Rh1DG015100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018659
Physical Location & Seq
Forward (+)
2504346 .. 2504888
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG015100.1

Sequence Viewer

Length: 543 bp
ATGTTACTCTCTCTTGAGAGGTGTTGGCTGTGGCGTCCAGGTGACGGCCTGATATTGGTTCACAGGGATGGGGGTTTCCTTTCCTCAAAGGGCAAGGAGATGGAGGGCGGCGGGTTTCTCTGTCGTCGATCTCTCAAAAACTTTCAAGGTGAAGATGATGGCGGCGTATGGTATCGATCTGACCGTATCAGGATCAGAACTCGGGTTCTACGTCTTGGGTGGACGTCCGGCATCGACGTTGTTGAATGGGTGGCTGCTGGTTTTCGGGCTGCCAGGATAGAAGGCTGGAGGAGCGAGTTTGATGGGCTTGGCCATCGTCTGATGCAGCTGAGGATTGTAGCTGGTTGTAGGGATGTGATGGCTCTTAACCCGGCGGCGATTGGGGCTGGCTCGGTTAATGTTGGCGGTGGCGAGATGCTTGTCAGCGGTGGTGTAGATGGTGTGGAGATGTTGACTACTGGCCTGTGGCCTAGGATTTTCTCTAGGTTCATGGGTTGGGGGGTCAATGTATTTGGGCTTGGACTATTGTCTTCCTTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.82

Weight (kDa)

9.4

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018659)

Species Orthologous Gene IDs
rosa_laevigata RLG00000012775 RLG00000012778
rosa_multiflora Rmu_sc0003743.1_g000020
rosa_rugosa Rorug06G0159900 Rorug06G0159900
rosa_samantha Rh1AG019900 Rh1BG015100 Rh1CG017700 Rh1CG017800 Rh1DG015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 227
AciI CCGC 6 cut(s) 108, 111, 162, 374, 405, 426
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 1 cut(s) 310
AcyI GRCGYC 2 cut(s) 34, 224
AfiI CCNNNNNNNGG 2 cut(s) 44, 55
AgsI TTSAA 2 cut(s) 146, 245
AjnI CCWGG 2 cut(s) 37, 272
AluBI AGCT 2 cut(s) 328, 341
AluI AGCT 2 cut(s) 328, 341
AlwI GGATC 1 cut(s) 200
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 4 cut(s) 46, 310, 460, 467
ApeKI GCWGC 3 cut(s) 254, 269, 325
AspA2I CCTAGG 1 cut(s) 470
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 2 cut(s) 53, 161
AvaI CYCGRG 1 cut(s) 201
AvrII CCTAGG 1 cut(s) 470
BalI TGGCCA 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 522
BbvCI CCTCAGC 1 cut(s) 329
BbvI GCAGC 3 cut(s) 241, 256, 337
BccI CCATC 7 cut(s) 62, 94, 152, 296, 321, 352, 431
BceAI ACGGC 1 cut(s) 61
BciT130I CCWGG 2 cut(s) 39, 274
BcnI CCSGG 1 cut(s) 371
BfaI CTAG 3 cut(s) 471, 483, 541
BisI GCNGC 6 cut(s) 109, 163, 255, 270, 326, 375
BlnI CCTAGG 1 cut(s) 470
BlsI GCNGC 6 cut(s) 110, 164, 256, 271, 327, 376
Bme1390I CCNGG 3 cut(s) 39, 274, 371
BmeT110I CYCGRG 1 cut(s) 201
BmrFI CCNGG 3 cut(s) 39, 274, 371
BmsI GCATC 3 cut(s) 240, 312, 405
BoxI GACNNNNGTC 1 cut(s) 526
BpiI GAAGAC 1 cut(s) 522
BpmI CTGGAG 1 cut(s) 307
Bpu10I CCTNAGC 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 371
Bsa29I ATCGAT 1 cut(s) 175
BsaHI GRCGYC 2 cut(s) 34, 224
BsaJI CCNNGG 1 cut(s) 470
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 55
Bse1I ACTGG 1 cut(s) 463
BseBI CCWGG 2 cut(s) 39, 274
BseCI ATCGAT 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 470
BseGI GGATG 2 cut(s) 73, 358
BseLI CCNNNNNNNGG 2 cut(s) 44, 55
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 1 cut(s) 304
BseXI GCAGC 3 cut(s) 241, 256, 337
BshFI GGCC 4 cut(s) 48, 312, 462, 469
BshVI ATCGAT 1 cut(s) 175
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 2 cut(s) 228, 371
BslI CCNNNNNNNGG 2 cut(s) 44, 55
BsnI GGCC 4 cut(s) 48, 312, 462, 469
BsoBI CYCGRG 1 cut(s) 201
Bsp143I GATC 3 cut(s) 128, 176, 192
BspACI CCGC 6 cut(s) 108, 111, 162, 374, 405, 426
BspANI GGCC 4 cut(s) 48, 312, 462, 469
BspCNI CTCAG 1 cut(s) 321
BspDI ATCGAT 1 cut(s) 175
BspPI GGATC 1 cut(s) 200
BsrI ACTGG 1 cut(s) 463
BssECI CCNNGG 1 cut(s) 470
BssMI GATC 3 cut(s) 128, 176, 192
BssNI GRCGYC 2 cut(s) 34, 224
BssT1I CCWWGG 1 cut(s) 470
Bst2UI CCWGG 2 cut(s) 39, 274
Bst4CI ACNGT 1 cut(s) 185
BstACI GRCGYC 2 cut(s) 34, 224
BstC8I GCNNGC 1 cut(s) 388
BstDEI CTNAG 1 cut(s) 329
BstF5I GGATG 2 cut(s) 73, 358
BstKTI GATC 3 cut(s) 131, 179, 195
BstMBI GATC 3 cut(s) 128, 176, 192
BstMWI GCNNNNNNNGC 2 cut(s) 291, 383
BstNI CCWGG 2 cut(s) 39, 274
BstPAI GACNNNNGTC 1 cut(s) 526
BstSCI CCNGG 3 cut(s) 37, 272, 369
BstV1I GCAGC 3 cut(s) 241, 256, 337
BstV2I GAAGAC 1 cut(s) 522
Bsu15I ATCGAT 1 cut(s) 175
BsuRI GGCC 4 cut(s) 48, 312, 462, 469
BsuTUI ATCGAT 1 cut(s) 175
BtsCI GGATG 2 cut(s) 73, 358
Cac8I GCNNGC 1 cut(s) 388
ClaI ATCGAT 1 cut(s) 175
CseI GACGC 1 cut(s) 23
CviAII CATG 1 cut(s) 490
DdeI CTNAG 1 cut(s) 329
DpnI GATC 3 cut(s) 130, 178, 194
DpnII GATC 3 cut(s) 128, 176, 192
EaeI YGGCCR 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 201
EcoRII CCWGG 2 cut(s) 37, 272
EcoT14I CCWWGG 1 cut(s) 470
ErhI CCWWGG 1 cut(s) 470
FaeI CATG 1 cut(s) 493
FaiI YATR 2 cut(s) 169, 491
FatI CATG 1 cut(s) 489
FauI CCCGC 1 cut(s) 104
Fnu4HI GCNGC 6 cut(s) 109, 163, 255, 270, 326, 375
FokI GGATG 2 cut(s) 80, 365
Fsp4HI GCNGC 6 cut(s) 109, 163, 255, 270, 326, 375
FspBI CTAG 3 cut(s) 471, 483, 541
GluI GCNGC 6 cut(s) 109, 163, 255, 270, 326, 375
GsuI CTGGAG 1 cut(s) 307
HaeIII GGCC 4 cut(s) 48, 312, 462, 469
HapII CCGG 2 cut(s) 228, 371
HgaI GACGC 1 cut(s) 23
Hin1I GRCGYC 2 cut(s) 34, 224
Hin1II CATG 1 cut(s) 493
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HpaII CCGG 2 cut(s) 228, 371
HphI GGTGA 2 cut(s) 53, 161
Hpy166II GTNNAC 3 cut(s) 61, 222, 453
Hpy188I TCNGA 3 cut(s) 181, 197, 321
Hpy188III TCNNGA 2 cut(s) 14, 190
Hpy8I GTNNAC 3 cut(s) 61, 222, 453
Hpy99I CGWCG 2 cut(s) 129, 239
HpyAV CCTTC 1 cut(s) 275
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 3 cut(s) 211, 224, 237
HpyCH4V TGCA 1 cut(s) 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 291, 383
HpyF3I CTNAG 1 cut(s) 329
HpySE526I ACGT 3 cut(s) 211, 224, 237
Hsp92I GRCGYC 2 cut(s) 34, 224
Hsp92II CATG 1 cut(s) 493
Kzo9I GATC 3 cut(s) 128, 176, 192
LmnI GCTCC 1 cut(s) 291
Lsp1109I GCAGC 3 cut(s) 241, 256, 337
LweI GCATC 3 cut(s) 240, 312, 405
MaeI CTAG 3 cut(s) 471, 483, 541
MaeII ACGT 3 cut(s) 211, 224, 237
MaeIII GTNAC 2 cut(s) 3, 41
MalI GATC 3 cut(s) 130, 178, 194
MboI GATC 3 cut(s) 128, 176, 192
MboII GAAGA 2 cut(s) 164, 522
MlsI TGGCCA 1 cut(s) 312
MluNI TGGCCA 1 cut(s) 312
MnlI CCTC 5 cut(s) 12, 94, 97, 282, 324
Mox20I TGGCCA 1 cut(s) 312
MscI TGGCCA 1 cut(s) 312
MseI TTAA 2 cut(s) 366, 396
MslI CAYNNNNRTG 1 cut(s) 66
Msp20I TGGCCA 1 cut(s) 312
MspA1I CMGCKG 2 cut(s) 328, 426
MspI CCGG 2 cut(s) 228, 371
MspR9I CCNGG 3 cut(s) 39, 274, 371
MvaI CCWGG 2 cut(s) 39, 274
MwoI GCNNNNNNNGC 2 cut(s) 291, 383
NciI CCSGG 1 cut(s) 371
NdeII GATC 3 cut(s) 128, 176, 192
NlaIII CATG 1 cut(s) 493
NmuCI GTSAC 1 cut(s) 41
PcsI WCGNNNNNNNCGW 2 cut(s) 181, 208
PkrI GCNGC 6 cut(s) 110, 164, 256, 271, 327, 376
PshAI GACNNNNGTC 1 cut(s) 526
Psp6I CCWGG 2 cut(s) 37, 272
PspGI CCWGG 2 cut(s) 37, 272
PvuII CAGCTG 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 66
SaqAI TTAA 2 cut(s) 366, 396
SatI GCNGC 6 cut(s) 109, 163, 255, 270, 326, 375
Sau3AI GATC 3 cut(s) 128, 176, 192
ScrFI CCNGG 3 cut(s) 39, 274, 371
SetI ASST 9 cut(s) 23, 43, 151, 214, 227, 240, 330, 343, 488
SfaNI GCATC 3 cut(s) 240, 312, 405
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
SsiI CCGC 6 cut(s) 108, 111, 162, 374, 405, 426
SspMI CTAG 3 cut(s) 471, 483, 541
StyD4I CCNGG 3 cut(s) 37, 272, 369
StyI CCWWGG 1 cut(s) 470
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 3 cut(s) 214, 227, 240
TaqI TCGA 3 cut(s) 127, 175, 234
TauI GCSGC 3 cut(s) 111, 165, 377
Tru1I TTAA 2 cut(s) 366, 396
Tru9I TTAA 2 cut(s) 366, 396
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 3 cut(s) 254, 269, 325
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 478
XmaJI CCTAGG 1 cut(s) 470
XspI CTAG 3 cut(s) 471, 483, 541
ZraI GACGTC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.