Rh1CG017700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
2949265 .. 2952158
2894 bp
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UTR
Exon/CDS
Intron
Rh1CG017700.1

Sequence Viewer

Length: 189 bp
ATGTTCCAACCCTGCAACGTGGAGGAAGAAACACATGATGAGACAATAATCTCAATCTCTATCCCTGAAATAGACGACGAACATGAGGACTGGGAAATAGCCTTGAAAATGCTTCATGACTACCGAGAGCTTGCTGTGGCTCGTGATATGAATGGTGAAACAGCGAGTGTGGCTCGAAGGCAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.2

Weight (kDa)

4.31

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018659)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 106
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 35
AoxI GGCC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 167
BauI CACGAG 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 1 cut(s) 187
BmrI ACTGGG 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 100
BplI GAGNNNNNCTC 2 cut(s) 157, 189
Bse1I ACTGG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 95
BshFI GGCC 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 35
BsnI GGCC 1 cut(s) 185
BspANI GGCC 1 cut(s) 185
BspHI TCATGA 1 cut(s) 115
BsrI ACTGG 1 cut(s) 95
BssSI CACGAG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 132, 183
BstMAI GTCTC 1 cut(s) 35
BstMWI GCNNNNNNNGC 1 cut(s) 170
BsuRI GGCC 1 cut(s) 185
Cac8I GCNNGC 2 cut(s) 132, 183
CciI TCATGA 1 cut(s) 115
CviAII CATG 3 cut(s) 35, 83, 116
CviJI RGCY 5 cut(s) 101, 130, 140, 173, 185
CviKI_1 RGCY 5 cut(s) 101, 130, 140, 173, 185
Eco147I AGGCCT 1 cut(s) 185
FaeI CATG 3 cut(s) 38, 86, 119
FaiI YATR 4 cut(s) 36, 84, 117, 149
FatI CATG 3 cut(s) 34, 82, 115
FspBI CTAG 1 cut(s) 187
HaeIII GGCC 1 cut(s) 185
Hin1II CATG 3 cut(s) 38, 86, 119
HphI GGTGA 1 cut(s) 167
Hpy188III TCNNGA 2 cut(s) 116, 143
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 171
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 3 cut(s) 38, 86, 119
LpnPI CCDG 4 cut(s) 25, 76, 78, 167
MaeI CTAG 1 cut(s) 187
MaeII ACGT 1 cut(s) 18
MboII GAAGA 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 2 cut(s) 16, 79
MwoI GCNNNNNNNGC 1 cut(s) 170
NlaIII CATG 3 cut(s) 38, 86, 119
PagI TCATGA 1 cut(s) 115
PceI AGGCCT 1 cut(s) 185
SetI ASST 2 cut(s) 21, 132
SseBI AGGCCT 1 cut(s) 185
SspMI CTAG 1 cut(s) 187
StuI AGGCCT 1 cut(s) 185
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 175
TspDTI ATGAA 2 cut(s) 104, 164
XspI CTAG 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.