RLG00000014145

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0019822
Physical Location & Seq
Reverse (-)
48095801 .. 48096235
435 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014145

Sequence Viewer

Length: 336 bp
ATGCATGGTGAGATTAATTGTGATCGACATAGATACTGTAAGAGAACTTCCTCTAATCATGGCTACGTACTCTTACCAAATTATCATCCTCGTCGTGTGAAGTGGAGATTAAGGGCATTTTTAGCCTTAGTGGAGATTAAGGGCATTTTTAGCCTTGGCGACTTGCACTCCGATACAGGGGTTATTTTGCTGCATTTTCACACGGGATGCACGCAATCAAAAGACTCCGGTTTTACTTTCCTAGGGAGTCGAGTCGGTCGTGTCGACGGTTGCCTGATCGTGGATTTCTTGGGGTTTTACTTCTTCAGTGATCATTTAAATCTTCAGTGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.72

Weight (kDa)

8.95

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019822)

Species Orthologous Gene IDs
pyrus_communis pycom07g14220
rosa_chinensis RchiOBHm_Chr6g0265931
rosa_laevigata RLG00000014145
rosa_roxburghii Rroxscaffold_7G00202190
rosa_samantha Rh6BG143100 Rh6DG127400
rosa_wichuraiana Rw6G012360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 264
AcuI CTGAAG 2 cut(s) 289, 308
AfaI GTAC 1 cut(s) 69
AfiI CCNNNNNNNGG 2 cut(s) 177, 280
AluBI AGCT 1 cut(s) 333
AluI AGCT 1 cut(s) 333
ApeKI GCWGC 2 cut(s) 190, 330
AseI ATTAAT 1 cut(s) 15
AspA2I CCTAGG 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 20
AvrII CCTAGG 1 cut(s) 241
BaeI ACNNNNGTAYC 2 cut(s) 165, 198
BarI GAAGNNNNNNTAC 2 cut(s) 31, 63
BbvI GCAGC 1 cut(s) 177
BclI TGATCA 1 cut(s) 310
BfaI CTAG 1 cut(s) 242
BisI GCNGC 2 cut(s) 191, 331
BlnI CCTAGG 1 cut(s) 241
BlsI GCNGC 2 cut(s) 192, 332
BmsI GCATC 1 cut(s) 197
BsaAI YACGTR 1 cut(s) 67
BsaJI CCNNGG 2 cut(s) 154, 241
BsaWI WCCGGW 1 cut(s) 227
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 280
BseDI CCNNGG 2 cut(s) 154, 241
BseGI GGATG 2 cut(s) 85, 212
BseLI CCNNNNNNNGG 2 cut(s) 177, 280
BseXI GCAGC 1 cut(s) 177
Bsh1285I CGRYCG 1 cut(s) 259
BsiEI CGRYCG 1 cut(s) 259
BsiSI CCGG 1 cut(s) 228
BslI CCNNNNNNNGG 2 cut(s) 177, 280
Bsp143I GATC 3 cut(s) 22, 276, 310
BssECI CCNNGG 2 cut(s) 154, 241
BssMI GATC 3 cut(s) 22, 276, 310
BssT1I CCWWGG 2 cut(s) 154, 241
Bst4CI ACNGT 2 cut(s) 38, 269
BstBAI YACGTR 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 127
BstF5I GGATG 2 cut(s) 85, 212
BstKTI GATC 3 cut(s) 25, 279, 313
BstMBI GATC 3 cut(s) 22, 276, 310
BstMCI CGRYCG 1 cut(s) 259
BstMWI GCNNNNNNNGC 2 cut(s) 122, 150
BstSNI TACGTA 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 177
BtsCI GGATG 2 cut(s) 85, 212
BtsIMutI CAGTG 2 cut(s) 313, 332
Cac8I GCNNGC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 68
CviAII CATG 2 cut(s) 5, 59
CviJI RGCY 4 cut(s) 63, 125, 153, 333
CviKI_1 RGCY 4 cut(s) 63, 125, 153, 333
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 1 cut(s) 127
DpnI GATC 3 cut(s) 24, 278, 312
DpnII GATC 3 cut(s) 22, 276, 310
DraI TTTAAA 1 cut(s) 318
Eco105I TACGTA 1 cut(s) 67
Eco130I CCWWGG 2 cut(s) 154, 241
Eco57I CTGAAG 2 cut(s) 289, 308
EcoT14I CCWWGG 2 cut(s) 154, 241
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 154, 241
FaeI CATG 2 cut(s) 8, 62
FaiI YATR 3 cut(s) 6, 30, 60
FatI CATG 2 cut(s) 4, 58
FbaI TGATCA 1 cut(s) 310
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 191, 331
FokI GGATG 2 cut(s) 72, 219
Fsp4HI GCNGC 2 cut(s) 191, 331
FspBI CTAG 1 cut(s) 242
GluI GCNGC 2 cut(s) 191, 331
HapII CCGG 1 cut(s) 228
Hin1II CATG 2 cut(s) 8, 62
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 3 cut(s) 224, 247, 252
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 265
Hpy99I CGWCG 2 cut(s) 96, 269
HpyCH4III ACNGT 2 cut(s) 38, 269
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 5 cut(s) 4, 166, 193, 210, 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 150
HpyF3I CTNAG 1 cut(s) 127
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 2 cut(s) 8, 62
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 3 cut(s) 22, 276, 310
LpnPI CCDG 3 cut(s) 162, 241, 287
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 1 cut(s) 197
MaeI CTAG 1 cut(s) 242
MaeII ACGT 1 cut(s) 66
MalI GATC 3 cut(s) 24, 278, 312
MboI GATC 3 cut(s) 22, 276, 310
MboII GAAGA 2 cut(s) 295, 314
MluCI AATT 2 cut(s) 16, 79
MlyI GAGTC 3 cut(s) 218, 256, 261
MnlI CCTC 2 cut(s) 61, 99
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 4 cut(s) 15, 110, 138, 317
MspA1I CMGCKG 1 cut(s) 333
MspI CCGG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 122, 150
NdeII GATC 3 cut(s) 22, 276, 310
NlaIII CATG 2 cut(s) 8, 62
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 2 cut(s) 256, 261
PkrI GCNGC 2 cut(s) 192, 332
PleI GAGTC 3 cut(s) 218, 255, 260
PpsI GAGTC 3 cut(s) 218, 255, 260
Ppu21I YACGTR 1 cut(s) 67
PshBI ATTAAT 1 cut(s) 15
PvuII CAGCTG 1 cut(s) 333
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
SalI GTCGAC 1 cut(s) 263
SaqAI TTAA 4 cut(s) 15, 110, 138, 317
SatI GCNGC 2 cut(s) 191, 331
Sau3AI GATC 3 cut(s) 22, 276, 310
SchI GAGTC 3 cut(s) 218, 256, 261
SetI ASST 2 cut(s) 69, 335
SfaNI GCATC 1 cut(s) 197
SmiI ATTTAAAT 1 cut(s) 318
SnaBI TACGTA 1 cut(s) 67
Sse9I AATT 2 cut(s) 16, 79
SspMI CTAG 1 cut(s) 242
StyI CCWWGG 2 cut(s) 154, 241
SwaI ATTTAAAT 1 cut(s) 318
TaaI ACNGT 2 cut(s) 38, 269
TaiI ACGT 1 cut(s) 69
TaqI TCGA 3 cut(s) 25, 250, 264
TaqII GACCGA 1 cut(s) 245
TasI AATT 2 cut(s) 16, 79
Tru1I TTAA 4 cut(s) 15, 110, 138, 317
Tru9I TTAA 4 cut(s) 15, 110, 138, 317
TscAI CASTG 2 cut(s) 313, 332
TseI GCWGC 2 cut(s) 190, 330
TspRI CASTG 2 cut(s) 313, 332
VspI ATTAAT 1 cut(s) 15
XmaJI CCTAGG 1 cut(s) 241
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 1 cut(s) 242
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.