Rh1AG019900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018659
Physical Location & Seq
Forward (+)
3676415 .. 3696965
20551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG019900.1

Sequence Viewer

Length: 867 bp
ATGGCGCAAAAAATAGGAAACGATGTAGTCTCAGCAAAAGATATGTTCCAACCCTGCAACGTGGAGGAAGAAACACATGATGAGACAATAATCTCAATCTCTATCCCTGAAATAGACGACGAACATGAGGACTGGGAAATAGCCTTGAAAATGCTTCATGACTACCGAGAGCTTGCTGTGGCTCGTGATATGAATGGTGAAACAGCGTTACCATATGGTAATCTAATTGATGACATTAGAGTGTGGCTTGAAGGCAGGCCTAGAGTTTCTGTCTCTCATACCCCTAGAAGTACTGCTAATGCAGTGGCACATAGGCTTGTAAGTGAAGCCCATGAATCCGCTGATCAGGTGGGGGCTGTGGCGTCCAGGTGGGGGCTGTGGCGTCCAGGTGACGACCTGATATTGGTTCGCAAGGATGGGGGTTTCCTTTCCTCAAAGGGCAAGGAGATGGAGGGCGGCGGGTTTCTCTGTCGTCGATCTCTCAAAAACTTTCAAGGTGAAGATGATGGCGGCGTATGGTATCGATCTGACCGTATCAGGATCAGAACTCGGGTTCTACATCTTGGGTGGACGTCCGGCATCGACGTTGTTGAATGGGTGGCTGCTGGTTTTCGGGCTGCCAGGATAGAAGGCTGGAGGAGCGAGTTTGATGGGCTTGGCCATCGTCTGATGCAGCTGAGGATTGTAGCTGGTTGTAGGGATGTGATGGCTCTTAACCCGGCGGCGATTGGGGCTGGCTCAGTTAATGTTGGCGGTGGCGAGATGCTTGTCAGCGGTGGTGTAGATGGTGTGGAGATGTTGACTACTGGCCTGTGGCCTAGGATTTTCTCTAGGTTCATGGGTTGGGGGTGGAAGCACAATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

31.98

Weight (kDa)

5.52

Isoelectric Point (pI)

32.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018659)

Species Orthologous Gene IDs
rosa_laevigata RLG00000012775 RLG00000012778
rosa_multiflora Rmu_sc0003743.1_g000020
rosa_rugosa Rorug06G0159900 Rorug06G0159900
rosa_samantha Rh1AG019900 Rh1BG015100 Rh1CG017700 Rh1CG017800 Rh1DG015100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 865
AatII GACGTC 1 cut(s) 575
AciI CCGC 7 cut(s) 339, 456, 459, 510, 722, 753, 774
AclWI GGATC 1 cut(s) 548
AcoI YGGCCR 1 cut(s) 658
AcyI GRCGYC 3 cut(s) 362, 382, 572
AfaI GTAC 1 cut(s) 292
AfiI CCNNNNNNNGG 2 cut(s) 372, 403
AgsI TTSAA 4 cut(s) 148, 251, 494, 593
AjnI CCWGG 3 cut(s) 365, 385, 620
AluBI AGCT 3 cut(s) 172, 676, 689
AluI AGCT 3 cut(s) 172, 676, 689
Alw26I GTCTC 3 cut(s) 34, 77, 277
AlwI GGATC 1 cut(s) 548
Ama87I CYCGRG 1 cut(s) 549
AoxI GGCC 4 cut(s) 257, 658, 808, 815
ApeKI GCWGC 3 cut(s) 602, 617, 673
AspA2I CCTAGG 1 cut(s) 818
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 719
AsuHPI GGTGA 3 cut(s) 209, 401, 509
AvaI CYCGRG 1 cut(s) 549
AvrII CCTAGG 1 cut(s) 818
BalI TGGCCA 1 cut(s) 660
BauI CACGAG 1 cut(s) 183
BbvCI CCTCAGC 1 cut(s) 677
BbvI GCAGC 3 cut(s) 589, 604, 685
BccI CCATC 7 cut(s) 410, 442, 500, 644, 669, 700, 779
BciT130I CCWGG 3 cut(s) 367, 387, 622
BclI TGATCA 1 cut(s) 343
BcnI CCSGG 1 cut(s) 719
BcoDI GTCTC 3 cut(s) 34, 77, 277
BfaI CTAG 4 cut(s) 261, 285, 819, 831
BisI GCNGC 6 cut(s) 457, 511, 603, 618, 674, 723
BlnI CCTAGG 1 cut(s) 818
BlsI GCNGC 6 cut(s) 458, 512, 604, 619, 675, 724
BmcAI AGTACT 1 cut(s) 292
Bme1390I CCNGG 4 cut(s) 367, 387, 622, 719
BmeT110I CYCGRG 1 cut(s) 549
BmrFI CCNGG 4 cut(s) 367, 387, 622, 719
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 3 cut(s) 588, 660, 753
BmuI ACTGGG 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 655
Bpu10I CCTNAGC 1 cut(s) 677
BpuMI CCSGG 1 cut(s) 719
Bsa29I ATCGAT 1 cut(s) 523
BsaHI GRCGYC 3 cut(s) 362, 382, 572
BsaJI CCNNGG 1 cut(s) 818
Bsc4I CCNNNNNNNGG 2 cut(s) 372, 403
Bse1I ACTGG 2 cut(s) 137, 811
BseBI CCWGG 3 cut(s) 367, 387, 622
BseCI ATCGAT 1 cut(s) 523
BseDI CCNNGG 1 cut(s) 818
BseGI GGATG 2 cut(s) 421, 706
BseLI CCNNNNNNNGG 2 cut(s) 372, 403
BseMII CTCAG 3 cut(s) 45, 668, 753
BseNI ACTGG 2 cut(s) 137, 811
BseRI GAGGAG 1 cut(s) 652
BseXI GCAGC 3 cut(s) 589, 604, 685
BshFI GGCC 4 cut(s) 259, 660, 810, 817
BshVI ATCGAT 1 cut(s) 523
BsiHKCI CYCGRG 1 cut(s) 549
BsiSI CCGG 2 cut(s) 576, 719
BslI CCNNNNNNNGG 2 cut(s) 372, 403
BsmAI GTCTC 3 cut(s) 34, 77, 277
BsnI GGCC 4 cut(s) 259, 660, 810, 817
BsoBI CYCGRG 1 cut(s) 549
Bsp143I GATC 4 cut(s) 343, 476, 524, 540
BspACI CCGC 7 cut(s) 339, 456, 459, 510, 722, 753, 774
BspANI GGCC 4 cut(s) 259, 660, 810, 817
BspCNI CTCAG 3 cut(s) 44, 669, 752
BspDI ATCGAT 1 cut(s) 523
BspHI TCATGA 1 cut(s) 157
BspPI GGATC 1 cut(s) 548
BsrI ACTGG 2 cut(s) 137, 811
BssECI CCNNGG 1 cut(s) 818
BssMI GATC 4 cut(s) 343, 476, 524, 540
BssNI GRCGYC 3 cut(s) 362, 382, 572
BssSI CACGAG 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 818
Bst2BI CACGAG 1 cut(s) 183
Bst2UI CCWGG 3 cut(s) 367, 387, 622
Bst4CI ACNGT 1 cut(s) 533
BstACI GRCGYC 3 cut(s) 362, 382, 572
BstC8I GCNNGC 3 cut(s) 174, 257, 736
BstDEI CTNAG 3 cut(s) 31, 677, 739
BstF5I GGATG 2 cut(s) 421, 706
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 346, 479, 527, 543
BstMAI GTCTC 3 cut(s) 34, 77, 277
BstMBI GATC 4 cut(s) 343, 476, 524, 540
BstMWI GCNNNNNNNGC 2 cut(s) 639, 731
BstNI CCWGG 3 cut(s) 367, 387, 622
BstSCI CCNGG 4 cut(s) 365, 385, 620, 717
BstV1I GCAGC 3 cut(s) 589, 604, 685
Bsu15I ATCGAT 1 cut(s) 523
BsuRI GGCC 4 cut(s) 259, 660, 810, 817
BsuTUI ATCGAT 1 cut(s) 523
BtsCI GGATG 2 cut(s) 421, 706
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 3 cut(s) 174, 257, 736
CciI TCATGA 1 cut(s) 157
CfoI GCGC 1 cut(s) 7
ClaI ATCGAT 1 cut(s) 523
CseI GACGC 2 cut(s) 351, 371
Csp6I GTAC 1 cut(s) 291
CviAII CATG 5 cut(s) 77, 125, 158, 332, 838
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 3 cut(s) 31, 677, 739
DpnI GATC 4 cut(s) 345, 478, 526, 542
DpnII GATC 4 cut(s) 343, 476, 524, 540
EaeI YGGCCR 1 cut(s) 658
Eco130I CCWWGG 1 cut(s) 818
Eco147I AGGCCT 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 549
EcoRII CCWGG 3 cut(s) 365, 385, 620
EcoT14I CCWWGG 1 cut(s) 818
ErhI CCWWGG 1 cut(s) 818
FaeI CATG 5 cut(s) 80, 128, 161, 335, 841
FatI CATG 5 cut(s) 76, 124, 157, 331, 837
FauI CCCGC 1 cut(s) 452
FauNDI CATATG 1 cut(s) 214
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 6 cut(s) 457, 511, 603, 618, 674, 723
FokI GGATG 2 cut(s) 428, 713
Fsp4HI GCNGC 6 cut(s) 457, 511, 603, 618, 674, 723
FspBI CTAG 4 cut(s) 261, 285, 819, 831
GlaI GCGC 1 cut(s) 6
GluI GCNGC 6 cut(s) 457, 511, 603, 618, 674, 723
GsuI CTGGAG 1 cut(s) 655
HaeIII GGCC 4 cut(s) 259, 660, 810, 817
HapII CCGG 2 cut(s) 576, 719
HgaI GACGC 2 cut(s) 351, 371
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 3 cut(s) 362, 382, 572
Hin1II CATG 5 cut(s) 80, 128, 161, 335, 841
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 801
HindII GTYRAC 1 cut(s) 801
HinfI GANTC 1 cut(s) 335
HpaII CCGG 2 cut(s) 576, 719
HphI GGTGA 3 cut(s) 209, 401, 509
Hpy166II GTNNAC 2 cut(s) 570, 801
Hpy188I TCNGA 3 cut(s) 529, 545, 669
Hpy188III TCNNGA 3 cut(s) 158, 185, 538
Hpy8I GTNNAC 2 cut(s) 570, 801
Hpy99I CGWCG 3 cut(s) 122, 477, 587
HpyAV CCTTC 2 cut(s) 245, 623
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4IV ACGT 3 cut(s) 60, 572, 585
HpyCH4V TGCA 3 cut(s) 57, 302, 673
HpyF10VI GCNNNNNNNGC 2 cut(s) 639, 731
HpyF3I CTNAG 3 cut(s) 31, 677, 739
HpySE526I ACGT 3 cut(s) 60, 572, 585
Hsp92I GRCGYC 3 cut(s) 362, 382, 572
Hsp92II CATG 5 cut(s) 80, 128, 161, 335, 841
HspAI GCGC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 4 cut(s) 343, 476, 524, 540
LmnI GCTCC 1 cut(s) 639
Lsp1109I GCAGC 3 cut(s) 589, 604, 685
LweI GCATC 3 cut(s) 588, 660, 753
MaeI CTAG 4 cut(s) 261, 285, 819, 831
MaeII ACGT 3 cut(s) 60, 572, 585
MaeIII GTNAC 2 cut(s) 207, 389
MalI GATC 4 cut(s) 345, 478, 526, 542
MboI GATC 4 cut(s) 343, 476, 524, 540
MboII GAAGA 2 cut(s) 80, 512
MlsI TGGCCA 1 cut(s) 660
MluCI AATT 2 cut(s) 225, 859
MluNI TGGCCA 1 cut(s) 660
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 6 cut(s) 58, 121, 442, 445, 630, 672
Mox20I TGGCCA 1 cut(s) 660
MscI TGGCCA 1 cut(s) 660
MseI TTAA 2 cut(s) 714, 744
MslI CAYNNNNRTG 1 cut(s) 239
Msp20I TGGCCA 1 cut(s) 660
MspA1I CMGCKG 3 cut(s) 341, 676, 774
MspI CCGG 2 cut(s) 576, 719
MspR9I CCNGG 4 cut(s) 367, 387, 622, 719
MvaI CCWGG 3 cut(s) 367, 387, 622
MwoI GCNNNNNNNGC 2 cut(s) 639, 731
NciI CCSGG 1 cut(s) 719
NdeI CATATG 1 cut(s) 214
NdeII GATC 4 cut(s) 343, 476, 524, 540
NlaIII CATG 5 cut(s) 80, 128, 161, 335, 841
NmuCI GTSAC 1 cut(s) 389
PagI TCATGA 1 cut(s) 157
PceI AGGCCT 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 529
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 6 cut(s) 458, 512, 604, 619, 675, 724
PsiI TTATAA 1 cut(s) 865
Psp6I CCWGG 3 cut(s) 365, 385, 620
PspGI CCWGG 3 cut(s) 365, 385, 620
PvuII CAGCTG 1 cut(s) 676
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 2 cut(s) 714, 744
SatI GCNGC 6 cut(s) 457, 511, 603, 618, 674, 723
Sau3AI GATC 4 cut(s) 343, 476, 524, 540
ScaI AGTACT 1 cut(s) 292
ScrFI CCNGG 4 cut(s) 367, 387, 622, 719
SfaNI GCATC 3 cut(s) 588, 660, 753
SmiMI CAYNNNNRTG 1 cut(s) 239
Sse9I AATT 2 cut(s) 225, 859
SseBI AGGCCT 1 cut(s) 259
SsiI CCGC 7 cut(s) 339, 456, 459, 510, 722, 753, 774
SspMI CTAG 4 cut(s) 261, 285, 819, 831
StuI AGGCCT 1 cut(s) 259
StyD4I CCNGG 4 cut(s) 365, 385, 620, 717
StyI CCWWGG 1 cut(s) 818
TaaI ACNGT 1 cut(s) 533
TaiI ACGT 3 cut(s) 63, 575, 588
TaqI TCGA 3 cut(s) 475, 523, 582
TasI AATT 2 cut(s) 225, 859
TatI WGTACW 1 cut(s) 290
TauI GCSGC 3 cut(s) 459, 513, 725
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 2 cut(s) 714, 744
Tru9I TTAA 2 cut(s) 714, 744
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 3 cut(s) 602, 617, 673
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 4 cut(s) 146, 206, 348, 826
TspRI CASTG 1 cut(s) 309
XmaJI CCTAGG 1 cut(s) 818
XspI CTAG 4 cut(s) 261, 285, 819, 831
ZraI GACGTC 1 cut(s) 573
ZrmI AGTACT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.