDTI	ATGAA	6 cut(s)	536, 1175, 1764, 1868, 2187, 2228
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	8 cut(s)	36, 599, 1050, 1147, 1257, 1311, 1786, 1924
VpaK11BI	GGWCC	1 cut(s)	342
XapI	RAATTY	2 cut(s)	491, 1631
XceI	RCATGY	2 cut(s)	1812, 2156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2315
XmnI	GAANNNNTTC	1 cut(s)	1136
XspI	CTAG	1 cut(s)	2096
ZrmI	AGTACT	1 cut(s)	2094
Zsp2I	ATGCAT	1 cut(s)	1249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.