RLG00000012778

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018659
Physical Location & Seq
Reverse (-)
22263691 .. 22265343
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012778

Sequence Viewer

Length: 765 bp
ATGACTGTAATGGTTGGGGTTGGCTCTGCTCGCCGGTTGTGCTGCGTGAGCTTCCGGGTGCCTCCAAGCAAGCGAAGATCTTGTGGAATTGGGGCTAGGCAAGCGTGGTGTCTTACTTTGCAGATTCAACCACGTAAGGGACGACTCAAACGACTGATGGATCAGGAACTCCCAAAATCTCAGTGGTCCTTGTGTGGAGGTTTAGGCAGAATTGTTTGGGCTGCTATGGAGGAGGCGACGTGGCTCATACTAGCAAGGAAGATTGAATCTGACGATGCAAGTCGGGTTCGACCACAAAGAGGAAGGCTTAAGGACAATGAAGATTGGCCAAAAAGGATCAATTTTCAGGTAAAGATTGGACCAAGCTGGATGCGGGTGGCGGCGACACAGGCAGTGGGAGAGGCACCTTTCATATGCCCAGAACAAAGTGGCGAGGGATGTCCTGCTCCAATTGGCAAGGGGCAGTGCGAGGCTATGCACTTTGAGGTGTGGTGGTTAATGCATGTGAGCACTGATTTGCTGGGGCAATGGCGGAGCTCGGTTTATTTGGAAACGGCAGCCGATAACGCAGGGCGTAGGGAGATGGAGGGCGGCGAGTTTCTCTGTCGTCGTCTTCTTAAAAACTTTCAAGTTGAGGATGATGGCGTTTGGTACCGATCTAACAATATCAGGGTTGGGTGGACGTCCGGCGTCGACGTTGTCGAACGGGGGGCTGCTGATCTTAAGGCTGGCGGAGCGAGTTGGATGGGCTTGGCCACCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

28.42

Weight (kDa)

9.28

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018659)

Species Orthologous Gene IDs
rosa_laevigata RLG00000012775 RLG00000012778
rosa_multiflora Rmu_sc0003743.1_g000020
rosa_rugosa Rorug06G0159900 Rorug06G0159900
rosa_samantha Rh1AG019900 Rh1BG015100 Rh1CG017700 Rh1CG017800 Rh1DG015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 686
Acc65I GGTACC 1 cut(s) 651
AccB1I GGYRCC 3 cut(s) 58, 403, 651
AccI GTMKAC 1 cut(s) 693
AciI CCGC 5 cut(s) 373, 380, 532, 591, 732
AclWI GGATC 2 cut(s) 168, 344
AcoI YGGCCR 2 cut(s) 326, 753
AcyI GRCGYC 2 cut(s) 683, 690
AfaI GTAC 1 cut(s) 653
AfiI CCNNNNNNNGG 2 cut(s) 137, 299
AflII CTTAAG 2 cut(s) 308, 722
AgsI TTSAA 3 cut(s) 128, 266, 629
AjiI CACGTC 1 cut(s) 240
AluBI AGCT 3 cut(s) 51, 366, 537
AluI AGCT 3 cut(s) 51, 366, 537
Alw21I GWGCWC 2 cut(s) 512, 539
AlwI GGATC 2 cut(s) 168, 344
AoxI GGCC 2 cut(s) 326, 753
ApeKI GCWGC 4 cut(s) 42, 221, 557, 713
Asp718I GGTACC 1 cut(s) 651
AspS9I GGNCC 2 cut(s) 186, 359
AsuC2I CCSGG 1 cut(s) 56
AvaII GGWCC 2 cut(s) 186, 359
BalI TGGCCA 2 cut(s) 328, 755
BanI GGYRCC 3 cut(s) 58, 403, 651
BanII GRGCYC 1 cut(s) 539
BbsI GAAGAC 1 cut(s) 605
Bbv12I GWGCWC 2 cut(s) 512, 539
BbvI GCAGC 4 cut(s) 29, 208, 569, 700
BccI CCATC 4 cut(s) 151, 577, 635, 739
BceAI ACGGC 1 cut(s) 570
BcnI CCSGG 1 cut(s) 56
BfaI CTAG 2 cut(s) 96, 251
BfrI CTTAAG 2 cut(s) 308, 722
BglII AGATCT 1 cut(s) 77
BisI GCNGC 6 cut(s) 43, 222, 381, 558, 592, 714
BlsI GCNGC 6 cut(s) 44, 223, 382, 559, 593, 715
Bme1390I CCNGG 1 cut(s) 56
Bme18I GGWCC 2 cut(s) 186, 359
BmgBI CACGTC 1 cut(s) 240
BmgT120I GGNCC 2 cut(s) 186, 359
BmiI GGNNCC 3 cut(s) 60, 405, 653
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 2 cut(s) 265, 360
BpiI GAAGAC 1 cut(s) 605
BpuMI CCSGG 1 cut(s) 56
BsaAI YACGTR 1 cut(s) 134
BsaHI GRCGYC 2 cut(s) 683, 690
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 299
Bse118I RCCGGY 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 533
BseGI GGATG 4 cut(s) 375, 443, 643, 750
BseLI CCNNNNNNNGG 2 cut(s) 137, 299
BseMI GCAATG 1 cut(s) 533
BseMII CTCAG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 4 cut(s) 29, 208, 569, 700
BseYI CCCAGC 1 cut(s) 520
BshFI GGCC 2 cut(s) 328, 755
BshNI GGYRCC 3 cut(s) 58, 403, 651
BsiHKAI GWGCWC 2 cut(s) 512, 539
BsiSI CCGG 3 cut(s) 34, 55, 687
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 137, 299
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 2 cut(s) 328, 755
Bsp1286I GDGCHC 2 cut(s) 512, 539
Bsp143I GATC 5 cut(s) 77, 160, 336, 656, 718
BspACI CCGC 5 cut(s) 373, 380, 532, 591, 732
BspANI GGCC 2 cut(s) 328, 755
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 3 cut(s) 60, 405, 653
BspPI GGATC 2 cut(s) 168, 344
BspT107I GGYRCC 3 cut(s) 58, 403, 651
BspTI CTTAAG 2 cut(s) 308, 722
BsrDI GCAATG 1 cut(s) 533
BsrFI RCCGGY 1 cut(s) 33
BssAI RCCGGY 1 cut(s) 33
BssMI GATC 5 cut(s) 77, 160, 336, 656, 718
BssNI GRCGYC 2 cut(s) 683, 690
Bst4CI ACNGT 1 cut(s) 7
BstACI GRCGYC 2 cut(s) 683, 690
BstAFI CTTAAG 2 cut(s) 308, 722
BstBAI YACGTR 1 cut(s) 134
BstC8I GCNNGC 4 cut(s) 31, 71, 102, 730
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 4 cut(s) 375, 443, 643, 750
BstKTI GATC 5 cut(s) 80, 163, 339, 659, 721
BstMBI GATC 5 cut(s) 77, 160, 336, 656, 718
BstMWI GCNNNNNNNGC 7 cut(s) 30, 39, 48, 101, 389, 566, 734
BstNSI RCATGY 1 cut(s) 506
BstSCI CCNGG 1 cut(s) 54
BstV1I GCAGC 4 cut(s) 29, 208, 569, 700
BstV2I GAAGAC 1 cut(s) 605
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BsuRI GGCC 2 cut(s) 328, 755
BtrI CACGTC 1 cut(s) 240
BtsCI GGATG 4 cut(s) 375, 443, 643, 750
BtsI GCAGTG 2 cut(s) 399, 470
BtsIMutI CAGTG 4 cut(s) 188, 399, 470, 510
Cac8I GCNNGC 4 cut(s) 31, 71, 102, 730
Cfr10I RCCGGY 1 cut(s) 33
Cfr13I GGNCC 2 cut(s) 186, 359
CseI GACGC 1 cut(s) 679
Csp6I GTAC 1 cut(s) 652
CviAII CATG 1 cut(s) 503
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 1 cut(s) 180
DpnI GATC 5 cut(s) 79, 162, 338, 658, 720
DpnII GATC 5 cut(s) 77, 160, 336, 656, 718
EaeI YGGCCR 2 cut(s) 326, 753
EciI GGCGGA 2 cut(s) 547, 747
Ecl136II GAGCTC 1 cut(s) 537
Eco24I GRGCYC 1 cut(s) 539
Eco47I GGWCC 2 cut(s) 186, 359
Eco53kI GAGCTC 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 537
EcoT22I ATGCAT 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 539
FaeI CATG 1 cut(s) 506
FaiI YATR 6 cut(s) 227, 248, 413, 415, 476, 504
FaqI GGGAC 1 cut(s) 153
FatI CATG 1 cut(s) 502
FauI CCCGC 1 cut(s) 366
FauNDI CATATG 1 cut(s) 413
FblI GTMKAC 1 cut(s) 693
Fnu4HI GCNGC 6 cut(s) 43, 222, 381, 558, 592, 714
FokI GGATG 4 cut(s) 382, 450, 650, 757
FriOI GRGCYC 1 cut(s) 539
Fsp4HI GCNGC 6 cut(s) 43, 222, 381, 558, 592, 714
FspBI CTAG 2 cut(s) 96, 251
GluI GCNGC 6 cut(s) 43, 222, 381, 558, 592, 714
GsaI CCCAGC 1 cut(s) 524
HaeIII GGCC 2 cut(s) 328, 755
HapII CCGG 3 cut(s) 34, 55, 687
HgaI GACGC 1 cut(s) 679
Hin1I GRCGYC 2 cut(s) 683, 690
Hin1II CATG 1 cut(s) 506
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HinfI GANTC 3 cut(s) 124, 144, 266
HpaII CCGG 3 cut(s) 34, 55, 687
Hpy166II GTNNAC 2 cut(s) 681, 694
Hpy188I TCNGA 2 cut(s) 271, 764
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 2 cut(s) 681, 694
Hpy99I CGWCG 4 cut(s) 241, 612, 695, 698
HpyAV CCTTC 1 cut(s) 297
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 4 cut(s) 133, 239, 683, 696
HpyCH4V TGCA 4 cut(s) 121, 278, 478, 502
HpyF10VI GCNNNNNNNGC 7 cut(s) 30, 39, 48, 101, 389, 566, 734
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 4 cut(s) 133, 239, 683, 696
Hsp92I GRCGYC 2 cut(s) 683, 690
Hsp92II CATG 1 cut(s) 506
KpnI GGTACC 1 cut(s) 655
Kzo9I GATC 5 cut(s) 77, 160, 336, 656, 718
LmnI GCTCC 3 cut(s) 451, 534, 734
Lsp1109I GCAGC 4 cut(s) 29, 208, 569, 700
LweI GCATC 2 cut(s) 265, 360
MaeI CTAG 2 cut(s) 96, 251
MaeII ACGT 4 cut(s) 133, 239, 683, 696
MalI GATC 5 cut(s) 79, 162, 338, 658, 720
MboI GATC 5 cut(s) 77, 160, 336, 656, 718
MboII GAAGA 4 cut(s) 87, 271, 332, 605
MfeI CAATTG 1 cut(s) 450
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 2 cut(s) 512, 539
MlsI TGGCCA 2 cut(s) 328, 755
MluCI AATT 4 cut(s) 87, 210, 340, 450
MluNI TGGCCA 2 cut(s) 328, 755
MlyI GAGTC 1 cut(s) 138
MmeI TCCRAC 1 cut(s) 722
Mox20I TGGCCA 2 cut(s) 328, 755
Mph1103I ATGCAT 1 cut(s) 504
MscI TGGCCA 2 cut(s) 328, 755
MseI TTAA 4 cut(s) 309, 497, 618, 723
Msp20I TGGCCA 2 cut(s) 328, 755
MspCI CTTAAG 2 cut(s) 308, 722
MspI CCGG 3 cut(s) 34, 55, 687
MspR9I CCNGG 1 cut(s) 56
MunI CAATTG 1 cut(s) 450
MwoI GCNNNNNNNGC 7 cut(s) 30, 39, 48, 101, 389, 566, 734
NciI CCSGG 1 cut(s) 56
NdeI CATATG 1 cut(s) 413
NdeII GATC 5 cut(s) 77, 160, 336, 656, 718
NlaIII CATG 1 cut(s) 506
NlaIV GGNNCC 3 cut(s) 60, 405, 653
NsiI ATGCAT 1 cut(s) 504
NspI RCATGY 1 cut(s) 506
PcsI WCGNNNNNNNCGW 3 cut(s) 139, 148, 699
PfeI GAWTC 2 cut(s) 124, 266
PflFI GACNNNGTC 1 cut(s) 698
PkrI GCNGC 6 cut(s) 44, 223, 382, 559, 593, 715
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
Ppu21I YACGTR 1 cut(s) 134
Psp124BI GAGCTC 1 cut(s) 539
PspFI CCCAGC 1 cut(s) 520
PspN4I GGNNCC 3 cut(s) 60, 405, 653
PspPI GGNCC 2 cut(s) 186, 359
PsuI RGATCY 1 cut(s) 77
PsyI GACNNNGTC 1 cut(s) 698
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
SacI GAGCTC 1 cut(s) 539
SalI GTCGAC 1 cut(s) 692
SaqAI TTAA 4 cut(s) 309, 497, 618, 723
SatI GCNGC 6 cut(s) 43, 222, 381, 558, 592, 714
Sau3AI GATC 5 cut(s) 77, 160, 336, 656, 718
Sau96I GGNCC 2 cut(s) 186, 359
SchI GAGTC 1 cut(s) 138
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 2 cut(s) 512, 539
SfaNI GCATC 2 cut(s) 265, 360
SgrDI CGTCGACG 1 cut(s) 692
SinI GGWCC 2 cut(s) 186, 359
SmlI CTYRAG 2 cut(s) 308, 722
SmoI CTYRAG 2 cut(s) 308, 722
Sse9I AATT 4 cut(s) 87, 210, 340, 450
SsiI CCGC 5 cut(s) 373, 380, 532, 591, 732
SspMI CTAG 2 cut(s) 96, 251
SstI GAGCTC 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 4 cut(s) 136, 242, 686, 699
TaqI TCGA 3 cut(s) 289, 693, 702
TasI AATT 4 cut(s) 87, 210, 340, 450
TauI GCSGC 2 cut(s) 383, 594
TfiI GAWTC 2 cut(s) 124, 266
Tru1I TTAA 4 cut(s) 309, 497, 618, 723
Tru9I TTAA 4 cut(s) 309, 497, 618, 723
TscAI CASTG 4 cut(s) 188, 399, 470, 517
TseI GCWGC 4 cut(s) 42, 221, 557, 713
TspDTI ATGAA 2 cut(s) 333, 400
TspRI CASTG 4 cut(s) 188, 399, 470, 517
Tth111I GACNNNGTC 1 cut(s) 698
Vha464I CTTAAG 2 cut(s) 308, 722
VpaK11BI GGWCC 2 cut(s) 186, 359
XceI RCATGY 1 cut(s) 506
XcmI CCANNNNNNNNNTGG 1 cut(s) 180
XmiI GTMKAC 1 cut(s) 693
XspI CTAG 2 cut(s) 96, 251
ZraI GACGTC 1 cut(s) 684
Zsp2I ATGCAT 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.