Rh1BG015100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
2282915 .. 2333433
50519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG015100.1

Sequence Viewer

Length: 300 bp
ATGGCGCAAAAAAAAGGAAACGATGTAGTCTCAGCAAAAGATATGTTCCAACCCTGCAACGTGGAGGAAGAAACACATGATGAGACAATAATTTCAATCTCTATCCCTGAAATAGACGTCGAACATGAGGACTGGGCAACCCGGCTCCAATTAATCAATCAGCATCTAATAAGCCAATTACACATTTCATTATTTAATTCATCTAGTTTTTTGTTTTTGGAGGATAAGCACAAGAACCAGAAATGTACAGATAAAGAAAGAAAGCAAAAGCATCTAATAAAAAAACAACTATACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.66

Weight (kDa)

6.28

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018659)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 247
AgsI TTSAA 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 34, 77
AseI ATTAAT 1 cut(s) 152
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 142
BcnI CCSGG 1 cut(s) 142
BcoDI GTCTC 2 cut(s) 34, 77
BfaI CTAG 1 cut(s) 204
Bme1390I CCNGG 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 142
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 2 cut(s) 172, 280
BmuI ACTGGG 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 142
BsaHI GRCGYC 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 137
BsiSI CCGG 1 cut(s) 142
BsmAI GTCTC 2 cut(s) 34, 77
Bsp1407I TGTACA 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 146
BsrGI TGTACA 1 cut(s) 245
BsrI ACTGG 1 cut(s) 137
BssNI GRCGYC 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 117
BstAUI TGTACA 1 cut(s) 245
BstDEI CTNAG 1 cut(s) 31
BstHHI GCGC 1 cut(s) 7
BstMAI GTCTC 2 cut(s) 34, 77
BstSCI CCNGG 1 cut(s) 140
CfoI GCGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 246
CviAII CATG 2 cut(s) 77, 125
CviJI RGCY 2 cut(s) 145, 174
CviKI_1 RGCY 2 cut(s) 145, 174
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 1 cut(s) 31
FaeI CATG 2 cut(s) 80, 128
FaiI YATR 4 cut(s) 44, 78, 126, 292
FatI CATG 2 cut(s) 76, 124
FspBI CTAG 1 cut(s) 204
GlaI GCGC 1 cut(s) 6
HapII CCGG 1 cut(s) 142
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 2 cut(s) 80, 128
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HpaII CCGG 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 122
HpyCH4IV ACGT 2 cut(s) 60, 117
HpyCH4V TGCA 1 cut(s) 57
HpyF3I CTNAG 1 cut(s) 31
HpySE526I ACGT 2 cut(s) 60, 117
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 2 cut(s) 80, 128
HspAI GCGC 1 cut(s) 5
LmnI GCTCC 1 cut(s) 150
LpnPI CCDG 5 cut(s) 67, 118, 120, 155, 251
LweI GCATC 2 cut(s) 172, 280
MaeI CTAG 1 cut(s) 204
MaeII ACGT 2 cut(s) 60, 117
MboII GAAGA 1 cut(s) 80
MluCI AATT 4 cut(s) 90, 149, 176, 196
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 3 cut(s) 58, 121, 214
MseI TTAA 2 cut(s) 152, 195
MspI CCGG 1 cut(s) 142
MspR9I CCNGG 1 cut(s) 142
NciI CCSGG 1 cut(s) 142
NlaIII CATG 2 cut(s) 80, 128
NlaIV GGNNCC 1 cut(s) 146
PshBI ATTAAT 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 146
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SaqAI TTAA 2 cut(s) 152, 195
ScrFI CCNGG 1 cut(s) 142
SetI ASST 2 cut(s) 63, 120
SfaNI GCATC 2 cut(s) 172, 280
Sse9I AATT 4 cut(s) 90, 149, 176, 196
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 140
TaiI ACGT 2 cut(s) 63, 120
TaqI TCGA 1 cut(s) 120
TasI AATT 4 cut(s) 90, 149, 176, 196
TatI WGTACW 1 cut(s) 245
Tru1I TTAA 2 cut(s) 152, 195
Tru9I TTAA 2 cut(s) 152, 195
TspDTI ATGAA 2 cut(s) 177, 189
VspI ATTAAT 1 cut(s) 152
XspI CTAG 1 cut(s) 204
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.