Rh6DG127400

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
17978051 .. 17980555
2505 bp
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UTR
Exon/CDS
Intron
Rh6DG127400.1

Sequence Viewer

Length: 480 bp
ATGTTTGACAGATTCCAGTATTGGGGATGCACGCAATCAAAAGACTCCGGTTTTACTTTCCTAGGGAGTCGAGCCGGTCGTGTCGACGGTCGCCTGATCGTGGATTTCTTGGCTGATGGTCTTGGCTTCCCATTTCTGCCGTCGGTTCACTTCGATTTCAGATATGGCGCAAACTTTTCAACAATGGGATCAGCTGTTCTCGTGCCAAACAGTATCTCTGCACCAGTAAACCCCCCAACCACAAGCCTACTCACTCCAGACTTTCAGCTCGGACAGTTCAAGGCTTCCCAAAACCGAGTGCTTCATCAATTGCAATACAATAATTCCACCCAGCTGGATCTAAACCATGTGAGAGGGAGAGACTTCCTTCTGGCGACATCTTTGGGAAAACATTGTACTTGGTTTACATCTGTCCATCAGTATGATTTCACTTTCACTCCTCGGTTTCCAGATATAGTCAGAGACACAGAAACGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

159

Amino Acids

17.98

Weight (kDa)

7.85

Isoelectric Point (pI)

20.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019822)

Species Orthologous Gene IDs
pyrus_communis pycom07g14220
rosa_chinensis RchiOBHm_Chr6g0265931
rosa_laevigata RLG00000014145
rosa_roxburghii Rroxscaffold_7G00202190
rosa_samantha Rh6BG143100 Rh6DG127400
rosa_wichuraiana Rw6G012360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 84
AclWI GGATC 2 cut(s) 196, 345
AfaI GTAC 1 cut(s) 397
AfiI CCNNNNNNNGG 2 cut(s) 22, 100
AgsI TTSAA 2 cut(s) 180, 280
AloI GAACNNNNNNTCC 2 cut(s) 180, 212
AluBI AGCT 3 cut(s) 194, 268, 334
AluI AGCT 3 cut(s) 194, 268, 334
Alw26I GTCTC 2 cut(s) 354, 456
AlwI GGATC 2 cut(s) 196, 345
AspA2I CCTAGG 1 cut(s) 61
AspLEI GCGC 1 cut(s) 170
AvrII CCTAGG 1 cut(s) 61
BauI CACGAG 1 cut(s) 200
BccI CCATC 2 cut(s) 110, 423
BceAI ACGGC 1 cut(s) 124
BcoDI GTCTC 2 cut(s) 354, 456
BfaI CTAG 1 cut(s) 62
BlnI CCTAGG 1 cut(s) 61
BmsI GCATC 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 240
BsaJI CCNNGG 2 cut(s) 61, 440
BsaWI WCCGGW 1 cut(s) 47
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 100
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 2 cut(s) 16, 224
BseDI CCNNGG 2 cut(s) 61, 440
BseGI GGATG 1 cut(s) 32
BseLI CCNNNNNNNGG 2 cut(s) 22, 100
BseNI ACTGG 2 cut(s) 16, 224
BseRI GAGGAG 1 cut(s) 429
BseYI CCCAGC 1 cut(s) 330
BsgI GTGCAG 1 cut(s) 204
Bsh1285I CGRYCG 2 cut(s) 79, 91
BsiEI CGRYCG 2 cut(s) 79, 91
BsiSI CCGG 2 cut(s) 48, 75
BslI CCNNNNNNNGG 2 cut(s) 22, 100
BsmAI GTCTC 2 cut(s) 354, 456
Bsp143I GATC 3 cut(s) 96, 188, 337
BspPI GGATC 2 cut(s) 196, 345
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 2 cut(s) 16, 224
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 61, 440
BssMI GATC 3 cut(s) 96, 188, 337
BssSI CACGAG 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 61
Bst2BI CACGAG 1 cut(s) 200
Bst4CI ACNGT 3 cut(s) 89, 212, 276
BstC8I GCNNGC 1 cut(s) 32
BstF5I GGATG 1 cut(s) 32
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 3 cut(s) 99, 191, 340
BstMAI GTCTC 2 cut(s) 354, 456
BstMBI GATC 3 cut(s) 96, 188, 337
BstMCI CGRYCG 2 cut(s) 79, 91
BstX2I RGATCY 1 cut(s) 337
BstXI CCANNNNNNTGG 1 cut(s) 334
BstYI RGATCY 1 cut(s) 337
BtsCI GGATG 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 32
CfoI GCGC 1 cut(s) 170
Cfr10I RCCGGY 1 cut(s) 74
Csp6I GTAC 1 cut(s) 396
CviAII CATG 1 cut(s) 347
CviJI RGCY 8 cut(s) 74, 113, 126, 194, 246, 268, 284, 334
CviKI_1 RGCY 8 cut(s) 74, 113, 126, 194, 246, 268, 284, 334
CviQI GTAC 1 cut(s) 396
DpnI GATC 3 cut(s) 98, 190, 339
DpnII GATC 3 cut(s) 96, 188, 337
Eco130I CCWWGG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 1 cut(s) 350
FaiI YATR 4 cut(s) 165, 348, 423, 455
FatI CATG 1 cut(s) 346
FblI GTMKAC 1 cut(s) 84
FokI GGATG 1 cut(s) 39
FspBI CTAG 1 cut(s) 62
GlaI GCGC 1 cut(s) 169
GsaI CCCAGC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 240
HapII CCGG 2 cut(s) 48, 75
HhaI GCGC 1 cut(s) 170
Hin1II CATG 1 cut(s) 350
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 3 cut(s) 12, 44, 67
HpaII CCGG 2 cut(s) 48, 75
Hpy166II GTNNAC 4 cut(s) 85, 148, 229, 405
Hpy188I TCNGA 3 cut(s) 161, 272, 461
Hpy188III TCNNGA 2 cut(s) 257, 449
Hpy8I GTNNAC 4 cut(s) 85, 148, 229, 405
Hpy99I CGWCG 2 cut(s) 89, 145
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 3 cut(s) 89, 212, 276
HpyCH4V TGCA 3 cut(s) 30, 221, 313
Hsp92II CATG 1 cut(s) 350
HspAI GCGC 1 cut(s) 168
Kzo9I GATC 3 cut(s) 96, 188, 337
LweI GCATC 1 cut(s) 17
MaeI CTAG 1 cut(s) 62
MalI GATC 3 cut(s) 98, 190, 339
MboI GATC 3 cut(s) 96, 188, 337
MfeI CAATTG 1 cut(s) 308
MflI RGATCY 1 cut(s) 337
MluCI AATT 2 cut(s) 308, 322
MlyI GAGTC 2 cut(s) 38, 76
MnlI CCTC 2 cut(s) 347, 450
MslI CAYNNNNRTG 1 cut(s) 420
MspA1I CMGCKG 2 cut(s) 194, 334
MspI CCGG 2 cut(s) 48, 75
MunI CAATTG 1 cut(s) 308
NdeII GATC 3 cut(s) 96, 188, 337
NlaIII CATG 1 cut(s) 350
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PfeI GAWTC 1 cut(s) 12
PleI GAGTC 2 cut(s) 38, 75
PpsI GAGTC 2 cut(s) 38, 75
PspFI CCCAGC 1 cut(s) 330
PsuI RGATCY 1 cut(s) 337
PvuII CAGCTG 2 cut(s) 194, 334
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
RseI CAYNNNNRTG 1 cut(s) 420
SalI GTCGAC 1 cut(s) 83
Sau3AI GATC 3 cut(s) 96, 188, 337
SchI GAGTC 2 cut(s) 38, 76
SetI ASST 3 cut(s) 196, 270, 336
SfaNI GCATC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 420
Sse9I AATT 2 cut(s) 308, 322
SspMI CTAG 1 cut(s) 62
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 3 cut(s) 89, 212, 276
TaqI TCGA 3 cut(s) 70, 84, 153
TasI AATT 2 cut(s) 308, 322
TatI WGTACW 1 cut(s) 395
TfiI GAWTC 1 cut(s) 12
TspDTI ATGAA 1 cut(s) 293
XmaJI CCTAGG 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.