Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011851

Physical Location & Seq

Genomic Coordinates Reverse (-)

12050891 .. 12057768

Gene Structure 6878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011707

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2355 bp

ATGGTGTGGTATATTCTGTGTGGTTTTGCATTGTTGTTTATGAACCTGGAGACCTCTCTCGCCGGCGGCAGCAACAATGTCACGTACGATGGCCGGTCTCTGATAATCGACGGTCAGCATAAGATTCTCTTCTCCGGTTCCATTCACTACCCCAGAAGCACTCCTCAGATGTGGCCATCTCTGATAGCCAAAGCCAAAGAAGGGGGAATAGATGTGATACAAACATACGTGTTTTGGAACCTTCATGAACCCGAAAAAGGACAGTTTGTTGTCCATGGAAGACGTGACATAGTAGCCTTTATAAAGGAAGTCCACAGACAAGGCCTATATGTGTGCCTTAGAATTGGACCCTTCATTCAGAGTGAATGGTCTTATGGTGGTTTTCCAGTTTGGTTAAGGAACATTCCGGGTATTGTCTTCCGGTCTGATAATGAACCGTATAAGGCTGAAATGCAGAGGTTTACAGCAAAAATAGTAGACCTAATGAAATCAAATGGACTGTACGCTTCACAAGGCGGACCGATTATATTGTCACAGATTGAGAACGAGTACCAAAATGTGGAAGCGGCGTTTCATGAAAAGGGACCTCCTTATGTTCTTTGGGCTGCATCCATGGCGGAGGGCCTTCAAACTGGTGTGCCCTGGGTTATGTGCAAGCAAAATGATGCTCCCGGCGCTGTGATCAATGCATGTAATGGGATGAAGTGTGGAGAAACCTTTGCTGGCCCAAATGCCCCTAATAAGCCAGCAATTTGGACAGAGGACTGGACAAGCCAATACCTTGTATATGGTGAAGAACCATACCTCAGAAGAGCTGAAGATATTGCATTTCATGTTGCACTCTTTATTGCAAAGAATAAAGGAAGCTACGTAAACTACTACATGTATCATGGAGGAACCAATTTTGGAAGAACAACTTCCGAGTTTGTGACTACTAGTTATTACGATGAAGCTCCTCTTGATGAGTATGGTATACCAAAGGAACCAAAATGGAGTCATCTCAAGGAGTTGCATGCTGCAGTGAAGTTGTCCATCAGTCCTCTACTTGCTGGAGAACAAACCGTTGTCAATTTGGGTCAATTTCAAACAGCCTATGTCTACAAAGCTCAATCTGGTGAATGTGCTGCTTACTTGGTGAACAATGGCTCTAAAGATGCCACTGTCCAATTTCAGAACTCTCCTTATCAATTGTCTCCAAAGTCAATTAGTATCTTACCAGACTGTAAAAATGTGGCTTTCAACACTGGAAAGGTAAGCGTACAACATGCAACAAGATCATGGACACCAGCTCAAAAGTTTGATTCACCTCAGAATTGGCAAGAGTACAAAGAAGCCATTCCCACTTATGATGACACCTCTCTGAGAGAGAACATAATAGTAGACCAAATGAGAACTACAAATGATCGTTCTGATTATCTGTGGTACACTTTCAGCTTTCAGCATGACTCTCCTAATCCAGAATCCACATTAAACGTGCAAACACGCGGACATATCTTGCATTCATTCGTAAACGGAGTACTTGTAGGATCTGGACATGGAGTACTCAGGAATACGGGTTTTTCCTTGGAGAATAAGATTACTCTGAATAAGGGGATAAACCATGTCTCCCTGCTAAGTGCAATGGTTGGACTGCCGGACTCTGGAGCATATCTAGAGCGTAGAGATTATGGATTACAGAGTGTGAAGATTGACGATAAAGATTTCGGCACATATGCATGGGGATACCAGGTCGGGTTGTTTGGAGAGAACTTACAAATCCATACAGACACAAGTAAAGTTCAATGGAACAGATTAAGCTATTCAAAACAACCACTGACATGGTATAAGACTTTATTTGATGCACCAGCAGGAAATGACCCTGTTGCATTATATCTTGGTTCCATGGGAAAGGGTGAAGTTTGGATCAATGGTCAAAGCATTGGTCGATATTGGGTCTCCTTCCACACCCCAAAAGGGACTCCTTCACAGACATGGTACCATGTACCTCGATCTTTCCTTAAGCCTACTGGAAACTTGTTAGTTCTCATTGAAGAAGAAACTGGAGACCCGGTTAAGATATCTCTGGACAAAGTATCAGTACCAAAAGCCTCTCCGCCAAGCCCTACGAACCGGCAAGTTGTTGCCAGCAGCCTTCTTTTGCCTCACCGACTCAGCCTACCTGTGTCTGACTTGCTACTCGAAGATCCACAATGCCAACAAGCTCGCGTTGCTCCACCAGTGCGTGTAGATGTTCAAGATCCGAGTGCCGTCAGCGTTTTTCGGTGTTCCGCCATCGACGTTTCTAGCGTTCTCATGCTCCTTTGCCTCGGCTTCGTTGTCTCTAAGTCTAGGATTCACCTCTGCTCTCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

785

Amino Acids

87.54

Weight (kDa)

6.73

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	33 - 340	3.3e-111	Glycosyl hydrolases family 35
GHD	PF17834	363 - 418	4.1e-22	Beta-sandwich domain in beta galactosidase
BetaGal_gal-bd	PF21467	605 - 671	1.4e-24	Beta-galactosidase, galactose-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77410 AT1G77410 AT1G77410 AT1G77410
fragaria_vesca	FvH4_2g27470
prunus_persica	Prupe.1G492800_v2.0.a1 Prupe.1G492800_v2.0.a1 Prupe.1G492800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296311
rosa_laevigata	RLG00000011707
rosa_multiflora	Rmu_sc0001478.1_g000001 Rmu_sc0004708.1_g000001 Rmu_sc0012554.1_g000001
rosa_roxburghii	Rroxscaffold_7G00171640 Rroxscaffold_7G00178440
rosa_rugosa	Rorug06G0261000
rosa_samantha	Rh6BG380800 Rh6CG386000
rosa_wichuraiana	Rw6G032490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	302
Acc65I	GGTACC	1 cut(s)	1974
AccB1I	GGYRCC	1 cut(s)	1974
AccB7I	CCANNNNNTGG	1 cut(s)	559
AccI	GTMKAC	4 cut(s)	477, 973, 1098, 1380
AccII	CGCG	2 cut(s)	1485, 2205
AciI	CCGC	7 cut(s)	66, 516, 566, 617, 1485, 2093, 2268
AclWI	GGATC	4 cut(s)	1534, 1910, 2177, 2231
AcoI	YGGCCR	2 cut(s)	91, 173
AcuI	CTGAAG	1 cut(s)	837
AfiI	CCNNNNNNNGG	5 cut(s)	201, 257, 559, 1640, 1953
AflII	CTTAAG	1 cut(s)	1997
AflIII	ACRYGT	2 cut(s)	228, 882
AgsI	TTSAA	7 cut(s)	629, 1085, 1240, 1781, 1803, 2030, 2234
AhlI	ACTAGT	1 cut(s)	935
AjiI	CACGTC	1 cut(s)	284
AjnI	CCWGG	3 cut(s)	45, 641, 1725
AluBI	AGCT	8 cut(s)	815, 867, 953, 1106, 1289, 1434, 1797, 2201
AluI	AGCT	8 cut(s)	815, 867, 953, 1106, 1289, 1434, 1797, 2201
Alw26I	GTCTC	7 cut(s)	44, 102, 1197, 1609, 1939, 2037, 2323
AlwI	GGATC	4 cut(s)	1534, 1910, 2177, 2231
AoxI	GGCC	5 cut(s)	91, 173, 322, 622, 724
ApeKI	GCWGC	5 cut(s)	69, 605, 1016, 1124, 2127
ArsI	GACNNNNNNTTYG	2 cut(s)	1906, 1938
Asp700I	GAANNNNTTC	2 cut(s)	916, 1335
Asp718I	GGTACC	1 cut(s)	1974
AspLEI	GCGC	1 cut(s)	677
AspS9I	GGNCC	5 cut(s)	347, 518, 584, 622, 725
AsuC2I	CCSGG	3 cut(s)	408, 672, 2048
AsuHPI	GGTGA	7 cut(s)	803, 1127, 1147, 1296, 1904, 2135, 2327
AvaII	GGWCC	3 cut(s)	347, 518, 584
BaeGI	GKGCMC	1 cut(s)	642
BalI	TGGCCA	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	1974
BbsI	GAAGAC	2 cut(s)	286, 409
BbvI	GCAGC	5 cut(s)	81, 592, 1003, 1111, 2139
BccI	CCATC	4 cut(s)	83, 184, 1040, 2279
BceAI	ACGGC	1 cut(s)	2231
BciT130I	CCWGG	3 cut(s)	47, 643, 1727
BciVI	GTATCC	1 cut(s)	1715
BclI	TGATCA	1 cut(s)	681
BcnI	CCSGG	3 cut(s)	408, 672, 2048
BcoDI	GTCTC	7 cut(s)	44, 102, 1197, 1609, 1939, 2037, 2323
BcuI	ACTAGT	1 cut(s)	935
BfaI	CTAG	4 cut(s)	936, 1652, 2283, 2328
BfmI	CTRYAG	1 cut(s)	1017
BfoI	RGCGCY	1 cut(s)	678
BfrI	CTTAAG	1 cut(s)	1997
BfuI	GTATCC	1 cut(s)	1715
BisI	GCNGC	7 cut(s)	67, 70, 567, 606, 1017, 1125, 2128
BlsI	GCNGC	7 cut(s)	68, 71, 568, 607, 1018, 1126, 2129
BmcAI	AGTACT	2 cut(s)	1518, 1542
Bme1390I	CCNGG	6 cut(s)	47, 408, 643, 672, 1727, 2048
Bme18I	GGWCC	3 cut(s)	347, 518, 584
BmgBI	CACGTC	1 cut(s)	284
BmgT120I	GGNCC	5 cut(s)	347, 518, 584, 622, 725
BmiI	GGNNCC	8 cut(s)	139, 239, 349, 585, 898, 984, 1879, 1976
BmrFI	CCNGG	6 cut(s)	47, 408, 643, 672, 1727, 2048
BmsI	GCATC	4 cut(s)	617, 655, 1144, 1828
BpiI	GAAGAC	2 cut(s)	286, 409
BpmI	CTGGAG	4 cut(s)	68, 1071, 1662, 2061
BpuEI	CTTGAG	1 cut(s)	986
BpuMI	CCSGG	3 cut(s)	408, 672, 2048
BsaAI	YACGTR	3 cut(s)	84, 229, 871
BsaI	GGTCTC	4 cut(s)	44, 102, 1939, 2037
BsaJI	CCNNGG	7 cut(s)	274, 612, 641, 642, 1563, 1881, 2305
BsaWI	WCCGGW	2 cut(s)	134, 420
BsaXI	ACNNNNNCTCC	6 cut(s)	1506, 1536, 1589, 1619, 2034, 2064
Bsc4I	CCNNNNNNNGG	5 cut(s)	201, 257, 559, 1640, 1953
Bse118I	RCCGGY	3 cut(s)	62, 93, 2109
Bse1I	ACTGG	7 cut(s)	386, 637, 770, 1249, 2011, 2044, 2216
Bse3DI	GCAATG	1 cut(s)	1626
BseBI	CCWGG	3 cut(s)	47, 643, 1727
BseDI	CCNNGG	7 cut(s)	274, 612, 641, 642, 1563, 1881, 2305
BseGI	GGATG	2 cut(s)	608, 705
BseLI	CCNNNNNNNGG	5 cut(s)	201, 257, 559, 1640, 1953
BseMI	GCAATG	1 cut(s)	1626
BseMII	CTCAG	6 cut(s)	179, 820, 1322, 1352, 1558, 2164
BseNI	ACTGG	7 cut(s)	386, 637, 770, 1249, 2011, 2044, 2216
BseRI	GAGGAG	2 cut(s)	153, 945
BseSI	GKGCMC	1 cut(s)	642
BseXI	GCAGC	5 cut(s)	81, 592, 1003, 1111, 2139
Bsh1236I	CGCG	2 cut(s)	1485, 2205
BshFI	GGCC	5 cut(s)	93, 175, 324, 624, 726
BshNI	GGYRCC	1 cut(s)	1974
BsiSI	CCGG	9 cut(s)	63, 94, 135, 407, 421, 672, 1634, 2048, 2110
BsiWI	CGTACG	1 cut(s)	84
BslFI	GGGAC	2 cut(s)	597, 1969
BslI	CCNNNNNNNGG	5 cut(s)	201, 257, 559, 1640, 1953
BsmAI	GTCTC	7 cut(s)	44, 102, 1197, 1609, 1939, 2037, 2323
BsmFI	GGGAC	2 cut(s)	597, 1969
BsmI	GAATGC	1 cut(s)	1498
BsnI	GGCC	5 cut(s)	93, 175, 324, 624, 726
Bso31I	GGTCTC	4 cut(s)	44, 102, 1939, 2037
Bsp1286I	GDGCHC	1 cut(s)	642
Bsp143I	GATC	8 cut(s)	681, 1274, 1402, 1526, 1902, 1988, 2182, 2236
Bsp19I	CCATGG	3 cut(s)	274, 612, 1881
BspACI	CCGC	7 cut(s)	66, 516, 566, 617, 1485, 2093, 2268
BspANI	GGCC	5 cut(s)	93, 175, 324, 624, 726
BspCNI	CTCAG	6 cut(s)	178, 819, 1321, 1353, 1557, 2163
BspFNI	CGCG	2 cut(s)	1485, 2205
BspHI	TCATGA	2 cut(s)	244, 574
BspLI	GGNNCC	8 cut(s)	139, 239, 349, 585, 898, 984, 1879, 1976
BspMAI	CTGCAG	1 cut(s)	1021
BspPI	GGATC	4 cut(s)	1534, 1910, 2177, 2231
BspQI	GCTCTTC	1 cut(s)	805
BspT107I	GGYRCC	1 cut(s)	1974
BspTI	CTTAAG	1 cut(s)	1997
BspTNI	GGTCTC	4 cut(s)	44, 102, 1939, 2037
BsrDI	GCAATG	1 cut(s)	1626
BsrFI	RCCGGY	3 cut(s)	62, 93, 2109
BsrI	ACTGG	7 cut(s)	386, 637, 770, 1249, 2011, 2044, 2216
BssAI	RCCGGY	3 cut(s)	62, 93, 2109
BssECI	CCNNGG	7 cut(s)	274, 612, 641, 642, 1563, 1881, 2305
BssMI	GATC	8 cut(s)	681, 1274, 1402, 1526, 1902, 1988, 2182, 2236
BssNAI	GTATAC	1 cut(s)	974
BssT1I	CCWWGG	4 cut(s)	274, 612, 1563, 1881
Bst1107I	GTATAC	1 cut(s)	974
Bst2UI	CCWGG	3 cut(s)	47, 643, 1727
Bst4CI	ACNGT	7 cut(s)	113, 264, 438, 501, 1063, 1162, 1223
Bst6I	CTCTTC	2 cut(s)	134, 805
BstAFI	CTTAAG	1 cut(s)	1997
BstBAI	YACGTR	3 cut(s)	84, 229, 871
BstC8I	GCNNGC	7 cut(s)	64, 656, 724, 747, 1014, 2125, 2203
BstDEI	CTNAG	9 cut(s)	165, 338, 806, 1308, 1361, 1544, 1613, 2150, 2322
BstDSI	CCRYGG	3 cut(s)	274, 612, 1881
BstF5I	GGATG	2 cut(s)	608, 705
BstFNI	CGCG	2 cut(s)	1485, 2205
BstH2I	RGCGCY	1 cut(s)	678
BstHHI	GCGC	1 cut(s)	677
BstKTI	GATC	8 cut(s)	684, 1277, 1405, 1529, 1905, 1991, 2185, 2239
BstMAI	GTCTC	7 cut(s)	44, 102, 1197, 1609, 1939, 2037, 2323
BstMBI	GATC	8 cut(s)	681, 1274, 1402, 1526, 1902, 1988, 2182, 2236
BstMWI	GCNNNNNNNGC	3 cut(s)	614, 674, 2207
BstNI	CCWGG	3 cut(s)	47, 643, 1727
BstNSI	RCATGY	4 cut(s)	693, 886, 1016, 1268
BstSCI	CCNGG	6 cut(s)	45, 406, 641, 670, 1725, 2046
BstSFI	CTRYAG	1 cut(s)	1017
BstSLI	GKGCMC	1 cut(s)	642
BstSNI	TACGTA	1 cut(s)	871
BstUI	CGCG	2 cut(s)	1485, 2205
BstV1I	GCAGC	5 cut(s)	81, 592, 1003, 1111, 2139
BstV2I	GAAGAC	2 cut(s)	286, 409
BstX2I	RGATCY	3 cut(s)	1526, 2182, 2236
BstXI	CCANNNNNNTGG	2 cut(s)	753, 1818
BstYI	RGATCY	3 cut(s)	1526, 2182, 2236
BstZ17I	GTATAC	1 cut(s)	974
BsuI	GTATCC	1 cut(s)	1715
BsuRI	GGCC	5 cut(s)	93, 175, 324, 624, 726
BtgI	CCRYGG	3 cut(s)	274, 612, 1881
BtrI	CACGTC	1 cut(s)	284
BtsCI	GGATG	2 cut(s)	608, 705
BtsI	GCAGTG	1 cut(s)	1026
BtsIMutI	CAGTG	5 cut(s)	1026, 1158, 1242, 1811, 2223
Cac8I	GCNNGC	7 cut(s)	64, 656, 724, 747, 1014, 2125, 2203
CciI	TCATGA	2 cut(s)	244, 574
CfoI	GCGC	1 cut(s)	677
Cfr10I	RCCGGY	3 cut(s)	62, 93, 2109
Cfr13I	GGNCC	5 cut(s)	347, 518, 584, 622, 725
CpoI	CGGWCCG	1 cut(s)	518
CsiI	ACCWGGT	1 cut(s)	1725
CspI	CGGWCCG	1 cut(s)	518
DdeI	CTNAG	9 cut(s)	165, 338, 806, 1308, 1361, 1544, 1613, 2150, 2322
DpnI	GATC	8 cut(s)	683, 1276, 1404, 1528, 1904, 1990, 2184, 2238
DpnII	GATC	8 cut(s)	681, 1274, 1402, 1526, 1902, 1988, 2182, 2236
EaeI	YGGCCR	2 cut(s)	91, 173
Eam1104I	CTCTTC	2 cut(s)	134, 805
EarI	CTCTTC	2 cut(s)	134, 805
EciI	GGCGGA	4 cut(s)	531, 632, 2082, 2257
Eco105I	TACGTA	1 cut(s)	871
Eco130I	CCWWGG	4 cut(s)	274, 612, 1563, 1881
Eco147I	AGGCCT	1 cut(s)	324
Eco31I	GGTCTC	4 cut(s)	44, 102, 1939, 2037
Eco32I	GATATC	1 cut(s)	2058
Eco47I	GGWCC	3 cut(s)	347, 518, 584
Eco57I	CTGAAG	1 cut(s)	837
EcoO109I	RGGNCCY	2 cut(s)	584, 622
EcoRII	CCWGG	3 cut(s)	45, 641, 1725
EcoRV	GATATC	1 cut(s)	2058
EcoT14I	CCWWGG	4 cut(s)	274, 612, 1563, 1881
EcoT22I	ATGCAT	2 cut(s)	691, 1717
ErhI	CCWWGG	4 cut(s)	274, 612, 1563, 1881
FalI	AAGNNNNNCTT	6 cut(s)	113, 145, 901, 933, 942, 974
FaqI	GGGAC	2 cut(s)	597, 1969
FauNDI	CATATG	1 cut(s)	1711
FbaI	TGATCA	1 cut(s)	681
FblI	GTMKAC	4 cut(s)	477, 973, 1098, 1380
Fnu4HI	GCNGC	7 cut(s)	67, 70, 567, 606, 1017, 1125, 2128
FokI	GGATG	2 cut(s)	595, 712
Fsp4HI	GCNGC	7 cut(s)	67, 70, 567, 606, 1017, 1125, 2128
FspBI	CTAG	4 cut(s)	936, 1652, 2283, 2328
GlaI	GCGC	1 cut(s)	676
GluI	GCNGC	7 cut(s)	67, 70, 567, 606, 1017, 1125, 2128
GsuI	CTGGAG	4 cut(s)	68, 1071, 1662, 2061
HaeII	RGCGCY	1 cut(s)	678
HaeIII	GGCC	5 cut(s)	93, 175, 324, 624, 726
HapII	CCGG	9 cut(s)	63, 94, 135, 407, 421, 672, 1634, 2048, 2110
HhaI	GCGC	1 cut(s)	677
Hin6I	GCGC	1 cut(s)	675
HinP1I	GCGC	1 cut(s)	675
HinfI	GANTC	9 cut(s)	124, 994, 1301, 1445, 1460, 1637, 1957, 2148, 2332
HpaII	CCGG	9 cut(s)	63, 94, 135, 407, 421, 672, 1634, 2048, 2110
HphI	GGTGA	7 cut(s)	803, 1127, 1147, 1296, 1904, 2135, 2327
Hpy99I	CGWCG	2 cut(s)	113, 2279
HpyAV	CCTTC	7 cut(s)	194, 251, 361, 635, 1948, 1971, 2141
HpyCH4III	ACNGT	7 cut(s)	113, 264, 438, 501, 1063, 1162, 1223
HpyCH4IV	ACGT	6 cut(s)	83, 228, 283, 870, 1473, 2277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	614, 674, 2207
HpyF3I	CTNAG	9 cut(s)	165, 338, 806, 1308, 1361, 1544, 1613, 2150, 2322
HpySE526I	ACGT	6 cut(s)	83, 228, 283, 870, 1473, 2277
HspAI	GCGC	1 cut(s)	675
KpnI	GGTACC	1 cut(s)	1978
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
Ksp22I	TGATCA	1 cut(s)	681
Kzo9I	GATC	8 cut(s)	681, 1274, 1402, 1526, 1902, 1988, 2182, 2236
LguI	GCTCTTC	1 cut(s)	805
LmnI	GCTCC	5 cut(s)	673, 958, 1643, 2215, 2301
Lsp1109I	GCAGC	5 cut(s)	81, 592, 1003, 1111, 2139
LweI	GCATC	4 cut(s)	617, 655, 1144, 1828
MabI	ACCWGGT	1 cut(s)	1725
MaeI	CTAG	4 cut(s)	936, 1652, 2283, 2328
MaeII	ACGT	6 cut(s)	83, 228, 283, 870, 1473, 2277
MaeIII	GTNAC	4 cut(s)	79, 284, 531, 928
MalI	GATC	8 cut(s)	683, 1276, 1404, 1528, 1904, 1990, 2184, 2238
MboI	GATC	8 cut(s)	681, 1274, 1402, 1526, 1902, 1988, 2182, 2236
MfeI	CAATTG	1 cut(s)	1187
MflI	RGATCY	3 cut(s)	1526, 2182, 2236
MhlI	GDGCHC	1 cut(s)	642
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	9 cut(s)	342, 750, 901, 1069, 1079, 1166, 1187, 1203, 1312
MluNI	TGGCCA	1 cut(s)	175
MlyI	GAGTC	5 cut(s)	1003, 1439, 1631, 1951, 2142
MmeI	TCCRAC	1 cut(s)	1606
Mox20I	TGGCCA	1 cut(s)	175
Mph1103I	ATGCAT	2 cut(s)	691, 1717
MreI	CGCCGGCG	1 cut(s)	62
MroNI	GCCGGC	1 cut(s)	62
MroXI	GAANNNNTTC	2 cut(s)	916, 1335
MscI	TGGCCA	1 cut(s)	175
MseI	TTAA	5 cut(s)	395, 1469, 1793, 1998, 2052
MslI	CAYNNNNRTG	3 cut(s)	1714, 1816, 1969
Msp20I	TGGCCA	1 cut(s)	175
MspCI	CTTAAG	1 cut(s)	1997
MspI	CCGG	9 cut(s)	63, 94, 135, 407, 421, 672, 1634, 2048, 2110
MspR9I	CCNGG	6 cut(s)	47, 408, 643, 672, 1727, 2048
MunI	CAATTG	1 cut(s)	1187
Mva1269I	GAATGC	1 cut(s)	1498
MvaI	CCWGG	3 cut(s)	47, 643, 1727
MvnI	CGCG	2 cut(s)	1485, 2205
MwoI	GCNNNNNNNGC	3 cut(s)	614, 674, 2207
NaeI	GCCGGC	1 cut(s)	64
NciI	CCSGG	3 cut(s)	408, 672, 2048
NcoI	CCATGG	3 cut(s)	274, 612, 1881
NdeI	CATATG	1 cut(s)	1711
NdeII	GATC	8 cut(s)	681, 1274, 1402, 1526, 1902, 1988, 2182, 2236
NgoMIV	GCCGGC	1 cut(s)	62
NlaIV	GGNNCC	8 cut(s)	139, 239, 349, 585, 898, 984, 1879, 1976
NmeAIII	GCCGAG	1 cut(s)	2286
NmuCI	GTSAC	4 cut(s)	79, 284, 531, 928
NsiI	ATGCAT	2 cut(s)	691, 1717
NspI	RCATGY	4 cut(s)	693, 886, 1016, 1268
PaeI	GCATGC	1 cut(s)	1016
PagI	TCATGA	2 cut(s)	244, 574
PasI	CCCWGGG	1 cut(s)	642
PceI	AGGCCT	1 cut(s)	324
PciI	ACATGT	1 cut(s)	882
PciSI	GCTCTTC	1 cut(s)	805
PcsI	WCGNNNNNNNCGW	1 cut(s)	2283
PctI	GAATGC	1 cut(s)	1498
PdiI	GCCGGC	1 cut(s)	64
PdmI	GAANNNNTTC	2 cut(s)	916, 1335
PfeI	GAWTC	4 cut(s)	124, 1301, 1460, 2332
Pfl23II	CGTACG	1 cut(s)	84
PflMI	CCANNNNNTGG	1 cut(s)	559
PkrI	GCNGC	7 cut(s)	68, 71, 568, 607, 1018, 1126, 2129
PleI	GAGTC	5 cut(s)	1002, 1439, 1631, 1951, 2142
PpsI	GAGTC	5 cut(s)	1002, 1439, 1631, 1951, 2142
Ppu21I	YACGTR	3 cut(s)	84, 229, 871
PpuMI	RGGWCCY	1 cut(s)	584
PscI	ACATGT	1 cut(s)	882
PsiI	TTATAA	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	3 cut(s)	45, 641, 1725
PspGI	CCWGG	3 cut(s)	45, 641, 1725
PspLI	CGTACG	1 cut(s)	84
PspN4I	GGNNCC	8 cut(s)	139, 239, 349, 585, 898, 984, 1879, 1976
PspPI	GGNCC	5 cut(s)	347, 518, 584, 622, 725
PspPPI	RGGWCCY	1 cut(s)	584
PstI	CTGCAG	1 cut(s)	1021
PsuI	RGATCY	3 cut(s)	1526, 2182, 2236
RseI	CAYNNNNRTG	3 cut(s)	1714, 1816, 1969
Rsr2I	CGGWCCG	1 cut(s)	518
RsrII	CGGWCCG	1 cut(s)	518
SapI	GCTCTTC	1 cut(s)	805
SaqAI	TTAA	5 cut(s)	395, 1469, 1793, 1998, 2052
SatI	GCNGC	7 cut(s)	67, 70, 567, 606, 1017, 1125, 2128
Sau3AI	GATC	8 cut(s)	681, 1274, 1402, 1526, 1902, 1988, 2182, 2236
Sau96I	GGNCC	5 cut(s)	347, 518, 584, 622, 725
ScaI	AGTACT	2 cut(s)	1518, 1542
SchI	GAGTC	5 cut(s)	1003, 1439, 1631, 1951, 2142
ScrFI	CCNGG	6 cut(s)	47, 408, 643, 672, 1727, 2048
SduI	GDGCHC	1 cut(s)	642
SexAI	ACCWGGT	1 cut(s)	1725
SfaNI	GCATC	4 cut(s)	617, 655, 1144, 1828
SfcI	CTRYAG	1 cut(s)	1017
SgrAI	CRCCGGYG	1 cut(s)	62
SinI	GGWCC	3 cut(s)	347, 518, 584
SmiMI	CAYNNNNRTG	3 cut(s)	1714, 1816, 1969
SmlI	CTYRAG	2 cut(s)	1001, 1997
SmoI	CTYRAG	2 cut(s)	1001, 1997
SnaBI	TACGTA	1 cut(s)	871
SpeI	ACTAGT	1 cut(s)	935
SphI	GCATGC	1 cut(s)	1016
Sse9I	AATT	9 cut(s)	342, 750, 901, 1069, 1079, 1166, 1187, 1203, 1312
SseBI	AGGCCT	1 cut(s)	324
SsiI	CCGC	7 cut(s)	66, 516, 566, 617, 1485, 2093, 2268
SspMI	CTAG	4 cut(s)	936, 1652, 2283, 2328
StuI	AGGCCT	1 cut(s)	324
StyD4I	CCNGG	6 cut(s)	45, 406, 641, 670, 1725, 2046
StyI	CCWWGG	4 cut(s)	274, 612, 1563, 1881
TaaI	ACNGT	7 cut(s)	113, 264, 438, 501, 1063, 1162, 1223
TaiI	ACGT	6 cut(s)	86, 231, 286, 873, 1476, 2280
TaqI	TCGA	5 cut(s)	108, 1924, 1987, 2178, 2274
TaqII	GACCGA	1 cut(s)	535
TasI	AATT	9 cut(s)	342, 750, 901, 1069, 1079, 1166, 1187, 1203, 1312
TatI	WGTACW	3 cut(s)	1323, 1516, 1540
TauI	GCSGC	2 cut(s)	69, 569
TfiI	GAWTC	4 cut(s)	124, 1301, 1460, 2332
Tru1I	TTAA	5 cut(s)	395, 1469, 1793, 1998, 2052
Tru9I	TTAA	5 cut(s)	395, 1469, 1793, 1998, 2052
TscAI	CASTG	5 cut(s)	1026, 1165, 1249, 1818, 2223
TseFI	GTSAC	4 cut(s)	79, 284, 531, 928
TseI	GCWGC	5 cut(s)	69, 605, 1016, 1124, 2127
Tsp45I	GTSAC	4 cut(s)	79, 284, 531, 928
TspGWI	ACGGA	1 cut(s)	1527
TspRI	CASTG	5 cut(s)	1026, 1165, 1249, 1818, 2223
Van91I	CCANNNNNTGG	1 cut(s)	559
Vha464I	CTTAAG	1 cut(s)	1997
VpaK11BI	GGWCC	3 cut(s)	347, 518, 584
XbaI	TCTAGA	1 cut(s)	1651
XceI	RCATGY	4 cut(s)	693, 886, 1016, 1268
XmiI	GTMKAC	4 cut(s)	477, 973, 1098, 1380
XmnI	GAANNNNTTC	2 cut(s)	916, 1335
XspI	CTAG	4 cut(s)	936, 1652, 2283, 2328
ZrmI	AGTACT	2 cut(s)	1518, 1542
Zsp2I	ATGCAT	2 cut(s)	691, 1717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.