Rmu_sc0012554.1_g000001

beta-galactosidase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012554.1
Physical Location & Seq
Reverse (-)
1771 .. 4723
2953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012554.1_g000001.1.cds

Sequence Viewer

Length: 1509 bp
atgaaatcaaatggactgtacgcttcacaaggcggaccgattatattgtcacagattgagaacgagtaccaaaatgtggaagcggcgtttcatgaaaagggacctccttatgttctttgggctgcatccatggcggagggccttcaaactggtgtgccctgggttatgtgcaagcaaaatgatgctcccggcgctgtgatcaatgcatgcaatgggttgaggtgtggagaaacctttgctggcccaaatgcccctaataagccagcaatttggacagaggactggacaagccaataccttgtatatggtgaagaaccatacctcagaagagctgaagatattgcatttcatgttgcactctttattgcaaagaataaaggaagctatgtaaactactacatgtatcatggaggaaccaattttggaagaacaacttccgagtttgtgactacaagttattacgatgaagctcctcttgatgagtatggtataccaaaggaaccaaaatggagtcatctcaaggagttgcatgctgcagtgaagttgtccatcagtcctctacttgctggagaacaaaccgtcgtcaatttgggtcaatttcaaacagcctatgtctacaaagctcaatctggtgaatgtgctgctttcttggtgaacaatggctctaaagatgccgctgtccaatttcagaactctccttatcaattgtctccaaagtcaattagtatcttaccagactgtaaaaatgtgactttcaacactggaaaggtaagcgcacaacaagcaacaagatcatggacaccagctcaaaagtttgattcacctcagaattggcaagagtacaaagaagccattcccacttatgatgacacctctctaagagagaacataatagtagaccaaatgagaactacaaatgatcgttctgattatctgtggtacactttcagctttcagcatgactctcctaatccagaatccacattaaacgtgcaaacacgcggacatatcctgcattcattcgtaaacggagtacttgtaggatctggacatggagtgctcaggaatacaggtttttccttggagaataagattactctgaataaggggataaaccatgtctccctgctaagtgcaatggttggactgccggactctggagcatatctagagcgtagagattatggattacagagtgtgaagattaacgataaagatttcggcaaatatgcatggggataccagactttatttgatgcaccagcagggaatgaccctgttgcattatatcttggttccatgggaaagggtgaagtttggatcaatggtcaaagcattggtcgatattgggtctccttccacaccccaaaaggggctccttcacagacatggtaccatgtacctcgatcttttcttaagcctactggaaacttgttagttctcattgaagaagaaactggagacccggttaagatatctctggacaaagtaaattatagttttcaatga

Protein Analysis

502

Amino Acids

55.84

Weight (kDa)

5.87

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1392
AccB1I GGYRCC 1 cut(s) 1392
AccB7I CCANNNNNTGG 1 cut(s) 76
AccI GTMKAC 3 cut(s) 490, 615, 897
AccII CGCG 1 cut(s) 1002
AciI CCGC 5 cut(s) 33, 83, 134, 675, 1002
AclWI GGATC 2 cut(s) 1051, 1328
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 7 cut(s) 20, 68, 842, 941, 1035, 1394, 1401
AfiI CCNNNNNNNGG 4 cut(s) 76, 1157, 1371, 1372
AflII CTTAAG 1 cut(s) 1415
AflIII ACRYGT 1 cut(s) 399
AgsI TTSAA 5 cut(s) 146, 602, 757, 1448, 1505
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 6 cut(s) 332, 384, 470, 623, 806, 951
AluI AGCT 6 cut(s) 332, 384, 470, 623, 806, 951
Alw21I GWGCWC 1 cut(s) 1062
Alw26I GTCTC 4 cut(s) 714, 1126, 1357, 1455
AlwI GGATC 2 cut(s) 1051, 1328
AoxI GGCC 2 cut(s) 139, 241
ApeKI GCWGC 3 cut(s) 122, 533, 641
ArsI GACNNNNNNTTYG 2 cut(s) 1324, 1356
Asp700I GAANNNNTTC 2 cut(s) 433, 852
Asp718I GGTACC 1 cut(s) 1392
AspLEI GCGC 2 cut(s) 194, 776
AspS9I GGNCC 4 cut(s) 35, 101, 139, 242
AsuC2I CCSGG 2 cut(s) 189, 1466
AsuHPI GGTGA 5 cut(s) 320, 644, 664, 813, 1322
AvaII GGWCC 2 cut(s) 35, 101
BaeGI GKGCMC 1 cut(s) 159
BanI GGYRCC 1 cut(s) 1392
BanII GRGCYC 1 cut(s) 1378
Bbv12I GWGCWC 1 cut(s) 1062
BbvI GCAGC 3 cut(s) 109, 520, 628
BccI CCATC 1 cut(s) 557
BciT130I CCWGG 1 cut(s) 160
BciVI GTATCC 1 cut(s) 1232
BclI TGATCA 1 cut(s) 198
BcnI CCSGG 2 cut(s) 189, 1466
BcoDI GTCTC 4 cut(s) 714, 1126, 1357, 1455
BfaI CTAG 1 cut(s) 1169
BfmI CTRYAG 1 cut(s) 534
BfoI RGCGCY 1 cut(s) 195
BfrI CTTAAG 1 cut(s) 1415
BfuI GTATCC 1 cut(s) 1232
BisI GCNGC 5 cut(s) 84, 123, 534, 642, 675
BlsI GCNGC 5 cut(s) 85, 124, 535, 643, 676
BmcAI AGTACT 1 cut(s) 1035
Bme1390I CCNGG 3 cut(s) 160, 189, 1466
Bme18I GGWCC 2 cut(s) 35, 101
BmgT120I GGNCC 4 cut(s) 35, 101, 139, 242
BmiI GGNNCC 6 cut(s) 102, 415, 501, 1297, 1377, 1394
BmrFI CCNGG 3 cut(s) 160, 189, 1466
BmsI GCATC 4 cut(s) 134, 172, 661, 1246
BpmI CTGGAG 3 cut(s) 588, 1179, 1479
Bpu10I CCTNAGC 1 cut(s) 1061
BpuEI CTTGAG 1 cut(s) 503
BpuMI CCSGG 2 cut(s) 189, 1466
BsaI GGTCTC 2 cut(s) 1357, 1455
BsaJI CCNNGG 5 cut(s) 129, 158, 159, 1080, 1299
BsaXI ACNNNNNCTCC 6 cut(s) 1023, 1053, 1106, 1136, 1452, 1482
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 1157, 1371, 1372
Bse1I ACTGG 5 cut(s) 154, 287, 766, 1429, 1462
Bse3DI GCAATG 2 cut(s) 217, 1143
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 5 cut(s) 129, 158, 159, 1080, 1299
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 4 cut(s) 76, 1157, 1371, 1372
BseMI GCAATG 2 cut(s) 217, 1143
BseMII CTCAG 3 cut(s) 337, 839, 1075
BseNI ACTGG 5 cut(s) 154, 287, 766, 1429, 1462
BseRI GAGGAG 1 cut(s) 462
BseSI GKGCMC 1 cut(s) 159
BseXI GCAGC 3 cut(s) 109, 520, 628
Bsh1236I CGCG 1 cut(s) 1002
BshFI GGCC 2 cut(s) 141, 243
BshNI GGYRCC 1 cut(s) 1392
BsiHKAI GWGCWC 1 cut(s) 1062
BsiSI CCGG 3 cut(s) 189, 1151, 1466
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 4 cut(s) 76, 1157, 1371, 1372
BsmAI GTCTC 4 cut(s) 714, 1126, 1357, 1455
BsmFI GGGAC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 1015
BsnI GGCC 2 cut(s) 141, 243
Bso31I GGTCTC 2 cut(s) 1357, 1455
Bsp1286I GDGCHC 3 cut(s) 159, 1062, 1378
Bsp143I GATC 6 cut(s) 198, 791, 919, 1043, 1320, 1406
Bsp19I CCATGG 2 cut(s) 129, 1299
BspACI CCGC 5 cut(s) 33, 83, 134, 675, 1002
BspANI GGCC 2 cut(s) 141, 243
BspCNI CTCAG 3 cut(s) 336, 838, 1074
BspFNI CGCG 1 cut(s) 1002
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 6 cut(s) 102, 415, 501, 1297, 1377, 1394
BspMAI CTGCAG 1 cut(s) 538
BspPI GGATC 2 cut(s) 1051, 1328
BspQI GCTCTTC 1 cut(s) 322
BspT107I GGYRCC 1 cut(s) 1392
BspTI CTTAAG 1 cut(s) 1415
BspTNI GGTCTC 2 cut(s) 1357, 1455
BsrDI GCAATG 2 cut(s) 217, 1143
BsrI ACTGG 5 cut(s) 154, 287, 766, 1429, 1462
BssECI CCNNGG 5 cut(s) 129, 158, 159, 1080, 1299
BssMI GATC 6 cut(s) 198, 791, 919, 1043, 1320, 1406
BssNAI GTATAC 1 cut(s) 491
BssT1I CCWWGG 3 cut(s) 129, 1080, 1299
Bst1107I GTATAC 1 cut(s) 491
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 3 cut(s) 18, 580, 740
Bst6I CTCTTC 1 cut(s) 322
BstAFI CTTAAG 1 cut(s) 1415
BstC8I GCNNGC 5 cut(s) 173, 208, 241, 264, 531
BstDEI CTNAG 5 cut(s) 323, 825, 878, 1061, 1130
BstDSI CCRYGG 2 cut(s) 129, 1299
BstF5I GGATG 1 cut(s) 125
BstFNI CGCG 1 cut(s) 1002
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 2 cut(s) 194, 776
BstKTI GATC 6 cut(s) 201, 794, 922, 1046, 1323, 1409
BstMAI GTCTC 4 cut(s) 714, 1126, 1357, 1455
BstMBI GATC 6 cut(s) 198, 791, 919, 1043, 1320, 1406
BstMWI GCNNNNNNNGC 3 cut(s) 131, 191, 782
BstNI CCWGG 1 cut(s) 160
BstNSI RCATGY 3 cut(s) 210, 403, 533
BstSCI CCNGG 3 cut(s) 158, 187, 1464
BstSFI CTRYAG 1 cut(s) 534
BstSLI GKGCMC 1 cut(s) 159
BstUI CGCG 1 cut(s) 1002
BstV1I GCAGC 3 cut(s) 109, 520, 628
BstX2I RGATCY 1 cut(s) 1043
BstXI CCANNNNNNTGG 1 cut(s) 270
BstYI RGATCY 1 cut(s) 1043
BstZ17I GTATAC 1 cut(s) 491
BsuI GTATCC 1 cut(s) 1232
BsuRI GGCC 2 cut(s) 141, 243
BtgI CCRYGG 2 cut(s) 129, 1299
BtsCI GGATG 1 cut(s) 125
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 2 cut(s) 543, 759
Cac8I GCNNGC 5 cut(s) 173, 208, 241, 264, 531
CciI TCATGA 1 cut(s) 91
CfoI GCGC 2 cut(s) 194, 776
Cfr13I GGNCC 4 cut(s) 35, 101, 139, 242
CpoI CGGWCCG 1 cut(s) 35
Csp6I GTAC 7 cut(s) 19, 67, 841, 940, 1034, 1393, 1400
CspI CGGWCCG 1 cut(s) 35
CviQI GTAC 7 cut(s) 19, 67, 841, 940, 1034, 1393, 1400
DdeI CTNAG 5 cut(s) 323, 825, 878, 1061, 1130
DpnI GATC 6 cut(s) 200, 793, 921, 1045, 1322, 1408
DpnII GATC 6 cut(s) 198, 791, 919, 1043, 1320, 1406
Eam1104I CTCTTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 322
EciI GGCGGA 2 cut(s) 48, 149
Eco130I CCWWGG 3 cut(s) 129, 1080, 1299
Eco24I GRGCYC 1 cut(s) 1378
Eco31I GGTCTC 2 cut(s) 1357, 1455
Eco32I GATATC 1 cut(s) 1476
Eco47I GGWCC 2 cut(s) 35, 101
Eco57I CTGAAG 1 cut(s) 354
EcoO109I RGGNCCY 2 cut(s) 101, 139
EcoRII CCWGG 1 cut(s) 158
EcoRV GATATC 1 cut(s) 1476
EcoT14I CCWWGG 3 cut(s) 129, 1080, 1299
EcoT22I ATGCAT 2 cut(s) 208, 1234
EcoT38I GRGCYC 1 cut(s) 1378
ErhI CCWWGG 3 cut(s) 129, 1080, 1299
FalI AAGNNNNNCTT 4 cut(s) 418, 450, 459, 491
FaqI GGGAC 1 cut(s) 114
FbaI TGATCA 1 cut(s) 198
FblI GTMKAC 3 cut(s) 490, 615, 897
Fnu4HI GCNGC 5 cut(s) 84, 123, 534, 642, 675
FokI GGATG 1 cut(s) 112
FriOI GRGCYC 1 cut(s) 1378
Fsp4HI GCNGC 5 cut(s) 84, 123, 534, 642, 675
FspBI CTAG 1 cut(s) 1169
GlaI GCGC 2 cut(s) 193, 775
GluI GCNGC 5 cut(s) 84, 123, 534, 642, 675
GsuI CTGGAG 3 cut(s) 588, 1179, 1479
HaeII RGCGCY 1 cut(s) 195
HaeIII GGCC 2 cut(s) 141, 243
HapII CCGG 3 cut(s) 189, 1151, 1466
HhaI GCGC 2 cut(s) 194, 776
Hin6I GCGC 2 cut(s) 192, 774
HinP1I GCGC 2 cut(s) 192, 774
HinfI GANTC 5 cut(s) 511, 818, 962, 977, 1154
HpaII CCGG 3 cut(s) 189, 1151, 1466
HphI GGTGA 5 cut(s) 320, 644, 664, 813, 1322
Hpy166II GTNNAC 7 cut(s) 391, 491, 616, 655, 898, 942, 1027
Hpy188I TCNGA 6 cut(s) 326, 439, 690, 828, 928, 1101
Hpy188III TCNNGA 8 cut(s) 92, 476, 974, 1047, 1063, 1158, 1169, 1481
Hpy8I GTNNAC 7 cut(s) 391, 491, 616, 655, 898, 942, 1027
Hpy99I CGWCG 1 cut(s) 584
HpyAV CCTTC 3 cut(s) 152, 1366, 1389
HpyCH4III ACNGT 3 cut(s) 18, 580, 740
HpyCH4IV ACGT 1 cut(s) 990
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 191, 782
HpyF3I CTNAG 5 cut(s) 323, 825, 878, 1061, 1130
HpySE526I ACGT 1 cut(s) 990
HspAI GCGC 2 cut(s) 192, 774
KpnI GGTACC 1 cut(s) 1396
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 6 cut(s) 198, 791, 919, 1043, 1320, 1406
LguI GCTCTTC 1 cut(s) 322
LmnI GCTCC 4 cut(s) 190, 475, 1160, 1381
Lsp1109I GCAGC 3 cut(s) 109, 520, 628
LweI GCATC 4 cut(s) 134, 172, 661, 1246
MaeI CTAG 1 cut(s) 1169
MaeII ACGT 1 cut(s) 990
MaeIII GTNAC 3 cut(s) 48, 445, 748
MalI GATC 6 cut(s) 200, 793, 921, 1045, 1322, 1408
MboI GATC 6 cut(s) 198, 791, 919, 1043, 1320, 1406
MboII GAAGA 7 cut(s) 323, 339, 347, 438, 1213, 1460, 1463
MfeI CAATTG 1 cut(s) 704
MflI RGATCY 1 cut(s) 1043
MhlI GDGCHC 3 cut(s) 159, 1062, 1378
MluCI AATT 9 cut(s) 267, 418, 586, 596, 683, 704, 720, 829, 1492
MlyI GAGTC 3 cut(s) 520, 956, 1148
MmeI TCCRAC 1 cut(s) 1123
Mph1103I ATGCAT 2 cut(s) 208, 1234
MroXI GAANNNNTTC 2 cut(s) 433, 852
MseI TTAA 4 cut(s) 986, 1206, 1416, 1470
MslI CAYNNNNRTG 1 cut(s) 1387
MspA1I CMGCKG 1 cut(s) 677
MspCI CTTAAG 1 cut(s) 1415
MspI CCGG 3 cut(s) 189, 1151, 1466
MspR9I CCNGG 3 cut(s) 160, 189, 1466
MunI CAATTG 1 cut(s) 704
Mva1269I GAATGC 1 cut(s) 1015
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 1 cut(s) 1002
MwoI GCNNNNNNNGC 3 cut(s) 131, 191, 782
NciI CCSGG 2 cut(s) 189, 1466
NcoI CCATGG 2 cut(s) 129, 1299
NdeII GATC 6 cut(s) 198, 791, 919, 1043, 1320, 1406
NlaIV GGNNCC 6 cut(s) 102, 415, 501, 1297, 1377, 1394
NmuCI GTSAC 3 cut(s) 48, 445, 748
NsiI ATGCAT 2 cut(s) 208, 1234
NspI RCATGY 3 cut(s) 210, 403, 533
PaeI GCATGC 2 cut(s) 210, 533
PagI TCATGA 1 cut(s) 91
PasI CCCWGGG 1 cut(s) 159
PciI ACATGT 1 cut(s) 399
PciSI GCTCTTC 1 cut(s) 322
PctI GAATGC 1 cut(s) 1015
PdmI GAANNNNTTC 2 cut(s) 433, 852
PfeI GAWTC 2 cut(s) 818, 977
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 5 cut(s) 85, 124, 535, 643, 676
PleI GAGTC 3 cut(s) 519, 956, 1148
PpsI GAGTC 3 cut(s) 519, 956, 1148
PpuMI RGGWCCY 1 cut(s) 101
PscI ACATGT 1 cut(s) 399
Psp5II RGGWCCY 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 6 cut(s) 102, 415, 501, 1297, 1377, 1394
PspPI GGNCC 4 cut(s) 35, 101, 139, 242
PspPPI RGGWCCY 1 cut(s) 101
PstI CTGCAG 1 cut(s) 538
PsuI RGATCY 1 cut(s) 1043
RsaI GTAC 7 cut(s) 20, 68, 842, 941, 1035, 1394, 1401
RsaNI GTAC 7 cut(s) 19, 67, 841, 940, 1034, 1393, 1400
RseI CAYNNNNRTG 1 cut(s) 1387
Rsr2I CGGWCCG 1 cut(s) 35
RsrII CGGWCCG 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 322
SaqAI TTAA 4 cut(s) 986, 1206, 1416, 1470
SatI GCNGC 5 cut(s) 84, 123, 534, 642, 675
Sau3AI GATC 6 cut(s) 198, 791, 919, 1043, 1320, 1406
Sau96I GGNCC 4 cut(s) 35, 101, 139, 242
ScaI AGTACT 1 cut(s) 1035
SchI GAGTC 3 cut(s) 520, 956, 1148
ScrFI CCNGG 3 cut(s) 160, 189, 1466
SduI GDGCHC 3 cut(s) 159, 1062, 1378
SfaNI GCATC 4 cut(s) 134, 172, 661, 1246
SfcI CTRYAG 1 cut(s) 534
SinI GGWCC 2 cut(s) 35, 101
SmiMI CAYNNNNRTG 1 cut(s) 1387
SmlI CTYRAG 2 cut(s) 518, 1415
SmoI CTYRAG 2 cut(s) 518, 1415
SphI GCATGC 2 cut(s) 210, 533
Sse9I AATT 9 cut(s) 267, 418, 586, 596, 683, 704, 720, 829, 1492
SsiI CCGC 5 cut(s) 33, 83, 134, 675, 1002
SspMI CTAG 1 cut(s) 1169
StyD4I CCNGG 3 cut(s) 158, 187, 1464
StyI CCWWGG 3 cut(s) 129, 1080, 1299
TaaI ACNGT 3 cut(s) 18, 580, 740
TaiI ACGT 1 cut(s) 993
TaqI TCGA 2 cut(s) 1342, 1405
TaqII GACCGA 1 cut(s) 52
TasI AATT 9 cut(s) 267, 418, 586, 596, 683, 704, 720, 829, 1492
TatI WGTACW 2 cut(s) 840, 1033
TauI GCSGC 2 cut(s) 86, 677
TfiI GAWTC 2 cut(s) 818, 977
Tru1I TTAA 4 cut(s) 986, 1206, 1416, 1470
Tru9I TTAA 4 cut(s) 986, 1206, 1416, 1470
TscAI CASTG 2 cut(s) 543, 766
TseFI GTSAC 3 cut(s) 48, 445, 748
TseI GCWGC 3 cut(s) 122, 533, 641
Tsp45I GTSAC 3 cut(s) 48, 445, 748
TspDTI ATGAA 6 cut(s) 17, 80, 108, 338, 480, 1008
TspGWI ACGGA 1 cut(s) 1044
TspRI CASTG 2 cut(s) 543, 766
Van91I CCANNNNNTGG 1 cut(s) 76
Vha464I CTTAAG 1 cut(s) 1415
VpaK11BI GGWCC 2 cut(s) 35, 101
XbaI TCTAGA 1 cut(s) 1168
XceI RCATGY 3 cut(s) 210, 403, 533
XmiI GTMKAC 3 cut(s) 490, 615, 897
XmnI GAANNNNTTC 2 cut(s) 433, 852
XspI CTAG 1 cut(s) 1169
ZrmI AGTACT 1 cut(s) 1035
Zsp2I ATGCAT 2 cut(s) 208, 1234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.