Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0015005

Physical Location & Seq

Genomic Coordinates Forward (+)

57554532 .. 57559356

Gene Structure 4825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG388600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2451 bp

ATGGAGCCACCGGAGTGCCCAGTGTGTCTGCAGAACTACGACGGCGCGTCGACGATTCCGCGCGTGCTGGGTTGCGGCCACTCGGCGTGCGAGGTCTGCCTGGCGAAGCTGCCCCACCGCTACCCGGAGACGATTCGCTGCCCGGCGTGTACTCAGCTCGTCAAGTACCCTCAGAACGGCGCCGCCGCGCTGCCCAAGAACATCGACCTTCTCTCGCTCTCTCTCTCCCTCTCTCCGCCGCAAAACCCTAACCCTAATTCCGACGCTCCCCGGAAGCGACGTCAGCAATCCGCCGATGATTTAGAAGTGTTTAATTTCCTGCCGCGGCTATGGTCCGACGAGTTTTATAGTGCTTGGAAGGACTGGGTTGTTGGGTACGACGCCGTTTTGGTCGAAACGGAAGAAAGGGCTCGGCTTTGTGATTCTGGTGCTGCTGTGGGGTTAGTTCAAGTTGGGTTTTTGGAGAGATTGGGTGATTCTAAATTTGAGTTTAGCTACAATGTGAGGGTTATGAAGTGTTTGAGTGGAATGAGAGAGGAGGAGAGGAGAGAATTGGGTTTGTTGCTGAGAGGTTCTGGGAGGCAGTGTAGGAGGATAGGGAAGGTTTATGGGTTTTGGGGAAATGTGGAAGATGGGGTTTTGTATTTAGTGTGTGAGAGCCAGAGTGGGAGGTTTGAGGAGAAGTTGAGGGGTTTGAGAAATGGGGATGGGTTTGGGAGAGATGGGTTGGGTGGTTTTGGTGTGATTGGTATGGAGGTGTGTGAGGCGGTGATGGGGTTGCATTCGGAGGGGTTTGTTGGTGGTGGTTTTGGTGTTTCGTGTTTTGGTTTCGATGATTTTGGTCATGTTTTTGTGGATTTGAATGAGGTGTTGGTGATGGGAAGGAAGGTTTGGACAAGTGTTGGGGATAGTGTTGGTGGTAGAAAGGGAATTGGTGCTGAAGAAATGGGAGTGATGTTTGGCAGTTTATTGAAAGATGAGGCTTTTGTTAGCATGGAGGTGTTGTTTGAGGTGTTGAAGAAAGAGGGCATTGCAGTGGAATGTGAGAGCTCGAAATACATGGTTGGGTATGGCTCGGATGTTTGGTCATTAGCTTGTGTTTTGCTCAGTCTGCTTCTTGGGAAAAAGTTCAGTGAAGAGATTGGAAATATGAATCATAATTGCGATCATTCAACGTATGCAAGTTGGATTGAAAGAGTTGGTGATTTGCTGGACAGTAGATTGGGTTCTGAATATGCATCACTGAGGGTGACTCTCTGTAAATGTTTGAATTATGATCCAGCAAGTCGTCCACTAGTGATTGATGTTATGATTTGCATTAGGGAACTGATTATTAAACCTCAATATGATATCATGGCCGGTTTGGAGAGACCGGTTAAGGAGAACAGCACAAGTTGTTGCTTGATTCTGGGGGAGCTCTGTCAGATGCCCAAGAAAATGTCAGAAACACAGAAAGAACATGAGTTGCAGGGAAAAGAAGTTGGTGGAGGAGCAGACTTTGATAAGGTTGATGAGGGGAGGTCTGAGAATGGTTTTGTTGATGGACTTGCAGAGGGAAAGGTCAAATCTAAAGTTCTGCAGGGCCATCGTGACTCTATTACAGCATTAGCTGTTGGAGGAGAATTTCTATTCAGCTCCTCATTTGACAAAACCATCCATGTGTGGTCTTTGCAGGACTTCTGTCATGTACATACATTTAAAGGCCATGAGCATACCATTAAGGCTCTAATTTATGTAGATGAAGAGAAACCCTTGTGCATAAGTGGTGACAGTGGAGGTGGCATATTTGTCTGGAGCACAAGTTCCCCTCTAGGGCAAGAACCATTGAAGATACTGTATGAGCAGAAAGATTGGCGCTTTAGTGGTATTCATGCCTTGGCCTTTAGAGATGGATATATTTATACCGGCAGTGGAGACAGAACAGTAAAAGCATGGTCTATGCAGGATGGCACCATATCATGCACTATGTCTGGTCATAAATCAGTAGTTTCAACACTTACAGTTTGTGATAGTGTTCTGTATAGCGGCAGTTGGGATGGAACCATACGATTATGGAGTCTCAGCGATCACAGTCCTTTGGCAGTACTAGGGGAAGACACATCTGGAACTGTGGCTTCTGTCTTATCTCTTGCTGCTGACAGACATGTGCTCATTGCAACCCATGAAAATGGATGTCTAAAGGTCTGGAAAAATGATGTGTTTATGAAATCCATTAAAATGCACAATGGTGCAGTTTTTGCTACTGGCCTGGATGGAAAATGGCTTTTCACAGGCGGGTTGGATAAAACTGTCAATGTCCAGGAATGGTCTGGTGATGAGTTTCAAACAGATTTAAGACCTATTGGATCCATCCCCTGTGATTCTGTCATTACAACTTTGTTGTGCTGGCAAGGAAAGCTTTTCGTTGGATATGCTAATAGGAATATCATGGTGTTTTACTATGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0006996 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0009657 GO:0009658 GO:0009987 GO:0010109 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0031323 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW WD40 zf-RING_UBOX

Protein Analysis

816

Amino Acids

89.83

Weight (kDa)

5.43

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_UBOX	PF13445	6 - 48	6.6e-07	RING-type zinc-finger
WDR55	PF24796	517 - 730	6.4e-13	WDR55
WD40_Gbeta	PF25391	523 - 685	4.3e-08	G protein beta WD-40 repeat protein
Beta-prop_SCAP	PF24017	524 - 599	2.4e-06	SCAP Beta-propeller
Beta-prop_WDR3_1st	PF25173	525 - 598	1.6e-08	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	526 - 744	4.8e-24	WDR5 beta-propeller domain
WD40_Prp19	PF24814	621 - 730	8.8e-09	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	631 - 745	9.6e-07	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	632 - 766	9.6e-14	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	632 - 696	7.2e-07	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	632 - 693	1e-07	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21651
fragaria_vesca	FvH4_2g27740
prunus_persica	Prupe.1G490500_v2.0.a1 Prupe.1G490500_v2.0.a1 Prupe.1G490500_v2.0.a1
pyrus_communis	pycom15g30580
rosa_chinensis	RchiOBHm_Chr6g0296591
rosa_laevigata	RLG00000011677
rosa_multiflora	Rmu_sc0001741.1_g000020
rosa_roxburghii	Rroxscaffold_6G00390100 Rroxscaffold_7G00178750
rosa_rugosa	Rorug06G0263600
rosa_samantha	Rh6BG383500 Rh6CG388600 Rh6DG376000
rosa_wichuraiana	Rw6G032710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	283
AccB1I	GGYRCC	2 cut(s)	179, 1949
AccI	GTMKAC	1 cut(s)	50
AccII	CGCG	5 cut(s)	47, 61, 63, 188, 325
AclWI	GGATC	3 cut(s)	1271, 2340, 2353
AcoI	YGGCCR	2 cut(s)	76, 1356
AcsI	RAATTY	2 cut(s)	482, 1622
AcuI	CTGAAG	1 cut(s)	960
AcyI	GRCGYC	3 cut(s)	180, 280, 381
AfaI	GTAC	5 cut(s)	151, 167, 377, 1689, 2085
AfiI	CCNNNNNNNGG	3 cut(s)	124, 176, 1812
AflIII	ACRYGT	1 cut(s)	2143
AgeI	ACCGGT	1 cut(s)	1372
AhdI	GACNNNNNGTC	1 cut(s)	46
AhlI	ACTAGT	1 cut(s)	1294
AjnI	CCWGG	3 cut(s)	99, 2247, 2298
AjuI	GAANNNNNNNTTGG	4 cut(s)	854, 874, 886, 906
AleI	CACNNNNGTG	2 cut(s)	13, 2226
AloI	GAACNNNNNNTCC	2 cut(s)	1786, 1818
AluBI	AGCT	9 cut(s)	109, 157, 495, 1050, 1094, 1417, 1610, 1635, 2398
AluI	AGCT	9 cut(s)	109, 157, 495, 1050, 1094, 1417, 1610, 1635, 2398
Alw21I	GWGCWC	4 cut(s)	1052, 1419, 1799, 2151
Alw26I	GTCTC	4 cut(s)	122, 1363, 1908, 2063
AlwI	GGATC	3 cut(s)	1271, 2340, 2353
AoxI	GGCC	6 cut(s)	76, 1356, 1582, 1702, 1878, 2245
ApeKI	GCWGC	5 cut(s)	109, 138, 190, 431, 2132
ApoI	RAATTY	2 cut(s)	482, 1622
AsiGI	ACCGGT	1 cut(s)	1372
Asp700I	GAANNNNTTC	1 cut(s)	1127
AspLEI	GCGC	5 cut(s)	47, 63, 182, 190, 1857
AspS9I	GGNCC	2 cut(s)	333, 1582
AsuC2I	CCSGG	3 cut(s)	125, 143, 271
AsuHPI	GGTGA	7 cut(s)	485, 781, 886, 1214, 1261, 1778, 2324
AvaII	GGWCC	1 cut(s)	333
BaeGI	GKGCMC	1 cut(s)	20
BamHI	GGATCC	1 cut(s)	2345
BanI	GGYRCC	2 cut(s)	179, 1949
BanII	GRGCYC	3 cut(s)	412, 1052, 1419
BbsI	GAAGAC	1 cut(s)	2100
Bbv12I	GWGCWC	4 cut(s)	1052, 1419, 1799, 2151
BbvI	GCAGC	5 cut(s)	96, 125, 177, 418, 2119
BceAI	ACGGC	3 cut(s)	58, 193, 368
BcgI	CGANNNNNNTGC	2 cut(s)	1568, 1602
BciT130I	CCWGG	3 cut(s)	101, 2249, 2300
BcnI	CCSGG	3 cut(s)	125, 143, 271
BcoDI	GTCTC	4 cut(s)	122, 1363, 1908, 2063
BcuI	ACTAGT	1 cut(s)	1294
BfaI	CTAG	3 cut(s)	1295, 1811, 2087
BfmI	CTRYAG	2 cut(s)	29, 1577
BfoI	RGCGCY	2 cut(s)	183, 1858
BmcAI	AGTACT	1 cut(s)	2085
Bme1390I	CCNGG	6 cut(s)	101, 125, 143, 271, 2249, 2300
Bme18I	GGWCC	1 cut(s)	333
BmeRI	GACNNNNNGTC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	333, 1582
BmiI	GGNNCC	5 cut(s)	6, 181, 1951, 2041, 2347
BmrFI	CCNGG	6 cut(s)	101, 125, 143, 271, 2249, 2300
BmrI	ACTGGG	2 cut(s)	14, 373
BmsI	GCATC	2 cut(s)	1247, 1416
BmuI	ACTGGG	2 cut(s)	14, 373
BoxI	GACNNNNGTC	1 cut(s)	1680
BpiI	GAAGAC	1 cut(s)	2100
BplI	GAGNNNNNCTC	2 cut(s)	1237, 1269
BpmI	CTGGAG	1 cut(s)	1813
BpuMI	CCSGG	3 cut(s)	125, 143, 271
BsaHI	GRCGYC	3 cut(s)	180, 280, 381
BsaI	GGTCTC	1 cut(s)	1363
BsaJI	CCNNGG	3 cut(s)	269, 323, 1875
BsaWI	WCCGGW	2 cut(s)	10, 1372
BsaXI	ACNNNNNCTCC	6 cut(s)	571, 601, 989, 1019, 1786, 1816
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 176, 1812
Bse118I	RCCGGY	3 cut(s)	1358, 1372, 1904
Bse1I	ACTGG	3 cut(s)	20, 368, 2248
Bse3DI	GCAATG	2 cut(s)	1029, 2151
BseBI	CCWGG	3 cut(s)	101, 2249, 2300
BseDI	CCNNGG	3 cut(s)	269, 323, 1875
BseGI	GGATG	8 cut(s)	712, 1084, 1653, 1951, 2041, 2177, 2257, 2349
BseLI	CCNNNNNNNGG	3 cut(s)	124, 176, 1812
BseMI	GCAATG	2 cut(s)	1029, 2151
BseMII	CTCAG	7 cut(s)	167, 185, 557, 1120, 1235, 1515, 2074
BseNI	ACTGG	3 cut(s)	20, 368, 2248
BseRI	GAGGAG	7 cut(s)	551, 554, 559, 692, 1503, 1627, 1632
BseSI	GKGCMC	1 cut(s)	20
BseXI	GCAGC	5 cut(s)	96, 125, 177, 418, 2119
BseYI	CCCAGC	1 cut(s)	67
BsgI	GTGCAG	1 cut(s)	2250
Bsh1236I	CGCG	5 cut(s)	47, 61, 63, 188, 325
BshFI	GGCC	6 cut(s)	78, 1358, 1584, 1704, 1880, 2247
BshNI	GGYRCC	2 cut(s)	179, 1949
BshTI	ACCGGT	1 cut(s)	1372
BsiHKAI	GWGCWC	4 cut(s)	1052, 1419, 1799, 2151
BsiSI	CCGG	7 cut(s)	11, 125, 143, 271, 1359, 1373, 1905
BslI	CCNNNNNNNGG	3 cut(s)	124, 176, 1812
BsmAI	GTCTC	4 cut(s)	122, 1363, 1908, 2063
BsmBI	CGTCTC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	6 cut(s)	78, 1358, 1584, 1704, 1880, 2247
Bso31I	GGTCTC	1 cut(s)	1363
Bsp1286I	GDGCHC	6 cut(s)	20, 412, 1052, 1419, 1799, 2151
Bsp1407I	TGTACA	1 cut(s)	1687
Bsp143I	GATC	4 cut(s)	1165, 1276, 2065, 2345
BspANI	GGCC	6 cut(s)	78, 1358, 1584, 1704, 1880, 2247
BspCNI	CTCAG	7 cut(s)	166, 184, 558, 1119, 1236, 1516, 2073
BspFNI	CGCG	5 cut(s)	47, 61, 63, 188, 325
BspLI	GGNNCC	5 cut(s)	6, 181, 1951, 2041, 2347
BspMAI	CTGCAG	2 cut(s)	33, 1581
BspPI	GGATC	3 cut(s)	1271, 2340, 2353
BspT107I	GGYRCC	2 cut(s)	179, 1949
BspTNI	GGTCTC	1 cut(s)	1363
BsrDI	GCAATG	2 cut(s)	1029, 2151
BsrFI	RCCGGY	3 cut(s)	1358, 1372, 1904
BsrGI	TGTACA	1 cut(s)	1687
BsrI	ACTGG	3 cut(s)	20, 368, 2248
BssAI	RCCGGY	3 cut(s)	1358, 1372, 1904
BssECI	CCNNGG	3 cut(s)	269, 323, 1875
BssMI	GATC	4 cut(s)	1165, 1276, 2065, 2345
BssNI	GRCGYC	3 cut(s)	180, 280, 381
BssT1I	CCWWGG	1 cut(s)	1875
Bst2UI	CCWGG	3 cut(s)	101, 2249, 2300
Bst4CI	ACNGT	8 cut(s)	1217, 1772, 1836, 1924, 2002, 2072, 2110, 2290
Bst6I	CTCTTC	2 cut(s)	1131, 1737
BstACI	GRCGYC	3 cut(s)	180, 280, 381
BstAPI	GCANNNNNTGC	1 cut(s)	2237
BstAUI	TGTACA	1 cut(s)	1687
BstC8I	GCNNGC	3 cut(s)	65, 88, 2387
BstDEI	CTNAG	7 cut(s)	153, 171, 566, 1106, 1244, 1524, 2060
BstDSI	CCRYGG	1 cut(s)	323
BstF5I	GGATG	8 cut(s)	712, 1084, 1653, 1951, 2041, 2177, 2257, 2349
BstFNI	CGCG	5 cut(s)	47, 61, 63, 188, 325
BstH2I	RGCGCY	2 cut(s)	183, 1858
BstHHI	GCGC	5 cut(s)	47, 63, 182, 190, 1857
BstKTI	GATC	4 cut(s)	1168, 1279, 2068, 2348
BstMAI	GTCTC	4 cut(s)	122, 1363, 1908, 2063
BstMBI	GATC	4 cut(s)	1165, 1276, 2065, 2345
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 283, 1111, 2237, 2395
BstNI	CCWGG	3 cut(s)	101, 2249, 2300
BstNSI	RCATGY	1 cut(s)	2147
BstPAI	GACNNNNGTC	1 cut(s)	1680
BstSCI	CCNGG	6 cut(s)	99, 123, 141, 269, 2247, 2298
BstSFI	CTRYAG	2 cut(s)	29, 1577
BstSLI	GKGCMC	1 cut(s)	20
BstUI	CGCG	5 cut(s)	47, 61, 63, 188, 325
BstV1I	GCAGC	5 cut(s)	96, 125, 177, 418, 2119
BstV2I	GAAGAC	1 cut(s)	2100
BstX2I	RGATCY	1 cut(s)	2345
BstXI	CCANNNNNNTGG	1 cut(s)	2168
BstYI	RGATCY	1 cut(s)	2345
BsuRI	GGCC	6 cut(s)	78, 1358, 1584, 1704, 1880, 2247
BtgI	CCRYGG	1 cut(s)	323
BtsCI	GGATG	8 cut(s)	712, 1084, 1653, 1951, 2041, 2177, 2257, 2349
BtsI	GCAGTG	3 cut(s)	590, 1041, 1915
BtsIMutI	CAGTG	7 cut(s)	27, 590, 1041, 1138, 1241, 1777, 1915
Cac8I	GCNNGC	3 cut(s)	65, 88, 2387
CfoI	GCGC	5 cut(s)	47, 63, 182, 190, 1857
Cfr10I	RCCGGY	3 cut(s)	1358, 1372, 1904
Cfr13I	GGNCC	2 cut(s)	333, 1582
Cfr42I	CCGCGG	1 cut(s)	326
CseI	GACGC	3 cut(s)	36, 272, 389
Csp6I	GTAC	5 cut(s)	150, 166, 376, 1688, 2084
CspAI	ACCGGT	1 cut(s)	1372
CviQI	GTAC	5 cut(s)	150, 166, 376, 1688, 2084
DdeI	CTNAG	7 cut(s)	153, 171, 566, 1106, 1244, 1524, 2060
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	4 cut(s)	1167, 1278, 2067, 2347
DpnII	GATC	4 cut(s)	1165, 1276, 2065, 2345
DraI	TTTAAA	1 cut(s)	1699
DriI	GACNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	2 cut(s)	76, 1356
Eam1104I	CTCTTC	2 cut(s)	1131, 1737
Eam1105I	GACNNNNNGTC	1 cut(s)	46
EarI	CTCTTC	2 cut(s)	1131, 1737
EciI	GGCGGA	2 cut(s)	225, 280
Ecl136II	GAGCTC	2 cut(s)	1050, 1417
Eco130I	CCWWGG	1 cut(s)	1875
Eco24I	GRGCYC	3 cut(s)	412, 1052, 1419
Eco31I	GGTCTC	1 cut(s)	1363
Eco32I	GATATC	1 cut(s)	1351
Eco47I	GGWCC	1 cut(s)	333
Eco53kI	GAGCTC	2 cut(s)	1050, 1417
Eco57I	CTGAAG	1 cut(s)	960
EcoICRI	GAGCTC	2 cut(s)	1050, 1417
EcoRII	CCWGG	3 cut(s)	99, 2247, 2298
EcoRV	GATATC	1 cut(s)	1351
EcoT14I	CCWWGG	1 cut(s)	1875
EcoT22I	ATGCAT	1 cut(s)	1240
EcoT38I	GRGCYC	3 cut(s)	412, 1052, 1419
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	1875
Esp3I	CGTCTC	1 cut(s)	122
FalI	AAGNNNNNCTT	2 cut(s)	2382, 2414
FauI	CCCGC	1 cut(s)	2267
FblI	GTMKAC	1 cut(s)	50
FokI	GGATG	8 cut(s)	719, 1091, 1640, 1958, 2048, 2184, 2264, 2336
FriOI	GRGCYC	3 cut(s)	412, 1052, 1419
FspBI	CTAG	3 cut(s)	1295, 1811, 2087
GlaI	GCGC	5 cut(s)	46, 62, 181, 189, 1856
GsaI	CCCAGC	1 cut(s)	71
GsuI	CTGGAG	1 cut(s)	1813
HaeII	RGCGCY	2 cut(s)	183, 1858
HaeIII	GGCC	6 cut(s)	78, 1358, 1584, 1704, 1880, 2247
HapII	CCGG	7 cut(s)	11, 125, 143, 271, 1359, 1373, 1905
HgaI	GACGC	3 cut(s)	36, 272, 389
HhaI	GCGC	5 cut(s)	47, 63, 182, 190, 1857
Hin1I	GRCGYC	3 cut(s)	180, 280, 381
Hin6I	GCGC	5 cut(s)	45, 61, 180, 188, 1855
HinP1I	GCGC	5 cut(s)	45, 61, 180, 188, 1855
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	2396
HpaII	CCGG	7 cut(s)	11, 125, 143, 271, 1359, 1373, 1905
HphI	GGTGA	7 cut(s)	485, 781, 886, 1214, 1261, 1778, 2324
Hpy166II	GTNNAC	3 cut(s)	51, 150, 1292
Hpy188I	TCNGA	9 cut(s)	174, 262, 337, 787, 1078, 1231, 1425, 1444, 1525
Hpy188III	TCNNGA	4 cut(s)	1589, 1792, 2103, 2185
Hpy8I	GTNNAC	3 cut(s)	51, 150, 1292
Hpy99I	CGWCG	7 cut(s)	44, 52, 55, 266, 282, 341, 383
HpyAV	CCTTC	5 cut(s)	218, 352, 595, 876, 880
HpyCH4III	ACNGT	8 cut(s)	1217, 1772, 1836, 1924, 2002, 2072, 2110, 2290
HpyCH4IV	ACGT	2 cut(s)	280, 1175
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 283, 1111, 2237, 2395
HpyF3I	CTNAG	7 cut(s)	153, 171, 566, 1106, 1244, 1524, 2060
HpySE526I	ACGT	2 cut(s)	280, 1175
Hsp92I	GRCGYC	3 cut(s)	180, 280, 381
HspAI	GCGC	5 cut(s)	45, 61, 180, 188, 1855
KasI	GGCGCC	1 cut(s)	179
KspI	CCGCGG	1 cut(s)	326
Kzo9I	GATC	4 cut(s)	1165, 1276, 2065, 2345
LmnI	GCTCC	6 cut(s)	4, 271, 1414, 1490, 1640, 1794
Lsp1109I	GCAGC	5 cut(s)	96, 125, 177, 418, 2119
LweI	GCATC	2 cut(s)	1247, 1416
MaeI	CTAG	3 cut(s)	1295, 1811, 2087
MaeII	ACGT	2 cut(s)	280, 1175
MaeIII	GTNAC	3 cut(s)	1249, 1589, 1766
MalI	GATC	4 cut(s)	1167, 1278, 2067, 2347
MboI	GATC	4 cut(s)	1165, 1276, 2065, 2345
MboII	GAAGA	8 cut(s)	413, 641, 953, 1030, 1148, 1754, 1840, 2105
MflI	RGATCY	1 cut(s)	2345
MhlI	GDGCHC	6 cut(s)	20, 412, 1052, 1419, 1799, 2151
MluCI	AATT	9 cut(s)	256, 313, 482, 551, 930, 1159, 1270, 1622, 1728
Mly113I	GGCGCC	1 cut(s)	180
MlyI	GAGTC	3 cut(s)	1246, 1586, 2065
MmeI	TCCRAC	6 cut(s)	285, 360, 1166, 1594, 2259, 2386
Mph1103I	ATGCAT	1 cut(s)	1240
MroXI	GAANNNNTTC	1 cut(s)	1127
MseI	TTAA	7 cut(s)	312, 1335, 1377, 1698, 1719, 2214, 2333
MslI	CAYNNNNRTG	7 cut(s)	13, 998, 1034, 1658, 2166, 2216, 2226
MspA1I	CMGCKG	1 cut(s)	325
MspI	CCGG	7 cut(s)	11, 125, 143, 271, 1359, 1373, 1905
MspR9I	CCNGG	6 cut(s)	101, 125, 143, 271, 2249, 2300
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	3 cut(s)	101, 2249, 2300
MvnI	CGCG	5 cut(s)	47, 61, 63, 188, 325
MwoI	GCNNNNNNNGC	5 cut(s)	96, 283, 1111, 2237, 2395
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	3 cut(s)	125, 143, 271
NdeII	GATC	4 cut(s)	1165, 1276, 2065, 2345
NlaIV	GGNNCC	5 cut(s)	6, 181, 1951, 2041, 2347
NmeAIII	GCCGAG	2 cut(s)	62, 391
NmuCI	GTSAC	3 cut(s)	1249, 1589, 1766
NsiI	ATGCAT	1 cut(s)	1240
NspI	RCATGY	1 cut(s)	2147
OliI	CACNNNNGTG	2 cut(s)	13, 2226
PciI	ACATGT	1 cut(s)	2143
PctI	GAATGC	1 cut(s)	781
PdmI	GAANNNNTTC	1 cut(s)	1127
PfeI	GAWTC	7 cut(s)	55, 133, 422, 476, 1153, 1405, 2360
PfoI	TCCNGGA	1 cut(s)	2298
PinAI	ACCGGT	1 cut(s)	1372
PleI	GAGTC	3 cut(s)	1246, 1586, 2064
PluTI	GGCGCC	1 cut(s)	183
PpsI	GAGTC	3 cut(s)	1246, 1586, 2064
PscI	ACATGT	1 cut(s)	2143
PshAI	GACNNNNGTC	1 cut(s)	1680
Psp124BI	GAGCTC	2 cut(s)	1052, 1419
Psp6I	CCWGG	3 cut(s)	99, 2247, 2298
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	3 cut(s)	99, 2247, 2298
PspN4I	GGNNCC	5 cut(s)	6, 181, 1951, 2041, 2347
PspPI	GGNCC	2 cut(s)	333, 1582
PsrI	GAACNNNNNNTAC	2 cut(s)	1210, 1242
PstI	CTGCAG	2 cut(s)	33, 1581
PsuI	RGATCY	1 cut(s)	2345
RsaI	GTAC	5 cut(s)	151, 167, 377, 1689, 2085
RsaNI	GTAC	5 cut(s)	150, 166, 376, 1688, 2084
RseI	CAYNNNNRTG	7 cut(s)	13, 998, 1034, 1658, 2166, 2216, 2226
SacI	GAGCTC	2 cut(s)	1052, 1419
SacII	CCGCGG	1 cut(s)	326
SalI	GTCGAC	1 cut(s)	49
SaqAI	TTAA	7 cut(s)	312, 1335, 1377, 1698, 1719, 2214, 2333
Sau3AI	GATC	4 cut(s)	1165, 1276, 2065, 2345
Sau96I	GGNCC	2 cut(s)	333, 1582
ScaI	AGTACT	1 cut(s)	2085
SchI	GAGTC	3 cut(s)	1246, 1586, 2065
ScrFI	CCNGG	6 cut(s)	101, 125, 143, 271, 2249, 2300
SduI	GDGCHC	6 cut(s)	20, 412, 1052, 1419, 1799, 2151
SfaNI	GCATC	2 cut(s)	1247, 1416
SfcI	CTRYAG	2 cut(s)	29, 1577
SfoI	GGCGCC	1 cut(s)	181
Sfr303I	CCGCGG	1 cut(s)	326
SgrBI	CCGCGG	1 cut(s)	326
SgrDI	CGTCGACG	1 cut(s)	49
SinI	GGWCC	1 cut(s)	333
SmiMI	CAYNNNNRTG	7 cut(s)	13, 998, 1034, 1658, 2166, 2216, 2226
SpeI	ACTAGT	1 cut(s)	1294
Sse9I	AATT	9 cut(s)	256, 313, 482, 551, 930, 1159, 1270, 1622, 1728
SspDI	GGCGCC	1 cut(s)	179
SspMI	CTAG	3 cut(s)	1295, 1811, 2087
SstI	GAGCTC	2 cut(s)	1052, 1419
StyD4I	CCNGG	6 cut(s)	99, 123, 141, 269, 2247, 2298
StyI	CCWWGG	1 cut(s)	1875
TaaI	ACNGT	8 cut(s)	1217, 1772, 1836, 1924, 2002, 2072, 2110, 2290
TaiI	ACGT	2 cut(s)	283, 1178
TaqI	TCGA	5 cut(s)	50, 204, 393, 831, 1052
TasI	AATT	9 cut(s)	256, 313, 482, 551, 930, 1159, 1270, 1622, 1728
TatI	WGTACW	3 cut(s)	149, 1687, 2083
TauI	GCSGC	7 cut(s)	78, 185, 188, 241, 325, 328, 2028
TfiI	GAWTC	7 cut(s)	55, 133, 422, 476, 1153, 1405, 2360
Tru1I	TTAA	7 cut(s)	312, 1335, 1377, 1698, 1719, 2214, 2333
Tru9I	TTAA	7 cut(s)	312, 1335, 1377, 1698, 1719, 2214, 2333
TscAI	CASTG	7 cut(s)	27, 590, 1041, 1138, 1248, 1777, 1915
TseFI	GTSAC	3 cut(s)	1249, 1589, 1766
TseI	GCWGC	5 cut(s)	109, 138, 190, 431, 2132
Tsp45I	GTSAC	3 cut(s)	1249, 1589, 1766
TspDTI	ATGAA	6 cut(s)	527, 1166, 1755, 1859, 2178, 2219
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	7 cut(s)	27, 590, 1041, 1138, 1248, 1777, 1915
VpaK11BI	GGWCC	1 cut(s)	333
XapI	RAATTY	2 cut(s)	482, 1622
XceI	RCATGY	1 cut(s)	2147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2306
XmiI	GTMKAC	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	1127
XspI	CTAG	3 cut(s)	1295, 1811, 2087
ZraI	GACGTC	1 cut(s)	281
ZrmI	AGTACT	1 cut(s)	2085
Zsp2I	ATGCAT	1 cut(s)	1240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.