Rh1CG017800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0018659
Physical Location & Seq
Forward (+)
2962013 .. 2963798
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG017800.1

Sequence Viewer

Length: 648 bp
ATGTTACTCTCTCTTGAGAGGTGGGGGCTGCGGCGTCCAGGTGACGGCCTGATATTGGTTCGCAGGGATGGGGGTTTCCTTTCCTCAAAGGGCAAGGAGATGGAGGGCGGCGGGTTTCTCTGTCGTCGATCTCTCAAAAACTTTCAAGGTGAAGATGATGGTGGTGTATGGTATCCATCTGACCGTATCAGGATCAGAACTAGGGTTCTACGTCTTGGGTGGACGTCCGGTATCGACGTTGTTGAATGGGTGGCTGCTGGTTTTCGGGCTGCCAGGATGGAAGGCTGGAGGAGCGAGTTTGATGGGCTTGGCCATCGTCTGATGCAGCTGAGGATTGTAGCTGGTTGTAGGGACGTGATGGCTCTGAACCCGGCGGCGATTGGGGCTGGCTCGGTTAATGTTAGCGGTGGCGAGATGCTTGTCAGCGGTGGTGTAGATGGTGTGGAGATGTTGACTGCTGGCCTGTGGCCTAGGATTTTCTCTAGGTTCATGGGTTGGGGGGTCAATGTATTTGGGCTTGGGTTCGAGTCCATTGGCTTGGGCTTGGACTATTGTCTTCCTTTTTCTAGTTTATTTTATAGCAATTCTTCTAGTTTTGTGGGAGGAATCTATAATTTCTCTTTGAGATTTATCACCAAAAATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

23.62

Weight (kDa)

9.44

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018659)

Species Orthologous Gene IDs
rosa_laevigata RLG00000012775 RLG00000012778
rosa_multiflora Rmu_sc0003743.1_g000020
rosa_rugosa Rorug06G0159900 Rorug06G0159900
rosa_samantha Rh1AG019900 Rh1BG015100 Rh1CG017700 Rh1CG017800 Rh1DG015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 227
AciI CCGC 6 cut(s) 31, 108, 111, 374, 405, 426
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 1 cut(s) 310
AcyI GRCGYC 2 cut(s) 34, 224
AfiI CCNNNNNNNGG 2 cut(s) 44, 55
AgsI TTSAA 2 cut(s) 146, 245
AjiI CACGTC 1 cut(s) 355
AjnI CCWGG 2 cut(s) 37, 272
AluBI AGCT 2 cut(s) 328, 341
AluI AGCT 2 cut(s) 328, 341
AlwI GGATC 1 cut(s) 200
AoxI GGCC 4 cut(s) 46, 310, 460, 467
ApeKI GCWGC 4 cut(s) 28, 254, 269, 325
AspA2I CCTAGG 1 cut(s) 470
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 3 cut(s) 53, 161, 625
AvrII CCTAGG 1 cut(s) 470
BalI TGGCCA 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 548
BbvCI CCTCAGC 1 cut(s) 329
BbvI GCAGC 4 cut(s) 15, 241, 256, 337
BccI CCATC 9 cut(s) 62, 94, 152, 184, 271, 296, 321, 352, 431
BceAI ACGGC 1 cut(s) 61
BciT130I CCWGG 2 cut(s) 39, 274
BciVI GTATCC 1 cut(s) 183
BcnI CCSGG 1 cut(s) 371
BfaI CTAG 5 cut(s) 201, 471, 483, 567, 591
BfuI GTATCC 1 cut(s) 183
BisI GCNGC 7 cut(s) 29, 32, 109, 255, 270, 326, 375
BlnI CCTAGG 1 cut(s) 470
BlsI GCNGC 7 cut(s) 30, 33, 110, 256, 271, 327, 376
Bme1390I CCNGG 3 cut(s) 39, 274, 371
BmgBI CACGTC 1 cut(s) 355
BmrFI CCNGG 3 cut(s) 39, 274, 371
BmsI GCATC 2 cut(s) 312, 405
BoxI GACNNNNGTC 1 cut(s) 552
BpiI GAAGAC 1 cut(s) 548
BpmI CTGGAG 1 cut(s) 307
Bpu10I CCTNAGC 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 371
BsaHI GRCGYC 2 cut(s) 34, 224
BsaJI CCNNGG 1 cut(s) 470
BsaWI WCCGGW 1 cut(s) 227
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 55
BseBI CCWGG 2 cut(s) 39, 274
BseDI CCNNGG 1 cut(s) 470
BseGI GGATG 2 cut(s) 73, 282
BseLI CCNNNNNNNGG 2 cut(s) 44, 55
BseMII CTCAG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 304
BseXI GCAGC 4 cut(s) 15, 241, 256, 337
BshFI GGCC 4 cut(s) 48, 312, 462, 469
BsiSI CCGG 2 cut(s) 228, 371
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 2 cut(s) 44, 55
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 4 cut(s) 48, 312, 462, 469
Bsp143I GATC 2 cut(s) 128, 192
BspACI CCGC 6 cut(s) 31, 108, 111, 374, 405, 426
BspANI GGCC 4 cut(s) 48, 312, 462, 469
BspCNI CTCAG 1 cut(s) 321
BspPI GGATC 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 470
BssMI GATC 2 cut(s) 128, 192
BssNI GRCGYC 2 cut(s) 34, 224
BssT1I CCWWGG 1 cut(s) 470
Bst2UI CCWGG 2 cut(s) 39, 274
Bst4CI ACNGT 1 cut(s) 185
BstACI GRCGYC 2 cut(s) 34, 224
BstC8I GCNNGC 2 cut(s) 388, 460
BstDEI CTNAG 1 cut(s) 329
BstF5I GGATG 2 cut(s) 73, 282
BstKTI GATC 2 cut(s) 131, 195
BstMBI GATC 2 cut(s) 128, 192
BstMWI GCNNNNNNNGC 2 cut(s) 291, 383
BstNI CCWGG 2 cut(s) 39, 274
BstPAI GACNNNNGTC 1 cut(s) 552
BstSCI CCNGG 3 cut(s) 37, 272, 369
BstV1I GCAGC 4 cut(s) 15, 241, 256, 337
BstV2I GAAGAC 1 cut(s) 548
BstXI CCANNNNNNTGG 1 cut(s) 538
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 4 cut(s) 48, 312, 462, 469
BtrI CACGTC 1 cut(s) 355
BtsCI GGATG 2 cut(s) 73, 282
Cac8I GCNNGC 2 cut(s) 388, 460
CseI GACGC 1 cut(s) 23
CviAII CATG 1 cut(s) 490
DdeI CTNAG 1 cut(s) 329
DpnI GATC 2 cut(s) 130, 194
DpnII GATC 2 cut(s) 128, 192
EaeI YGGCCR 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 470
EcoRII CCWGG 2 cut(s) 37, 272
EcoT14I CCWWGG 1 cut(s) 470
ErhI CCWWGG 1 cut(s) 470
FaeI CATG 1 cut(s) 493
FaiI YATR 4 cut(s) 169, 491, 579, 612
FaqI GGGAC 1 cut(s) 365
FatI CATG 1 cut(s) 489
FauI CCCGC 1 cut(s) 104
Fnu4HI GCNGC 7 cut(s) 29, 32, 109, 255, 270, 326, 375
FokI GGATG 2 cut(s) 80, 289
Fsp4HI GCNGC 7 cut(s) 29, 32, 109, 255, 270, 326, 375
FspBI CTAG 5 cut(s) 201, 471, 483, 567, 591
GluI GCNGC 7 cut(s) 29, 32, 109, 255, 270, 326, 375
GsuI CTGGAG 1 cut(s) 307
HaeIII GGCC 4 cut(s) 48, 312, 462, 469
HapII CCGG 2 cut(s) 228, 371
HgaI GACGC 1 cut(s) 23
Hin1I GRCGYC 2 cut(s) 34, 224
Hin1II CATG 1 cut(s) 493
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HinfI GANTC 2 cut(s) 527, 606
HpaII CCGG 2 cut(s) 228, 371
HphI GGTGA 3 cut(s) 53, 161, 625
Hpy166II GTNNAC 2 cut(s) 222, 453
Hpy188I TCNGA 5 cut(s) 181, 197, 321, 366, 647
Hpy188III TCNNGA 2 cut(s) 14, 190
Hpy8I GTNNAC 2 cut(s) 222, 453
Hpy99I CGWCG 2 cut(s) 129, 239
HpyAV CCTTC 1 cut(s) 275
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 4 cut(s) 211, 224, 237, 354
HpyCH4V TGCA 1 cut(s) 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 291, 383
HpyF3I CTNAG 1 cut(s) 329
HpySE526I ACGT 4 cut(s) 211, 224, 237, 354
Hsp92I GRCGYC 2 cut(s) 34, 224
Hsp92II CATG 1 cut(s) 493
Kzo9I GATC 2 cut(s) 128, 192
LmnI GCTCC 1 cut(s) 291
Lsp1109I GCAGC 4 cut(s) 15, 241, 256, 337
LweI GCATC 2 cut(s) 312, 405
MaeI CTAG 5 cut(s) 201, 471, 483, 567, 591
MaeII ACGT 4 cut(s) 211, 224, 237, 354
MaeIII GTNAC 2 cut(s) 3, 41
MalI GATC 2 cut(s) 130, 194
MboI GATC 2 cut(s) 128, 192
MboII GAAGA 3 cut(s) 164, 548, 579
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 2 cut(s) 583, 613
MluNI TGGCCA 1 cut(s) 312
MlyI GAGTC 1 cut(s) 536
MnlI CCTC 6 cut(s) 12, 94, 97, 282, 324, 596
Mox20I TGGCCA 1 cut(s) 312
MscI TGGCCA 1 cut(s) 312
MseI TTAA 1 cut(s) 396
Msp20I TGGCCA 1 cut(s) 312
MspA1I CMGCKG 2 cut(s) 328, 426
MspI CCGG 2 cut(s) 228, 371
MspR9I CCNGG 3 cut(s) 39, 274, 371
MvaI CCWGG 2 cut(s) 39, 274
MwoI GCNNNNNNNGC 2 cut(s) 291, 383
NciI CCSGG 1 cut(s) 371
NdeII GATC 2 cut(s) 128, 192
NlaIII CATG 1 cut(s) 493
NmuCI GTSAC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 606
PkrI GCNGC 7 cut(s) 30, 33, 110, 256, 271, 327, 376
PleI GAGTC 1 cut(s) 535
PpsI GAGTC 1 cut(s) 535
PshAI GACNNNNGTC 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 37, 272
PspGI CCWGG 2 cut(s) 37, 272
PvuII CAGCTG 1 cut(s) 328
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 7 cut(s) 29, 32, 109, 255, 270, 326, 375
Sau3AI GATC 2 cut(s) 128, 192
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 3 cut(s) 39, 274, 371
SfaNI GCATC 2 cut(s) 312, 405
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 2 cut(s) 583, 613
SsiI CCGC 6 cut(s) 31, 108, 111, 374, 405, 426
SspMI CTAG 5 cut(s) 201, 471, 483, 567, 591
StyD4I CCNGG 3 cut(s) 37, 272, 369
StyI CCWWGG 1 cut(s) 470
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 4 cut(s) 214, 227, 240, 357
TaqI TCGA 3 cut(s) 127, 234, 525
TasI AATT 2 cut(s) 583, 613
TauI GCSGC 3 cut(s) 34, 111, 377
TfiI GAWTC 1 cut(s) 606
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 4 cut(s) 28, 254, 269, 325
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 478
XmaJI CCTAGG 1 cut(s) 470
XspI CTAG 5 cut(s) 201, 471, 483, 567, 591
ZraI GACGTC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.