Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001741.1

Orthogroup ID

OG0015005

Physical Location & Seq

Genomic Coordinates Reverse (-)

110738 .. 118074

Gene Structure 7337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001741.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4563 bp

atggagccaccggagttgccggagtgcccggtgtgtctgcagaactacgacggcgcgtcgacgattccgcgcgtgctgggttgcggccactcggcgtgcgaggtgtgcctggcgaagctgccccaccgctacccggagacgattcgctgcccggcgtgtactcagctcgtcaagtaccctcagaacggcgccgccgcgctgcccaagaacatcgaccttctctcgctctctctctccctctctccgccgcaaaaccctaaccctaattccgacgctccccggaagcgacgtcagcaatccgccgatgatttagaagtgtttaatttcctgccgcggctatggtccgacgagttttatagtgcttggaaggactgggttgttgggtacgacgccgttttggtcgaaacggaagaaagggctcggctttgtgattctggtgctactgtggggttagttccagttgggtttttggagagattgggtgattctaaatttgagtttagctacaatgtgagggttatgaagtgtttgagtggaatgagagaggaggagaggagagaattgggtttgttgctgagaggttctgggaggcagtgtaggagggtagggaaggtttatgggttttggggaaatgtggaagatggggttttgtatttagtgtgtgagagccagagtgggaggtttgaggagaagttgaggggtttgagaaatggggatgggtttgggagagatgggttgggtggttttggtgtgattggtatggaggtgtgtgaggcggtgatggggttgcattcggaggggtttgttggtggtggttttggtgtttcgtgttttggtttcgatgattttggtcatgtttttgtggatttgaatgaggtgttggtgatgggaaggaaggtttggacaagtgttggggatagtgttggtgatagaaagggaattggtgctgaagaaatgggagtgatgtttggcagtttattgaaagatggggcttttgttagcatggaggtgttgtttgaggtgttgaagaaagagggcattgcagtggaatgtgagagctcgaaatatatggttgggtatggctcggatgtttggtcattagcttgtgttttgctcagtctgcttcttgggaaagagttcagtgaagagattggaaatatgaatcatatttgcgatcattcaacgtatgcaagttggattgaaagagttggtgatttgctggacagtagattgggttctgaatatgcatcactgagggtgactctctgtaaatgtttgaattatgatccagcaagtcgtccactagtgattgatgttatgatttgcattagggaactgattattaaacctcaatatgatatcatggccggtttggagagaccggtaaaggagaacagcaaaagttgttgcttgattctgggggagctctgtcagatgcccaagaaaatgtcagaaacacagaaagaacatgagttcaagtaccctcagaacggcgccgccgcgctgcccaagaacatcgaccttctctcgctctctctctccctctctcccccgcaagaccctaaccctaattccgacgctccccggaagcgacgtcagcaatccgccgatgatttagaagtgtttaatttcctgccgcggctatggtccgacgagttttatagtgcttggaaggactgggttgttgggtacgacgccgttttggtcgaaactgaagaaagggctcggctttgtgattctggtgctgctgtggggttagttcaagttgggtttttggagaggttgggtgattctaaatttgagtttagctacaatgtgagggttatgaagtgtttgagtcgaatgagagaggaggagaggagagaattgggtttgttgctgagaggttctgggaggcagtgtaggaggatagggagggtttatgggttttggggaaatgtggaagatggggttttgtatttagtgtgtgagagccagagtgggacgtttgaggagaagttgaggggtttgagaaatggggatgggtttgggagagatgggttgggtggttttggtgtgattggtatggaggtgtgtgaggcggtgatggggttgcattcggaggggtttgttggtggtggttttggtgtttcgtgttttggtttcgatgattttggtcatgtttttgtggatttgaatgaggtgttgatgatgggaaggaaggtttggacaagtgttggtggtagaaagggaattggtgctgaagaaatgggagtgatgtttggcagtttattgaaagatgaggcttttgttagcatggaggtgctgtttgaggtgttgaagaaagagggcattgcagtggaatgtgagagctcaaagtatatggttgggtatggctcggatgtttggtcattggcttgtgttttgctcagtctgcttcttgggaaagagttcagtgaagagattggaaatatgaatcatatttgcgatcattcaacatatgcaagttggattgaaagagttggtgatttgctggacagtagattgggttctgaatatgcatcactgagggtgactctctgtaaatgtttgaattatgatccagcaagtcgtccactagtgattgatgttatgatttgcattagggaactgattattaaacctcaatatgatatcatggccggtttggagagaccggttaaggagaacagcaaaagttgttgcttgattctgggggagctctgtcagatgcccaagaaaatgtcagaaacacagaaagaacatgagctgcagggaaaagaagttggtggaggagcagactttgatcaggttgatgaggggaggtctgagaatggttttgttgatggactcgcagagggaaaggtcaaatctaaagttctgcagggccatcgtgactctattacagcattagctgttggaggagaatttctattcagctcctcatttgacaaaaccatccatgtgtggtctttgcaggacttctgtcatgtacatacatttaaaggccatgagcataccattaaggctctaatttatgtagatgaagagaaacccttgtgcgtaagtggtgacagtggaggtggcatatttgtctggagcacaagttcccctctagggcaagaaccattgaagatactgtatccagcaagtcgtccactagtgattgatgttatgatttgcattagggaactgattattaaacctcaatatgatatcatggctggtttggagagaccggttaaggagaacagcaaaagttgttgcttgattctgggggagctctgtcagatgcccaagaaaatgtcagaaacacagaaagaacatgagctgcagggaaaagaagttggtggaggagcagactttgatcaggttgatgaggggaggtctgagaatggttttgttgatggactcgcagagggaaaggtcaaatctaaagttctgcagggccatcgtgactctattacagcattagctgttggaggtataattatatcatactttaaggttgcatatctgatagcatcagctaaaccatgtgtctggaaaaatgatgtgtttatgaaatccattaaaatgcacaatggtgcagtgtttgctactggcctggatggaaaatggcttttcacaggcgggttggataaaactgtcaatgtccaggaatggtctggtgatgagtttcaaacagagttcagacctattggatccatcccctgtgattctgtcattacaactttgttatgctggcaaggaaagcttttcgttggatatgctaataggaatatcatggacttctgtcatgtacatacatttaaaggccatgagcataccattaaggctctaatttatgtagacgaagagaaacccttgtgcataagtggtgacagtggaggtggcatatttgtctggagcacatattcccctctagggcaagaaccattgaagatactgcatgagcagaaagattggcgctttagtggtattcatgccttggcctttagagatggatatatttataccggcagtggagacagaacagtaaaagcatggtctatgcaggacggcaccatatcatgcactatgtctggtcataaatcagtagtttcaacacttacagtttgtgatagtgttctgtatagcggcagttgggatggaaccatacgattatggagtctcagcgatcacagtcctttggcagtactaggggaagacacatctggaactgtggcttctgtcttatctcttgctgctgacagacacgtgctcattgcaacccatgaaaatggatgtctaaaggtctggaaaaatgatgtgtttatgaaatccattaaaatgcacaatggtgcagtgtttgctactggcctggatggaaaatggcttttcacaggcgggttggataaaactgtcaatgtccaggaatggtctggtgatgagtttcaaacagagttcagacctattggatccatcccctgtgattctgtcattacaactttgttgtgctggcaaggaaagcttttcgttggatatgctaataggaatatcatggtgttttactatggtaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0006996 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0009657 GO:0009658 GO:0009987 GO:0010109 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0031323 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW WD40 zf-RING_UBOX

Protein Analysis

1520

Amino Acids

168.05

Weight (kDa)

5.35

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21651
fragaria_vesca	FvH4_2g27740
prunus_persica	Prupe.1G490500_v2.0.a1 Prupe.1G490500_v2.0.a1 Prupe.1G490500_v2.0.a1
pyrus_communis	pycom15g30580
rosa_chinensis	RchiOBHm_Chr6g0296591
rosa_laevigata	RLG00000011677
rosa_multiflora	Rmu_sc0001741.1_g000020
rosa_roxburghii	Rroxscaffold_6G00390100 Rroxscaffold_7G00178750
rosa_rugosa	Rorug06G0263600
rosa_samantha	Rh6BG383500 Rh6CG388600 Rh6DG376000
rosa_wichuraiana	Rw6G032710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	292, 1597
AccB1I	GGYRCC	3 cut(s)	188, 1493, 4061
AccI	GTMKAC	2 cut(s)	59, 3849
AccII	CGCG	7 cut(s)	56, 70, 72, 197, 334, 1502, 1639
AclWI	GGATC	6 cut(s)	1280, 2573, 3696, 3709, 4452, 4465
AcoI	YGGCCR	3 cut(s)	85, 1365, 2658
AcsI	RAATTY	3 cut(s)	491, 1796, 2924
AcuI	CTGAAG	3 cut(s)	969, 1734, 2262
AcvI	CACGTG	1 cut(s)	4258
AcyI	GRCGYC	6 cut(s)	189, 289, 390, 1494, 1594, 1695
AfaI	GTAC	8 cut(s)	160, 176, 386, 1481, 1691, 2991, 3801, 4197
AfiI	CCNNNNNNNGG	5 cut(s)	133, 185, 1490, 3114, 3924
AflIII	ACRYGT	1 cut(s)	4255
AgeI	ACCGGT	3 cut(s)	1381, 2674, 3235
AhdI	GACNNNNNGTC	1 cut(s)	55
AhlI	ACTAGT	3 cut(s)	1303, 2596, 3157
AjnI	CCWGG	5 cut(s)	108, 3603, 3654, 4359, 4410
AjuI	GAANNNNNNNTTGG	6 cut(s)	863, 883, 895, 915, 2188, 2220
AleI	CACNNNNGTG	2 cut(s)	3582, 4338
AloI	GAACNNNNNNTCC	2 cut(s)	3088, 3120
Alw21I	GWGCWC	8 cut(s)	1061, 1428, 2354, 2721, 3101, 3282, 3911, 4263
Alw26I	GTCTC	6 cut(s)	131, 1372, 2665, 3226, 4020, 4175
AlwI	GGATC	6 cut(s)	1280, 2573, 3696, 3709, 4452, 4465
ApeKI	GCWGC	8 cut(s)	118, 147, 199, 1504, 1745, 2767, 3328, 4244
ApoI	RAATTY	3 cut(s)	491, 1796, 2924
AsiGI	ACCGGT	3 cut(s)	1381, 2674, 3235
Asp700I	GAANNNNTTC	2 cut(s)	1136, 2429
AspLEI	GCGC	7 cut(s)	56, 72, 191, 199, 1496, 1504, 3969
AspS9I	GGNCC	4 cut(s)	342, 1647, 2884, 3445
AsuC2I	CCSGG	5 cut(s)	29, 134, 152, 280, 1585
AvaII	GGWCC	2 cut(s)	342, 1647
BaeGI	GKGCMC	1 cut(s)	29
BamHI	GGATCC	2 cut(s)	3701, 4457
BanI	GGYRCC	3 cut(s)	188, 1493, 4061
BanII	GRGCYC	7 cut(s)	421, 1061, 1428, 1726, 2354, 2721, 3282
BbrPI	CACGTG	1 cut(s)	4258
BbsI	GAAGAC	1 cut(s)	4212
Bbv12I	GWGCWC	8 cut(s)	1061, 1428, 2354, 2721, 3101, 3282, 3911, 4263
BbvI	GCAGC	8 cut(s)	105, 134, 186, 1491, 1732, 2754, 3315, 4231
BceAI	ACGGC	6 cut(s)	67, 202, 377, 1507, 1682, 4075
BcgI	CGANNNNNNTGC	4 cut(s)	2870, 2904, 3431, 3465
BciT130I	CCWGG	5 cut(s)	110, 3605, 3656, 4361, 4412
BciVI	GTATCC	1 cut(s)	3150
BclI	TGATCA	2 cut(s)	2803, 3364
BcnI	CCSGG	5 cut(s)	29, 134, 152, 280, 1585
BcoDI	GTCTC	6 cut(s)	131, 1372, 2665, 3226, 4020, 4175
BcuI	ACTAGT	3 cut(s)	1303, 2596, 3157
BfaI	CTAG	6 cut(s)	1304, 2597, 3113, 3158, 3923, 4199
BfmI	CTRYAG	5 cut(s)	38, 2768, 2879, 3329, 3440
BfoI	RGCGCY	3 cut(s)	192, 1497, 3970
BfuI	GTATCC	1 cut(s)	3150
BmcAI	AGTACT	1 cut(s)	4197
Bme18I	GGWCC	2 cut(s)	342, 1647
BmeRI	GACNNNNNGTC	1 cut(s)	55
BmgT120I	GGNCC	4 cut(s)	342, 1647, 2884, 3445
BmiI	GGNNCC	7 cut(s)	6, 190, 1495, 3703, 4063, 4153, 4459
BmrI	ACTGGG	2 cut(s)	382, 1687
BmsI	GCATC	6 cut(s)	1256, 1425, 2549, 2718, 3279, 3530
BmuI	ACTGGG	2 cut(s)	382, 1687
BoxI	GACNNNNGTC	2 cut(s)	2982, 3792
BpiI	GAAGAC	1 cut(s)	4212
BplI	GAGNNNNNCTC	4 cut(s)	1246, 1278, 2539, 2571
BpmI	CTGGAG	2 cut(s)	3115, 3925
BpuMI	CCSGG	5 cut(s)	29, 134, 152, 280, 1585
BsaAI	YACGTR	1 cut(s)	4258
BsaHI	GRCGYC	6 cut(s)	189, 289, 390, 1494, 1594, 1695
BsaI	GGTCTC	3 cut(s)	1372, 2665, 3226
BsaJI	CCNNGG	5 cut(s)	278, 332, 1583, 1637, 3987
BsaWI	WCCGGW	4 cut(s)	10, 1381, 2674, 3235
Bsc4I	CCNNNNNNNGG	5 cut(s)	133, 185, 1490, 3114, 3924
Bse118I	RCCGGY	6 cut(s)	1367, 1381, 2660, 2674, 3235, 4016
Bse1I	ACTGG	5 cut(s)	377, 458, 1682, 3604, 4360
Bse3DI	GCAATG	3 cut(s)	1038, 2331, 4263
BseBI	CCWGG	5 cut(s)	110, 3605, 3656, 4361, 4412
BseDI	CCNNGG	5 cut(s)	278, 332, 1583, 1637, 3987
BseLI	CCNNNNNNNGG	5 cut(s)	133, 185, 1490, 3114, 3924
BseMI	GCAATG	3 cut(s)	1038, 2331, 4263
BseNI	ACTGG	5 cut(s)	377, 458, 1682, 3604, 4360
BseSI	GKGCMC	1 cut(s)	29
BseXI	GCAGC	8 cut(s)	105, 134, 186, 1491, 1732, 2754, 3315, 4231
BseYI	CCCAGC	1 cut(s)	76
BsgI	GTGCAG	2 cut(s)	3606, 4362
Bsh1236I	CGCG	7 cut(s)	56, 70, 72, 197, 334, 1502, 1639
BshNI	GGYRCC	3 cut(s)	188, 1493, 4061
BshTI	ACCGGT	3 cut(s)	1381, 2674, 3235
BsiHKAI	GWGCWC	8 cut(s)	1061, 1428, 2354, 2721, 3101, 3282, 3911, 4263
BslFI	GGGAC	1 cut(s)	1996
BslI	CCNNNNNNNGG	5 cut(s)	133, 185, 1490, 3114, 3924
BsmAI	GTCTC	6 cut(s)	131, 1372, 2665, 3226, 4020, 4175
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	1996
BsmI	GAATGC	2 cut(s)	790, 2095
Bso31I	GGTCTC	3 cut(s)	1372, 2665, 3226
Bsp1407I	TGTACA	2 cut(s)	2989, 3799
Bsp143I	GATC	9 cut(s)	1174, 1285, 2467, 2578, 2803, 3364, 3701, 4177, 4457
BspFNI	CGCG	7 cut(s)	56, 70, 72, 197, 334, 1502, 1639
BspLI	GGNNCC	7 cut(s)	6, 190, 1495, 3703, 4063, 4153, 4459
BspMAI	CTGCAG	5 cut(s)	42, 2772, 2883, 3333, 3444
BspPI	GGATC	6 cut(s)	1280, 2573, 3696, 3709, 4452, 4465
BspT107I	GGYRCC	3 cut(s)	188, 1493, 4061
BspTNI	GGTCTC	3 cut(s)	1372, 2665, 3226
BsrDI	GCAATG	3 cut(s)	1038, 2331, 4263
BsrFI	RCCGGY	6 cut(s)	1367, 1381, 2660, 2674, 3235, 4016
BsrGI	TGTACA	2 cut(s)	2989, 3799
BsrI	ACTGG	5 cut(s)	377, 458, 1682, 3604, 4360
BssAI	RCCGGY	6 cut(s)	1367, 1381, 2660, 2674, 3235, 4016
BssECI	CCNNGG	5 cut(s)	278, 332, 1583, 1637, 3987
BssMI	GATC	9 cut(s)	1174, 1285, 2467, 2578, 2803, 3364, 3701, 4177, 4457
BssNI	GRCGYC	6 cut(s)	189, 289, 390, 1494, 1594, 1695
BssT1I	CCWWGG	1 cut(s)	3987
Bst2UI	CCWGG	5 cut(s)	110, 3605, 3656, 4361, 4412
Bst6I	CTCTTC	4 cut(s)	1140, 2433, 3039, 3849
BstACI	GRCGYC	6 cut(s)	189, 289, 390, 1494, 1594, 1695
BstAPI	GCANNNNNTGC	2 cut(s)	3593, 4349
BstAUI	TGTACA	2 cut(s)	2989, 3799
BstBAI	YACGTR	1 cut(s)	4258
BstC8I	GCNNGC	4 cut(s)	74, 97, 3743, 4499
BstDSI	CCRYGG	2 cut(s)	332, 1637
BstFNI	CGCG	7 cut(s)	56, 70, 72, 197, 334, 1502, 1639
BstH2I	RGCGCY	3 cut(s)	192, 1497, 3970
BstHHI	GCGC	7 cut(s)	56, 72, 191, 199, 1496, 1504, 3969
BstKTI	GATC	9 cut(s)	1177, 1288, 2470, 2581, 2806, 3367, 3704, 4180, 4460
BstMAI	GTCTC	6 cut(s)	131, 1372, 2665, 3226, 4020, 4175
BstMBI	GATC	9 cut(s)	1174, 1285, 2467, 2578, 2803, 3364, 3701, 4177, 4457
BstMWI	GCNNNNNNNGC	9 cut(s)	105, 292, 1120, 1597, 2413, 3593, 3751, 4349, 4507
BstNI	CCWGG	5 cut(s)	110, 3605, 3656, 4361, 4412
BstPAI	GACNNNNGTC	2 cut(s)	2982, 3792
BstSFI	CTRYAG	5 cut(s)	38, 2768, 2879, 3329, 3440
BstSLI	GKGCMC	1 cut(s)	29
BstUI	CGCG	7 cut(s)	56, 70, 72, 197, 334, 1502, 1639
BstV1I	GCAGC	8 cut(s)	105, 134, 186, 1491, 1732, 2754, 3315, 4231
BstV2I	GAAGAC	1 cut(s)	4212
BstX2I	RGATCY	2 cut(s)	3701, 4457
BstXI	CCANNNNNNTGG	2 cut(s)	3540, 4280
BstYI	RGATCY	2 cut(s)	3701, 4457
BsuI	GTATCC	1 cut(s)	3150
BtgI	CCRYGG	2 cut(s)	332, 1637
BtsI	GCAGTG	7 cut(s)	599, 1050, 1904, 2343, 3594, 4027, 4350
Cac8I	GCNNGC	4 cut(s)	74, 97, 3743, 4499
CfoI	GCGC	7 cut(s)	56, 72, 191, 199, 1496, 1504, 3969
Cfr10I	RCCGGY	6 cut(s)	1367, 1381, 2660, 2674, 3235, 4016
Cfr13I	GGNCC	4 cut(s)	342, 1647, 2884, 3445
Cfr42I	CCGCGG	2 cut(s)	335, 1640
CseI	GACGC	5 cut(s)	45, 281, 398, 1586, 1703
Csp6I	GTAC	8 cut(s)	159, 175, 385, 1480, 1690, 2990, 3800, 4196
CspAI	ACCGGT	3 cut(s)	1381, 2674, 3235
CspCI	CAANNNNNGTGG	1 cut(s)	32
CviQI	GTAC	8 cut(s)	159, 175, 385, 1480, 1690, 2990, 3800, 4196
DinI	GGCGCC	2 cut(s)	190, 1495
DpnI	GATC	9 cut(s)	1176, 1287, 2469, 2580, 2805, 3366, 3703, 4179, 4459
DpnII	GATC	9 cut(s)	1174, 1285, 2467, 2578, 2803, 3364, 3701, 4177, 4457
DraI	TTTAAA	2 cut(s)	3001, 3811
DriI	GACNNNNNGTC	1 cut(s)	55
EaeI	YGGCCR	3 cut(s)	85, 1365, 2658
Eam1104I	CTCTTC	4 cut(s)	1140, 2433, 3039, 3849
Eam1105I	GACNNNNNGTC	1 cut(s)	55
EarI	CTCTTC	4 cut(s)	1140, 2433, 3039, 3849
EciI	GGCGGA	3 cut(s)	234, 289, 1594
Ecl136II	GAGCTC	5 cut(s)	1059, 1426, 2352, 2719, 3280
Eco130I	CCWWGG	1 cut(s)	3987
Eco24I	GRGCYC	7 cut(s)	421, 1061, 1428, 1726, 2354, 2721, 3282
Eco31I	GGTCTC	3 cut(s)	1372, 2665, 3226
Eco32I	GATATC	3 cut(s)	1360, 2653, 3214
Eco47I	GGWCC	2 cut(s)	342, 1647
Eco53kI	GAGCTC	5 cut(s)	1059, 1426, 2352, 2719, 3280
Eco57I	CTGAAG	3 cut(s)	969, 1734, 2262
Eco72I	CACGTG	1 cut(s)	4258
EcoICRI	GAGCTC	5 cut(s)	1059, 1426, 2352, 2719, 3280
EcoRII	CCWGG	5 cut(s)	108, 3603, 3654, 4359, 4410
EcoRV	GATATC	3 cut(s)	1360, 2653, 3214
EcoT14I	CCWWGG	1 cut(s)	3987
EcoT22I	ATGCAT	2 cut(s)	1249, 2542
EcoT38I	GRGCYC	7 cut(s)	421, 1061, 1428, 1726, 2354, 2721, 3282
EgeI	GGCGCC	2 cut(s)	190, 1495
EheI	GGCGCC	2 cut(s)	190, 1495
ErhI	CCWWGG	1 cut(s)	3987
Esp3I	CGTCTC	1 cut(s)	131
FalI	AAGNNNNNCTT	4 cut(s)	3738, 3770, 4494, 4526
FaqI	GGGAC	1 cut(s)	1996
FauI	CCCGC	3 cut(s)	1560, 3623, 4379
FauNDI	CATATG	1 cut(s)	2479
FbaI	TGATCA	2 cut(s)	2803, 3364
FblI	GTMKAC	2 cut(s)	59, 3849
FriOI	GRGCYC	7 cut(s)	421, 1061, 1428, 1726, 2354, 2721, 3282
FspBI	CTAG	6 cut(s)	1304, 2597, 3113, 3158, 3923, 4199
GlaI	GCGC	7 cut(s)	55, 71, 190, 198, 1495, 1503, 3968
GsaI	CCCAGC	1 cut(s)	80
GsuI	CTGGAG	2 cut(s)	3115, 3925
HaeII	RGCGCY	3 cut(s)	192, 1497, 3970
HgaI	GACGC	5 cut(s)	45, 281, 398, 1586, 1703
HhaI	GCGC	7 cut(s)	56, 72, 191, 199, 1496, 1504, 3969
Hin1I	GRCGYC	6 cut(s)	189, 289, 390, 1494, 1594, 1695
Hin6I	GCGC	7 cut(s)	54, 70, 189, 197, 1494, 1502, 3967
HinP1I	GCGC	7 cut(s)	54, 70, 189, 197, 1494, 1502, 3967
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HindIII	AAGCTT	2 cut(s)	3752, 4508
Hpy166II	GTNNAC	6 cut(s)	60, 159, 1301, 2594, 3155, 3850
Hpy188III	TCNNGA	7 cut(s)	2891, 3094, 3452, 3541, 3904, 4215, 4297
Hpy8I	GTNNAC	6 cut(s)	60, 159, 1301, 2594, 3155, 3850
HpyAV	CCTTC	9 cut(s)	227, 361, 604, 885, 889, 1532, 1666, 2190, 2194
HpyCH4IV	ACGT	5 cut(s)	289, 1184, 1594, 1985, 4257
HpyF10VI	GCNNNNNNNGC	9 cut(s)	105, 292, 1120, 1597, 2413, 3593, 3751, 4349, 4507
HpySE526I	ACGT	5 cut(s)	289, 1184, 1594, 1985, 4257
Hsp92I	GRCGYC	6 cut(s)	189, 289, 390, 1494, 1594, 1695
HspAI	GCGC	7 cut(s)	54, 70, 189, 197, 1494, 1502, 3967
KasI	GGCGCC	2 cut(s)	188, 1493
Ksp22I	TGATCA	2 cut(s)	2803, 3364
KspI	CCGCGG	2 cut(s)	335, 1640
Kzo9I	GATC	9 cut(s)	1174, 1285, 2467, 2578, 2803, 3364, 3701, 4177, 4457
Lsp1109I	GCAGC	8 cut(s)	105, 134, 186, 1491, 1732, 2754, 3315, 4231
LweI	GCATC	6 cut(s)	1256, 1425, 2549, 2718, 3279, 3530
MaeI	CTAG	6 cut(s)	1304, 2597, 3113, 3158, 3923, 4199
MaeII	ACGT	5 cut(s)	289, 1184, 1594, 1985, 4257
MaeIII	GTNAC	6 cut(s)	1258, 2551, 2891, 3068, 3452, 3878
MalI	GATC	9 cut(s)	1176, 1287, 2469, 2580, 2805, 3366, 3703, 4179, 4459
MboI	GATC	9 cut(s)	1174, 1285, 2467, 2578, 2803, 3364, 3701, 4177, 4457
MflI	RGATCY	2 cut(s)	3701, 4457
Mly113I	GGCGCC	2 cut(s)	189, 1494
MlyI	GAGTC	8 cut(s)	1255, 1846, 2548, 2841, 2888, 3402, 3449, 4177
Mph1103I	ATGCAT	2 cut(s)	1249, 2542
MroXI	GAANNNNTTC	2 cut(s)	1136, 2429
MspA1I	CMGCKG	2 cut(s)	334, 1639
Mva1269I	GAATGC	2 cut(s)	790, 2095
MvaI	CCWGG	5 cut(s)	110, 3605, 3656, 4361, 4412
MvnI	CGCG	7 cut(s)	56, 70, 72, 197, 334, 1502, 1639
MwoI	GCNNNNNNNGC	9 cut(s)	105, 292, 1120, 1597, 2413, 3593, 3751, 4349, 4507
NarI	GGCGCC	2 cut(s)	189, 1494
NciI	CCSGG	5 cut(s)	29, 134, 152, 280, 1585
NdeI	CATATG	1 cut(s)	2479
NdeII	GATC	9 cut(s)	1174, 1285, 2467, 2578, 2803, 3364, 3701, 4177, 4457
NlaIV	GGNNCC	7 cut(s)	6, 190, 1495, 3703, 4063, 4153, 4459
NmeAIII	GCCGAG	3 cut(s)	71, 400, 1705
NmuCI	GTSAC	6 cut(s)	1258, 2551, 2891, 3068, 3452, 3878
NsiI	ATGCAT	2 cut(s)	1249, 2542
OliI	CACNNNNGTG	2 cut(s)	3582, 4338
PctI	GAATGC	2 cut(s)	790, 2095
PdmI	GAANNNNTTC	2 cut(s)	1136, 2429
PfoI	TCCNGGA	2 cut(s)	3654, 4410
PinAI	ACCGGT	3 cut(s)	1381, 2674, 3235
PleI	GAGTC	8 cut(s)	1255, 1845, 2548, 2841, 2888, 3402, 3449, 4176
PluTI	GGCGCC	2 cut(s)	192, 1497
PmaCI	CACGTG	1 cut(s)	4258
PmlI	CACGTG	1 cut(s)	4258
PpsI	GAGTC	8 cut(s)	1255, 1845, 2548, 2841, 2888, 3402, 3449, 4176
Ppu21I	YACGTR	1 cut(s)	4258
PshAI	GACNNNNGTC	2 cut(s)	2982, 3792
Psp124BI	GAGCTC	5 cut(s)	1061, 1428, 2354, 2721, 3282
Psp6I	CCWGG	5 cut(s)	108, 3603, 3654, 4359, 4410
PspCI	CACGTG	1 cut(s)	4258
PspFI	CCCAGC	1 cut(s)	76
PspGI	CCWGG	5 cut(s)	108, 3603, 3654, 4359, 4410
PspN4I	GGNNCC	7 cut(s)	6, 190, 1495, 3703, 4063, 4153, 4459
PspPI	GGNCC	4 cut(s)	342, 1647, 2884, 3445
PsrI	GAACNNNNNNTAC	4 cut(s)	1219, 1251, 2512, 2544
PstI	CTGCAG	5 cut(s)	42, 2772, 2883, 3333, 3444
PsuI	RGATCY	2 cut(s)	3701, 4457
RsaI	GTAC	8 cut(s)	160, 176, 386, 1481, 1691, 2991, 3801, 4197
RsaNI	GTAC	8 cut(s)	159, 175, 385, 1480, 1690, 2990, 3800, 4196
SacI	GAGCTC	5 cut(s)	1061, 1428, 2354, 2721, 3282
SacII	CCGCGG	2 cut(s)	335, 1640
SalI	GTCGAC	1 cut(s)	58
Sau3AI	GATC	9 cut(s)	1174, 1285, 2467, 2578, 2803, 3364, 3701, 4177, 4457
Sau96I	GGNCC	4 cut(s)	342, 1647, 2884, 3445
ScaI	AGTACT	1 cut(s)	4197
SchI	GAGTC	8 cut(s)	1255, 1846, 2548, 2841, 2888, 3402, 3449, 4177
SfaNI	GCATC	6 cut(s)	1256, 1425, 2549, 2718, 3279, 3530
SfcI	CTRYAG	5 cut(s)	38, 2768, 2879, 3329, 3440
SfoI	GGCGCC	2 cut(s)	190, 1495
Sfr303I	CCGCGG	2 cut(s)	335, 1640
SgrBI	CCGCGG	2 cut(s)	335, 1640
SgrDI	CGTCGACG	1 cut(s)	58
SinI	GGWCC	2 cut(s)	342, 1647
SpeI	ACTAGT	3 cut(s)	1303, 2596, 3157
SspDI	GGCGCC	2 cut(s)	188, 1493
SspMI	CTAG	6 cut(s)	1304, 2597, 3113, 3158, 3923, 4199
SstI	GAGCTC	5 cut(s)	1061, 1428, 2354, 2721, 3282
StyI	CCWWGG	1 cut(s)	3987
TaiI	ACGT	5 cut(s)	292, 1187, 1597, 1988, 4260
TaqI	TCGA	9 cut(s)	59, 213, 402, 840, 1061, 1518, 1707, 1840, 2145
TatI	WGTACW	4 cut(s)	158, 2989, 3799, 4195
TseFI	GTSAC	6 cut(s)	1258, 2551, 2891, 3068, 3452, 3878
TseI	GCWGC	8 cut(s)	118, 147, 199, 1504, 1745, 2767, 3328, 4244
Tsp45I	GTSAC	6 cut(s)	1258, 2551, 2891, 3068, 3452, 3878
TspDTI	ATGAA	9 cut(s)	536, 1175, 1841, 2468, 3057, 3575, 3971, 4290, 4331
TspGWI	ACGGA	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	342, 1647
XapI	RAATTY	3 cut(s)	491, 1796, 2924
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3662, 4418
XmiI	GTMKAC	2 cut(s)	59, 3849
XmnI	GAANNNNTTC	2 cut(s)	1136, 2429
XspI	CTAG	6 cut(s)	1304, 2597, 3113, 3158, 3923, 4199
ZraI	GACGTC	2 cut(s)	290, 1595
ZrmI	AGTACT	1 cut(s)	4197
Zsp2I	ATGCAT	2 cut(s)	1249, 2542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.