RLG00000012775

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018659
Physical Location & Seq
Reverse (-)
22238200 .. 22239432
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012775

Sequence Viewer

Length: 540 bp
ATGGAGGAGGCGACGTGGCTCATACTAGCAAGGAAGATTGAATCTGACGATGCAAGTCGGGTTCGACCACAAAGAGGAAGGCTTAAGGACAATGAAGATTGGCCAAAAAGGATCAATTTTCAGGTAAAGATTGGACCAAGCTGGATGCGGGTGGCGGCGACACAGGCAGTGGGAGAGGCACCTTTCATATGCCCAGAACAAAGTGGCGAGGGATGTCCTGCTCCAATTGGCAAGGGGCAGTGCGAGGCTATGCACTTTGAGGTGTGGTGGTTAATGCATGTGAGCACTGATTTGCTGGGGCAATGGCGGAGCTCGGTTTATTTGGAAACGGCAGCCGATAACGCAGGGCGTAGGGAGATGGAGGGCGGCGAGTTTCTCTGTCGTCGTCTTCTTAAAAACTTTCAAGTTGAGGATGATGGCGTTTGGTACCGATCTAACAATATCAGGGTTGGGTGGACGTCCGGCGTCGACGTTGTCGAACGGGGGGCTGCTGATCTTAAGGCTGGCGGAGCGAGTTGGATGGGCTTGGCCACCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.08

Weight (kDa)

5.51

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018659)

Species Orthologous Gene IDs
rosa_laevigata RLG00000012775 RLG00000012778
rosa_multiflora Rmu_sc0003743.1_g000020
rosa_rugosa Rorug06G0159900 Rorug06G0159900
rosa_samantha Rh1AG019900 Rh1BG015100 Rh1CG017700 Rh1CG017800 Rh1DG015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 461
Acc65I GGTACC 1 cut(s) 426
AccB1I GGYRCC 2 cut(s) 178, 426
AccI GTMKAC 1 cut(s) 468
AciI CCGC 5 cut(s) 148, 155, 307, 366, 507
AclWI GGATC 1 cut(s) 119
AcoI YGGCCR 2 cut(s) 101, 528
AcyI GRCGYC 2 cut(s) 458, 465
AfaI GTAC 1 cut(s) 428
AfiI CCNNNNNNNGG 1 cut(s) 74
AflII CTTAAG 2 cut(s) 83, 497
AgsI TTSAA 2 cut(s) 41, 404
AjiI CACGTC 1 cut(s) 15
AluBI AGCT 2 cut(s) 141, 312
AluI AGCT 2 cut(s) 141, 312
Alw21I GWGCWC 2 cut(s) 287, 314
AlwI GGATC 1 cut(s) 119
AoxI GGCC 2 cut(s) 101, 528
ApeKI GCWGC 2 cut(s) 332, 488
Asp718I GGTACC 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 134
AvaII GGWCC 1 cut(s) 134
BalI TGGCCA 2 cut(s) 103, 530
BanI GGYRCC 2 cut(s) 178, 426
BanII GRGCYC 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 380
Bbv12I GWGCWC 2 cut(s) 287, 314
BbvI GCAGC 2 cut(s) 344, 475
BccI CCATC 3 cut(s) 352, 410, 514
BceAI ACGGC 1 cut(s) 345
BfaI CTAG 1 cut(s) 26
BfrI CTTAAG 2 cut(s) 83, 497
BisI GCNGC 4 cut(s) 156, 333, 367, 489
BlsI GCNGC 4 cut(s) 157, 334, 368, 490
Bme18I GGWCC 1 cut(s) 134
BmgBI CACGTC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 2 cut(s) 180, 428
BmsI GCATC 2 cut(s) 40, 135
BpiI GAAGAC 1 cut(s) 380
BsaHI GRCGYC 2 cut(s) 458, 465
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse3DI GCAATG 1 cut(s) 308
BseGI GGATG 4 cut(s) 150, 218, 418, 525
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 1 cut(s) 308
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 344, 475
BseYI CCCAGC 1 cut(s) 295
BshFI GGCC 2 cut(s) 103, 530
BshNI GGYRCC 2 cut(s) 178, 426
BsiHKAI GWGCWC 2 cut(s) 287, 314
BsiSI CCGG 1 cut(s) 462
BslI CCNNNNNNNGG 1 cut(s) 74
BsnI GGCC 2 cut(s) 103, 530
Bsp1286I GDGCHC 2 cut(s) 287, 314
Bsp143I GATC 3 cut(s) 111, 431, 493
BspACI CCGC 5 cut(s) 148, 155, 307, 366, 507
BspANI GGCC 2 cut(s) 103, 530
BspLI GGNNCC 2 cut(s) 180, 428
BspPI GGATC 1 cut(s) 119
BspT107I GGYRCC 2 cut(s) 178, 426
BspTI CTTAAG 2 cut(s) 83, 497
BsrDI GCAATG 1 cut(s) 308
BssMI GATC 3 cut(s) 111, 431, 493
BssNI GRCGYC 2 cut(s) 458, 465
BstACI GRCGYC 2 cut(s) 458, 465
BstAFI CTTAAG 2 cut(s) 83, 497
BstC8I GCNNGC 1 cut(s) 505
BstF5I GGATG 4 cut(s) 150, 218, 418, 525
BstKTI GATC 3 cut(s) 114, 434, 496
BstMBI GATC 3 cut(s) 111, 431, 493
BstMWI GCNNNNNNNGC 3 cut(s) 164, 341, 509
BstNSI RCATGY 1 cut(s) 281
BstV1I GCAGC 2 cut(s) 344, 475
BstV2I GAAGAC 1 cut(s) 380
BsuRI GGCC 2 cut(s) 103, 530
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 4 cut(s) 150, 218, 418, 525
BtsI GCAGTG 2 cut(s) 174, 245
BtsIMutI CAGTG 3 cut(s) 174, 245, 285
Cac8I GCNNGC 1 cut(s) 505
Cfr13I GGNCC 1 cut(s) 134
CseI GACGC 1 cut(s) 454
Csp6I GTAC 1 cut(s) 427
CviAII CATG 1 cut(s) 278
CviQI GTAC 1 cut(s) 427
DpnI GATC 3 cut(s) 113, 433, 495
DpnII GATC 3 cut(s) 111, 431, 493
EaeI YGGCCR 2 cut(s) 101, 528
EciI GGCGGA 2 cut(s) 322, 522
Ecl136II GAGCTC 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 134
Eco53kI GAGCTC 1 cut(s) 312
EcoICRI GAGCTC 1 cut(s) 312
EcoT22I ATGCAT 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 314
FaeI CATG 1 cut(s) 281
FaiI YATR 5 cut(s) 23, 188, 190, 251, 279
FatI CATG 1 cut(s) 277
FauI CCCGC 1 cut(s) 141
FauNDI CATATG 1 cut(s) 188
FblI GTMKAC 1 cut(s) 468
Fnu4HI GCNGC 4 cut(s) 156, 333, 367, 489
FokI GGATG 4 cut(s) 157, 225, 425, 532
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 4 cut(s) 156, 333, 367, 489
FspBI CTAG 1 cut(s) 26
GluI GCNGC 4 cut(s) 156, 333, 367, 489
GsaI CCCAGC 1 cut(s) 299
HaeIII GGCC 2 cut(s) 103, 530
HapII CCGG 1 cut(s) 462
HgaI GACGC 1 cut(s) 454
Hin1I GRCGYC 2 cut(s) 458, 465
Hin1II CATG 1 cut(s) 281
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HinfI GANTC 1 cut(s) 41
HpaII CCGG 1 cut(s) 462
Hpy166II GTNNAC 2 cut(s) 456, 469
Hpy188I TCNGA 2 cut(s) 46, 539
Hpy8I GTNNAC 2 cut(s) 456, 469
Hpy99I CGWCG 4 cut(s) 16, 387, 470, 473
HpyAV CCTTC 1 cut(s) 72
HpyCH4IV ACGT 3 cut(s) 14, 458, 471
HpyCH4V TGCA 3 cut(s) 53, 253, 277
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 341, 509
HpySE526I ACGT 3 cut(s) 14, 458, 471
Hsp92I GRCGYC 2 cut(s) 458, 465
Hsp92II CATG 1 cut(s) 281
KpnI GGTACC 1 cut(s) 430
Kzo9I GATC 3 cut(s) 111, 431, 493
LmnI GCTCC 3 cut(s) 226, 309, 509
Lsp1109I GCAGC 2 cut(s) 344, 475
LweI GCATC 2 cut(s) 40, 135
MaeI CTAG 1 cut(s) 26
MaeII ACGT 3 cut(s) 14, 458, 471
MalI GATC 3 cut(s) 113, 433, 495
MboI GATC 3 cut(s) 111, 431, 493
MboII GAAGA 3 cut(s) 46, 107, 380
MfeI CAATTG 1 cut(s) 225
MhlI GDGCHC 2 cut(s) 287, 314
MlsI TGGCCA 2 cut(s) 103, 530
MluCI AATT 2 cut(s) 115, 225
MluNI TGGCCA 2 cut(s) 103, 530
MmeI TCCRAC 1 cut(s) 497
MnlI CCTC 7 cut(s) 68, 169, 202, 238, 253, 355, 403
Mox20I TGGCCA 2 cut(s) 103, 530
Mph1103I ATGCAT 1 cut(s) 279
MscI TGGCCA 2 cut(s) 103, 530
MseI TTAA 4 cut(s) 84, 272, 393, 498
Msp20I TGGCCA 2 cut(s) 103, 530
MspCI CTTAAG 2 cut(s) 83, 497
MspI CCGG 1 cut(s) 462
MunI CAATTG 1 cut(s) 225
MwoI GCNNNNNNNGC 3 cut(s) 164, 341, 509
NdeI CATATG 1 cut(s) 188
NdeII GATC 3 cut(s) 111, 431, 493
NlaIII CATG 1 cut(s) 281
NlaIV GGNNCC 2 cut(s) 180, 428
NsiI ATGCAT 1 cut(s) 279
NspI RCATGY 1 cut(s) 281
PcsI WCGNNNNNNNCGW 1 cut(s) 474
PfeI GAWTC 1 cut(s) 41
PflFI GACNNNGTC 1 cut(s) 473
PkrI GCNGC 4 cut(s) 157, 334, 368, 490
Psp124BI GAGCTC 1 cut(s) 314
PspFI CCCAGC 1 cut(s) 295
PspN4I GGNNCC 2 cut(s) 180, 428
PspPI GGNCC 1 cut(s) 134
PsyI GACNNNGTC 1 cut(s) 473
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
SacI GAGCTC 1 cut(s) 314
SalI GTCGAC 1 cut(s) 467
SaqAI TTAA 4 cut(s) 84, 272, 393, 498
SatI GCNGC 4 cut(s) 156, 333, 367, 489
Sau3AI GATC 3 cut(s) 111, 431, 493
Sau96I GGNCC 1 cut(s) 134
SduI GDGCHC 2 cut(s) 287, 314
SetI ASST 8 cut(s) 17, 126, 143, 184, 264, 314, 461, 474
SfaNI GCATC 2 cut(s) 40, 135
SgrDI CGTCGACG 1 cut(s) 467
SinI GGWCC 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 83, 497
SmoI CTYRAG 2 cut(s) 83, 497
Sse9I AATT 2 cut(s) 115, 225
SsiI CCGC 5 cut(s) 148, 155, 307, 366, 507
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 314
TaiI ACGT 3 cut(s) 17, 461, 474
TaqI TCGA 3 cut(s) 64, 468, 477
TasI AATT 2 cut(s) 115, 225
TauI GCSGC 2 cut(s) 158, 369
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 4 cut(s) 84, 272, 393, 498
Tru9I TTAA 4 cut(s) 84, 272, 393, 498
TscAI CASTG 3 cut(s) 174, 245, 292
TseI GCWGC 2 cut(s) 332, 488
TspDTI ATGAA 2 cut(s) 108, 175
TspRI CASTG 3 cut(s) 174, 245, 292
Tth111I GACNNNGTC 1 cut(s) 473
Vha464I CTTAAG 2 cut(s) 83, 497
VpaK11BI GGWCC 1 cut(s) 134
XceI RCATGY 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 468
XspI CTAG 1 cut(s) 26
ZraI GACGTC 1 cut(s) 459
Zsp2I ATGCAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.