Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0015005

Physical Location & Seq

Genomic Coordinates Forward (+)

57055053 .. 57059807

Gene Structure 4755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG376000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2448 bp

ATGGAGCCGCCGGAGTGCCCAGTGTGTCTCCAAAACTACGACGGCGCGTCGACGATTCCGCGCGTGCTGGGTTGCGGCCACTCGGCGTGCGAGGTCTGCCTGGCGAAGCTGCCCCACCGCTACCCGGAGACGATTCGCTGCCCGGCGTGTACTCAGCTCGTCAAGTACCCTCAGAACGGCGCCGCCGCGCTGCCCAAGAACATCGACCTCCTCTCACTCTCTCTCTCCCTCTCTCCGCCGCAAAACCCTAACCCTAATTCCGACGATCCCCGGAAGCCACGTCAGCAATCCGCGGATGAAGAAGTGTTTAATTTCCTGCCGCGGCTATGGTCCGACGAGTTTTATAGTGCTTGGAAGGACTGGGTCGTTGGGTACGACGCCGTTTTGGTCGAAAAGGAAGAAAGGGCTCGGCTTTGTGATTCTGGTGCTGCTGTGGGGTTAGTTCAAGTTGGGTTTTTGGAGAGATTGGGTGATTCTAAATTTGAGTTTAGCTACAATGCGAGGGTTATGAAGTGTTTGAGTGGAATGAGAGAGGAGGAGAGGAGAGAATTGGGTTTGTTGCTGAGAGGTTCTGGTAGGCAGTGTAGGAGAGTAGGGAAGGTTTATGGGTTTTGGGGTAATGTGGAAGATGGGGTTTTGTATTTAGTGTGTGAGAGCCAGAATGGGAGGTTTGAGGAGAAGTTGAGGGGTTTGAGAAATGGAGATGGTTTTGGTAGAGATGGGTTGGGTGGTTTTGGTGTGATTGGTATGGAGGTGTGTGAGGCGGTGATGGGGTTGCATTCGGAGGGGTTTGTTGGTGGTGGTTTTGGTGTTTCGTGTTTTGGTTTCGATGATTTTGGTCATGTTTTTGTGGATTTGAATGAGGTGTTGGTGATGGGAAGGAAGGTTTGGAGAAGTGTTGGGGATAGTGTTGGTGGTAGAAAGGGAATTGGTGCTGAAGAAATGGGAGTGATGTTTGGGAGTTTATTTAAAGATGAGGCTTTTGTTAGCATGGAGGTGTTGTTTGAGGTGTTGAAGAAAGAGGGCATTGCAGTGGAATGTGAGAGCTCGAAATATATGGTTGGGTATGGCTCAGATGTTTGGTCATTAGCTTGTGTTTTGCTGAGTCTGCTTCTTGGGAAAGAGTTCAGTGAAGAGATTGGAAATATGAATCATATTTGCGATCATTCAATGTATGCAAGTTGGATTGAAAGAGTTGGTGATTTGCTGGACAGTAGATTGGGTTCTGAATATGCATCACTGAGGGTGACTCTCTGTAAATGTTTGAATTATGATCCAGCAAGTCGTCCACTAGTCATTGATGTTATGATTTGCATTAGGGAACTGATTATTAAACCTCAATATGATATCATGGCCGGTTTGGAGAGACCGGTTAAGGAGAACAGCGCAAGTTGTTGCTTGATTCTGGGGGAGCTCTGTCAGATGCCCAAGAAAATGTCAGAAACACAGAAAGAACATGAGTTGCAGGGAAAAGAAGTTGGTGGAGGAGCAGACCTTGATCAGGTTGATGAGGGGAGGTCTGAGAATGGTTTTGTTGATGGACTCGCAGAGGGAAAGGTCAAATCTAAAGTTCTGCAGGGCCATCGTGACTCTATTACAGCATTAGCTGTTGGAGGAGAATTTCTATTCAGCTCCTCATTTGACAAAACCATCCATGTGTGGTCTTTGCAGGACTTCTGTCATGTACATACATTTAAAGGCCATGAGCATACCATTAAGGCTCTAATTTATGTAGATGAAGAGAAACCCTTGTGCATAAGTGGTGACAGTGGAGGTGGCATATTTGTCTGGAGCACATGTTCCCCTCTTGGGCAAGAACCATTGAAGATACTGTATGAGCAGAAAGATTGGCGCTTTAGTGGTATTCATGCCTTGGCCTTTAGAGATGGATATATTTATACCGGCAGTGGAGACAGAACAGTAAAAGCATGGTCTATGCAGGATGGCACCATATCATGCACTATGTCTGGTCATAAATCAGTAGTTTCAACACTTACAGTTTGTGATAGTGTTCTGTATAGCGGCAGTTGGGATGGAACCATACGATTATGGAGTCTTAGCGATCACAGTCCTTTGGCAGTACTAGGGGAAGACACATCTGGAACTGTGGCTTCTGTCTTATCTATTGCTGCTGACAGACATGTGCTCATTGCAACCCATGAAAATGGATGTCTAAAGGTCTGGAAAAATGATGTGTTTATGAAATCCATTAAAATGCACAATGGTGCAGTTTTTGCTACCGGCCTGGATGGGAAATGGCTTTTCACAGGCGGGTTGGATAAAACTGTCAATGTCCAGGAATGGTCTGGTGATGAGTTTCAAACAGATTTCAGACCTATTGGATCCATCCCCTGTGATTCTGTCATTACAACTTTGTTGTGCTGGCAAGGAAAGCTTTTCGTTGGATATGCTAATAGGAATATCATGGTGTTTTACTATGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0006996 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0009657 GO:0009658 GO:0009987 GO:0010109 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0031323 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW WD40 zf-RING_UBOX

Protein Analysis

815

Amino Acids

89.84

Weight (kDa)

5.32

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_UBOX	PF13445	6 - 48	6.6e-07	RING-type zinc-finger
WDR55	PF24796	516 - 729	4.7e-13	WDR55
WD40_Gbeta	PF25391	522 - 684	5.2e-08	G protein beta WD-40 repeat protein
Beta-prop_SCAP	PF24017	523 - 598	2.2e-06	SCAP Beta-propeller
Beta-prop_WDR3_1st	PF25173	524 - 597	1.9e-08	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	525 - 743	2.2e-23	WDR5 beta-propeller domain
WD40_Prp19	PF24814	620 - 731	1e-08	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	629 - 744	5.5e-07	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	631 - 765	8.1e-14	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	631 - 728	1.6e-07	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	631 - 692	1.1e-07	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21651
fragaria_vesca	FvH4_2g27740
prunus_persica	Prupe.1G490500_v2.0.a1 Prupe.1G490500_v2.0.a1 Prupe.1G490500_v2.0.a1
pyrus_communis	pycom15g30580
rosa_chinensis	RchiOBHm_Chr6g0296591
rosa_laevigata	RLG00000011677
rosa_multiflora	Rmu_sc0001741.1_g000020
rosa_roxburghii	Rroxscaffold_6G00390100 Rroxscaffold_7G00178750
rosa_rugosa	Rorug06G0263600
rosa_samantha	Rh6BG383500 Rh6CG388600 Rh6DG376000
rosa_wichuraiana	Rw6G032710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	179, 1946
AccI	GTMKAC	1 cut(s)	50
AccII	CGCG	6 cut(s)	47, 61, 63, 188, 293, 322
AclWI	GGATC	4 cut(s)	260, 1268, 2337, 2350
AcoI	YGGCCR	2 cut(s)	76, 1353
AcsI	RAATTY	2 cut(s)	479, 1619
AcuI	CTGAAG	1 cut(s)	957
AcyI	GRCGYC	2 cut(s)	180, 378
AfaI	GTAC	5 cut(s)	151, 167, 374, 1686, 2082
AfiI	CCNNNNNNNGG	4 cut(s)	124, 176, 1501, 1809
AflIII	ACRYGT	2 cut(s)	1796, 2140
AgeI	ACCGGT	1 cut(s)	1369
AgsI	TTSAA	9 cut(s)	446, 859, 1015, 1170, 1190, 1267, 1825, 1989, 2321
AhdI	GACNNNNNGTC	1 cut(s)	46
AhlI	ACTAGT	1 cut(s)	1291
AjiI	CACGTC	1 cut(s)	281
AjnI	CCWGG	3 cut(s)	99, 2244, 2295
AjuI	GAANNNNNNNTTGG	4 cut(s)	851, 871, 883, 903
AleI	CACNNNNGTG	1 cut(s)	2223
AloI	GAACNNNNNNTCC	2 cut(s)	1783, 1815
AluBI	AGCT	9 cut(s)	109, 157, 492, 1047, 1091, 1414, 1607, 1632, 2395
AluI	AGCT	9 cut(s)	109, 157, 492, 1047, 1091, 1414, 1607, 1632, 2395
Alw21I	GWGCWC	4 cut(s)	1049, 1416, 1796, 2148
Alw26I	GTCTC	4 cut(s)	32, 122, 1360, 1905
AlwI	GGATC	4 cut(s)	260, 1268, 2337, 2350
AoxI	GGCC	6 cut(s)	76, 1353, 1579, 1699, 1875, 2242
ApeKI	GCWGC	5 cut(s)	109, 138, 190, 428, 2129
ApoI	RAATTY	2 cut(s)	479, 1619
AsiGI	ACCGGT	1 cut(s)	1369
Asp700I	GAANNNNTTC	1 cut(s)	1124
AspLEI	GCGC	6 cut(s)	47, 63, 182, 190, 1388, 1854
AspS9I	GGNCC	2 cut(s)	330, 1579
AsuC2I	CCSGG	3 cut(s)	125, 143, 271
AsuHPI	GGTGA	7 cut(s)	482, 778, 883, 1211, 1258, 1775, 2321
AvaII	GGWCC	1 cut(s)	330
BaeGI	GKGCMC	1 cut(s)	20
BamHI	GGATCC	1 cut(s)	2342
BanI	GGYRCC	2 cut(s)	179, 1946
BanII	GRGCYC	3 cut(s)	409, 1049, 1416
BbsI	GAAGAC	1 cut(s)	2097
Bbv12I	GWGCWC	4 cut(s)	1049, 1416, 1796, 2148
BbvI	GCAGC	5 cut(s)	96, 125, 177, 415, 2116
BceAI	ACGGC	3 cut(s)	58, 193, 365
BcgI	CGANNNNNNTGC	2 cut(s)	1565, 1599
BciT130I	CCWGG	3 cut(s)	101, 2246, 2297
BclI	TGATCA	1 cut(s)	1498
BcnI	CCSGG	3 cut(s)	125, 143, 271
BcoDI	GTCTC	4 cut(s)	32, 122, 1360, 1905
BcuI	ACTAGT	1 cut(s)	1291
BfaI	CTAG	2 cut(s)	1292, 2084
BfmI	CTRYAG	1 cut(s)	1574
BfoI	RGCGCY	2 cut(s)	183, 1855
BmcAI	AGTACT	1 cut(s)	2082
Bme1390I	CCNGG	6 cut(s)	101, 125, 143, 271, 2246, 2297
Bme18I	GGWCC	1 cut(s)	330
BmeRI	GACNNNNNGTC	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	330, 1579
BmiI	GGNNCC	5 cut(s)	6, 181, 1948, 2038, 2344
BmrFI	CCNGG	6 cut(s)	101, 125, 143, 271, 2246, 2297
BmrI	ACTGGG	2 cut(s)	14, 370
BmsI	GCATC	2 cut(s)	1244, 1413
BmuI	ACTGGG	2 cut(s)	14, 370
BoxI	GACNNNNGTC	1 cut(s)	1677
BpiI	GAAGAC	1 cut(s)	2097
BplI	GAGNNNNNCTC	2 cut(s)	1234, 1266
BpmI	CTGGAG	1 cut(s)	1810
BpuMI	CCSGG	3 cut(s)	125, 143, 271
BsaHI	GRCGYC	2 cut(s)	180, 378
BsaI	GGTCTC	1 cut(s)	1360
BsaJI	CCNNGG	4 cut(s)	269, 291, 320, 1872
BsaWI	WCCGGW	1 cut(s)	1369
BsaXI	ACNNNNNCTCC	4 cut(s)	986, 1016, 1783, 1813
Bsc4I	CCNNNNNNNGG	4 cut(s)	124, 176, 1501, 1809
Bse118I	RCCGGY	4 cut(s)	1355, 1369, 1901, 2240
Bse1I	ACTGG	2 cut(s)	20, 365
Bse3DI	GCAATG	2 cut(s)	1026, 2148
BseBI	CCWGG	3 cut(s)	101, 2246, 2297
BseDI	CCNNGG	4 cut(s)	269, 291, 320, 1872
BseGI	GGATG	7 cut(s)	301, 1650, 1948, 2038, 2174, 2254, 2346
BseLI	CCNNNNNNNGG	4 cut(s)	124, 176, 1501, 1809
BseMI	GCAATG	2 cut(s)	1026, 2148
BseMII	CTCAG	7 cut(s)	167, 185, 554, 1086, 1094, 1232, 1512
BseNI	ACTGG	2 cut(s)	20, 365
BseRI	GAGGAG	8 cut(s)	200, 548, 551, 556, 689, 1500, 1624, 1629
BseSI	GKGCMC	1 cut(s)	20
BseXI	GCAGC	5 cut(s)	96, 125, 177, 415, 2116
BseYI	CCCAGC	1 cut(s)	67
BsgI	GTGCAG	1 cut(s)	2247
Bsh1236I	CGCG	6 cut(s)	47, 61, 63, 188, 293, 322
BshFI	GGCC	6 cut(s)	78, 1355, 1581, 1701, 1877, 2244
BshNI	GGYRCC	2 cut(s)	179, 1946
BshTI	ACCGGT	1 cut(s)	1369
BsiHKAI	GWGCWC	4 cut(s)	1049, 1416, 1796, 2148
BsiSI	CCGG	8 cut(s)	11, 125, 143, 271, 1356, 1370, 1902, 2241
BslI	CCNNNNNNNGG	4 cut(s)	124, 176, 1501, 1809
BsmAI	GTCTC	4 cut(s)	32, 122, 1360, 1905
BsmBI	CGTCTC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	778
BsnI	GGCC	6 cut(s)	78, 1355, 1581, 1701, 1877, 2244
Bso31I	GGTCTC	1 cut(s)	1360
Bsp1286I	GDGCHC	6 cut(s)	20, 409, 1049, 1416, 1796, 2148
Bsp1407I	TGTACA	1 cut(s)	1684
Bsp143I	GATC	6 cut(s)	265, 1162, 1273, 1498, 2062, 2342
BspANI	GGCC	6 cut(s)	78, 1355, 1581, 1701, 1877, 2244
BspCNI	CTCAG	7 cut(s)	166, 184, 555, 1085, 1095, 1233, 1513
BspFNI	CGCG	6 cut(s)	47, 61, 63, 188, 293, 322
BspLI	GGNNCC	5 cut(s)	6, 181, 1948, 2038, 2344
BspMAI	CTGCAG	1 cut(s)	1578
BspPI	GGATC	4 cut(s)	260, 1268, 2337, 2350
BspT107I	GGYRCC	2 cut(s)	179, 1946
BspTNI	GGTCTC	1 cut(s)	1360
BsrDI	GCAATG	2 cut(s)	1026, 2148
BsrFI	RCCGGY	4 cut(s)	1355, 1369, 1901, 2240
BsrGI	TGTACA	1 cut(s)	1684
BsrI	ACTGG	2 cut(s)	20, 365
BssAI	RCCGGY	4 cut(s)	1355, 1369, 1901, 2240
BssECI	CCNNGG	4 cut(s)	269, 291, 320, 1872
BssMI	GATC	6 cut(s)	265, 1162, 1273, 1498, 2062, 2342
BssNI	GRCGYC	2 cut(s)	180, 378
BssT1I	CCWWGG	1 cut(s)	1872
Bst2UI	CCWGG	3 cut(s)	101, 2246, 2297
Bst4CI	ACNGT	8 cut(s)	1214, 1769, 1833, 1921, 1999, 2069, 2107, 2287
Bst6I	CTCTTC	2 cut(s)	1128, 1734
BstACI	GRCGYC	2 cut(s)	180, 378
BstAPI	GCANNNNNTGC	1 cut(s)	2234
BstAUI	TGTACA	1 cut(s)	1684
BstC8I	GCNNGC	3 cut(s)	65, 88, 2384
BstDEI	CTNAG	8 cut(s)	153, 171, 563, 1072, 1103, 1241, 1521, 2057
BstDSI	CCRYGG	2 cut(s)	291, 320
BstENI	CCTNNNNNAGG	1 cut(s)	1499
BstF5I	GGATG	7 cut(s)	301, 1650, 1948, 2038, 2174, 2254, 2346
BstFNI	CGCG	6 cut(s)	47, 61, 63, 188, 293, 322
BstH2I	RGCGCY	2 cut(s)	183, 1855
BstHHI	GCGC	6 cut(s)	47, 63, 182, 190, 1388, 1854
BstKTI	GATC	6 cut(s)	268, 1165, 1276, 1501, 2065, 2345
BstMAI	GTCTC	4 cut(s)	32, 122, 1360, 1905
BstMBI	GATC	6 cut(s)	265, 1162, 1273, 1498, 2062, 2342
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 283, 1108, 2234, 2392
BstNI	CCWGG	3 cut(s)	101, 2246, 2297
BstNSI	RCATGY	2 cut(s)	1800, 2144
BstPAI	GACNNNNGTC	1 cut(s)	1677
BstSCI	CCNGG	6 cut(s)	99, 123, 141, 269, 2244, 2295
BstSFI	CTRYAG	1 cut(s)	1574
BstSLI	GKGCMC	1 cut(s)	20
BstUI	CGCG	6 cut(s)	47, 61, 63, 188, 293, 322
BstV1I	GCAGC	5 cut(s)	96, 125, 177, 415, 2116
BstV2I	GAAGAC	1 cut(s)	2097
BstX2I	RGATCY	1 cut(s)	2342
BstXI	CCANNNNNNTGG	1 cut(s)	2165
BstYI	RGATCY	1 cut(s)	2342
BsuRI	GGCC	6 cut(s)	78, 1355, 1581, 1701, 1877, 2244
BtgI	CCRYGG	2 cut(s)	291, 320
BtrI	CACGTC	1 cut(s)	281
BtsCI	GGATG	7 cut(s)	301, 1650, 1948, 2038, 2174, 2254, 2346
BtsI	GCAGTG	3 cut(s)	587, 1038, 1912
BtsIMutI	CAGTG	7 cut(s)	27, 587, 1038, 1135, 1238, 1774, 1912
Cac8I	GCNNGC	3 cut(s)	65, 88, 2384
CfoI	GCGC	6 cut(s)	47, 63, 182, 190, 1388, 1854
Cfr10I	RCCGGY	4 cut(s)	1355, 1369, 1901, 2240
Cfr13I	GGNCC	2 cut(s)	330, 1579
Cfr42I	CCGCGG	2 cut(s)	294, 323
CseI	GACGC	2 cut(s)	36, 386
Csp6I	GTAC	5 cut(s)	150, 166, 373, 1685, 2081
CspAI	ACCGGT	1 cut(s)	1369
CviQI	GTAC	5 cut(s)	150, 166, 373, 1685, 2081
DdeI	CTNAG	8 cut(s)	153, 171, 563, 1072, 1103, 1241, 1521, 2057
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	6 cut(s)	267, 1164, 1275, 1500, 2064, 2344
DpnII	GATC	6 cut(s)	265, 1162, 1273, 1498, 2062, 2342
DraI	TTTAAA	2 cut(s)	970, 1696
DriI	GACNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	2 cut(s)	76, 1353
Eam1104I	CTCTTC	2 cut(s)	1128, 1734
Eam1105I	GACNNNNNGTC	1 cut(s)	46
EarI	CTCTTC	2 cut(s)	1128, 1734
EciI	GGCGGA	1 cut(s)	225
Ecl136II	GAGCTC	2 cut(s)	1047, 1414
Eco130I	CCWWGG	1 cut(s)	1872
Eco24I	GRGCYC	3 cut(s)	409, 1049, 1416
Eco31I	GGTCTC	1 cut(s)	1360
Eco32I	GATATC	1 cut(s)	1348
Eco47I	GGWCC	1 cut(s)	330
Eco53kI	GAGCTC	2 cut(s)	1047, 1414
Eco57I	CTGAAG	1 cut(s)	957
EcoICRI	GAGCTC	2 cut(s)	1047, 1414
EcoNI	CCTNNNNNAGG	1 cut(s)	1499
EcoRII	CCWGG	3 cut(s)	99, 2244, 2295
EcoRV	GATATC	1 cut(s)	1348
EcoT14I	CCWWGG	1 cut(s)	1872
EcoT22I	ATGCAT	1 cut(s)	1237
EcoT38I	GRGCYC	3 cut(s)	409, 1049, 1416
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	1872
Esp3I	CGTCTC	1 cut(s)	122
FalI	AAGNNNNNCTT	2 cut(s)	2379, 2411
FauI	CCCGC	1 cut(s)	2264
FbaI	TGATCA	1 cut(s)	1498
FblI	GTMKAC	1 cut(s)	50
FokI	GGATG	7 cut(s)	308, 1637, 1955, 2045, 2181, 2261, 2333
FriOI	GRGCYC	3 cut(s)	409, 1049, 1416
FspBI	CTAG	2 cut(s)	1292, 2084
GlaI	GCGC	6 cut(s)	46, 62, 181, 189, 1387, 1853
GsaI	CCCAGC	1 cut(s)	71
GsuI	CTGGAG	1 cut(s)	1810
HaeII	RGCGCY	2 cut(s)	183, 1855
HaeIII	GGCC	6 cut(s)	78, 1355, 1581, 1701, 1877, 2244
HapII	CCGG	8 cut(s)	11, 125, 143, 271, 1356, 1370, 1902, 2241
HgaI	GACGC	2 cut(s)	36, 386
HhaI	GCGC	6 cut(s)	47, 63, 182, 190, 1388, 1854
Hin1I	GRCGYC	2 cut(s)	180, 378
Hin6I	GCGC	6 cut(s)	45, 61, 180, 188, 1386, 1852
HinP1I	GCGC	6 cut(s)	45, 61, 180, 188, 1386, 1852
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	2393
HpaII	CCGG	8 cut(s)	11, 125, 143, 271, 1356, 1370, 1902, 2241
HphI	GGTGA	7 cut(s)	482, 778, 883, 1211, 1258, 1775, 2321
Hpy166II	GTNNAC	3 cut(s)	51, 150, 1289
Hpy188III	TCNNGA	4 cut(s)	1586, 1789, 2100, 2182
Hpy8I	GTNNAC	3 cut(s)	51, 150, 1289
Hpy99I	CGWCG	6 cut(s)	44, 52, 55, 266, 338, 380
HpyAV	CCTTC	4 cut(s)	349, 592, 873, 877
HpyCH4III	ACNGT	8 cut(s)	1214, 1769, 1833, 1921, 1999, 2069, 2107, 2287
HpyCH4IV	ACGT	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 283, 1108, 2234, 2392
HpyF3I	CTNAG	8 cut(s)	153, 171, 563, 1072, 1103, 1241, 1521, 2057
HpySE526I	ACGT	1 cut(s)	280
Hsp92I	GRCGYC	2 cut(s)	180, 378
HspAI	GCGC	6 cut(s)	45, 61, 180, 188, 1386, 1852
KasI	GGCGCC	1 cut(s)	179
Ksp22I	TGATCA	1 cut(s)	1498
KspI	CCGCGG	2 cut(s)	294, 323
Kzo9I	GATC	6 cut(s)	265, 1162, 1273, 1498, 2062, 2342
LmnI	GCTCC	5 cut(s)	4, 1411, 1487, 1637, 1791
Lsp1109I	GCAGC	5 cut(s)	96, 125, 177, 415, 2116
LweI	GCATC	2 cut(s)	1244, 1413
MaeI	CTAG	2 cut(s)	1292, 2084
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	3 cut(s)	1246, 1586, 1763
MalI	GATC	6 cut(s)	267, 1164, 1275, 1500, 2064, 2344
MboI	GATC	6 cut(s)	265, 1162, 1273, 1498, 2062, 2342
MboII	GAAGA	9 cut(s)	311, 410, 638, 950, 1027, 1145, 1751, 1837, 2102
MflI	RGATCY	1 cut(s)	2342
MhlI	GDGCHC	6 cut(s)	20, 409, 1049, 1416, 1796, 2148
MluCI	AATT	8 cut(s)	256, 310, 479, 548, 927, 1267, 1619, 1725
Mly113I	GGCGCC	1 cut(s)	180
MlyI	GAGTC	5 cut(s)	1114, 1243, 1536, 1583, 2062
MmeI	TCCRAC	6 cut(s)	285, 357, 1163, 1591, 2256, 2383
Mph1103I	ATGCAT	1 cut(s)	1237
MroXI	GAANNNNTTC	1 cut(s)	1124
MseI	TTAA	7 cut(s)	309, 969, 1332, 1374, 1695, 1716, 2211
MslI	CAYNNNNRTG	6 cut(s)	995, 1031, 1655, 2163, 2213, 2223
MspA1I	CMGCKG	2 cut(s)	293, 322
MspI	CCGG	8 cut(s)	11, 125, 143, 271, 1356, 1370, 1902, 2241
MspR9I	CCNGG	6 cut(s)	101, 125, 143, 271, 2246, 2297
Mva1269I	GAATGC	1 cut(s)	778
MvaI	CCWGG	3 cut(s)	101, 2246, 2297
MvnI	CGCG	6 cut(s)	47, 61, 63, 188, 293, 322
MwoI	GCNNNNNNNGC	5 cut(s)	96, 283, 1108, 2234, 2392
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	3 cut(s)	125, 143, 271
NdeII	GATC	6 cut(s)	265, 1162, 1273, 1498, 2062, 2342
NlaIV	GGNNCC	5 cut(s)	6, 181, 1948, 2038, 2344
NmeAIII	GCCGAG	2 cut(s)	62, 388
NmuCI	GTSAC	3 cut(s)	1246, 1586, 1763
NsiI	ATGCAT	1 cut(s)	1237
NspI	RCATGY	2 cut(s)	1800, 2144
OliI	CACNNNNGTG	1 cut(s)	2223
PciI	ACATGT	2 cut(s)	1796, 2140
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PctI	GAATGC	1 cut(s)	778
PdmI	GAANNNNTTC	1 cut(s)	1124
PfeI	GAWTC	7 cut(s)	55, 133, 419, 473, 1150, 1402, 2357
PflFI	GACNNNGTC	1 cut(s)	362
PfoI	TCCNGGA	1 cut(s)	2295
PinAI	ACCGGT	1 cut(s)	1369
PleI	GAGTC	5 cut(s)	1113, 1243, 1536, 1583, 2061
PluTI	GGCGCC	1 cut(s)	183
PpsI	GAGTC	5 cut(s)	1113, 1243, 1536, 1583, 2061
PscI	ACATGT	2 cut(s)	1796, 2140
PshAI	GACNNNNGTC	1 cut(s)	1677
Psp124BI	GAGCTC	2 cut(s)	1049, 1416
Psp6I	CCWGG	3 cut(s)	99, 2244, 2295
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	3 cut(s)	99, 2244, 2295
PspN4I	GGNNCC	5 cut(s)	6, 181, 1948, 2038, 2344
PspPI	GGNCC	2 cut(s)	330, 1579
PsrI	GAACNNNNNNTAC	2 cut(s)	1207, 1239
PstI	CTGCAG	1 cut(s)	1578
PsuI	RGATCY	1 cut(s)	2342
PsyI	GACNNNGTC	1 cut(s)	362
RsaI	GTAC	5 cut(s)	151, 167, 374, 1686, 2082
RsaNI	GTAC	5 cut(s)	150, 166, 373, 1685, 2081
RseI	CAYNNNNRTG	6 cut(s)	995, 1031, 1655, 2163, 2213, 2223
SacI	GAGCTC	2 cut(s)	1049, 1416
SacII	CCGCGG	2 cut(s)	294, 323
SalI	GTCGAC	1 cut(s)	49
SaqAI	TTAA	7 cut(s)	309, 969, 1332, 1374, 1695, 1716, 2211
Sau3AI	GATC	6 cut(s)	265, 1162, 1273, 1498, 2062, 2342
Sau96I	GGNCC	2 cut(s)	330, 1579
ScaI	AGTACT	1 cut(s)	2082
SchI	GAGTC	5 cut(s)	1114, 1243, 1536, 1583, 2062
ScrFI	CCNGG	6 cut(s)	101, 125, 143, 271, 2246, 2297
SduI	GDGCHC	6 cut(s)	20, 409, 1049, 1416, 1796, 2148
SfaNI	GCATC	2 cut(s)	1244, 1413
SfcI	CTRYAG	1 cut(s)	1574
SfoI	GGCGCC	1 cut(s)	181
Sfr303I	CCGCGG	2 cut(s)	294, 323
SgrBI	CCGCGG	2 cut(s)	294, 323
SgrDI	CGTCGACG	1 cut(s)	49
SinI	GGWCC	1 cut(s)	330
SmiMI	CAYNNNNRTG	6 cut(s)	995, 1031, 1655, 2163, 2213, 2223
SpeI	ACTAGT	1 cut(s)	1291
Sse9I	AATT	8 cut(s)	256, 310, 479, 548, 927, 1267, 1619, 1725
SspDI	GGCGCC	1 cut(s)	179
SspMI	CTAG	2 cut(s)	1292, 2084
SstI	GAGCTC	2 cut(s)	1049, 1416
StyD4I	CCNGG	6 cut(s)	99, 123, 141, 269, 2244, 2295
StyI	CCWWGG	1 cut(s)	1872
TaaI	ACNGT	8 cut(s)	1214, 1769, 1833, 1921, 1999, 2069, 2107, 2287
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	5 cut(s)	50, 204, 390, 828, 1049
TasI	AATT	8 cut(s)	256, 310, 479, 548, 927, 1267, 1619, 1725
TatI	WGTACW	3 cut(s)	149, 1684, 2080
TauI	GCSGC	8 cut(s)	10, 78, 185, 188, 241, 322, 325, 2025
TfiI	GAWTC	7 cut(s)	55, 133, 419, 473, 1150, 1402, 2357
Tru1I	TTAA	7 cut(s)	309, 969, 1332, 1374, 1695, 1716, 2211
Tru9I	TTAA	7 cut(s)	309, 969, 1332, 1374, 1695, 1716, 2211
TscAI	CASTG	7 cut(s)	27, 587, 1038, 1135, 1245, 1774, 1912
TseFI	GTSAC	3 cut(s)	1246, 1586, 1763
TseI	GCWGC	5 cut(s)	109, 138, 190, 428, 2129
Tsp45I	GTSAC	3 cut(s)	1246, 1586, 1763
TspDTI	ATGAA	7 cut(s)	312, 524, 1163, 1752, 1856, 2175, 2216
TspRI	CASTG	7 cut(s)	27, 587, 1038, 1135, 1245, 1774, 1912
Tth111I	GACNNNGTC	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	330
XagI	CCTNNNNNAGG	1 cut(s)	1499
XapI	RAATTY	2 cut(s)	479, 1619
XceI	RCATGY	2 cut(s)	1800, 2144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2303
XmiI	GTMKAC	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	1124
XspI	CTAG	2 cut(s)	1292, 2084
ZrmI	AGTACT	1 cut(s)	2082
Zsp2I	ATGCAT	1 cut(s)	1237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.