Rh6BG143100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
22925241 .. 22934955
9715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG143100.1

Sequence Viewer

Length: 333 bp
ATGACTGCAGCTGATGGTCTTGGCTTCCCATTTCTGCCGTCGGTTCACTTCGATTTCAGATATGGCGCAAACTTTTCAACAATGGGATCAGCTGTTCTCGTGCCAAACAGTATCTCTGCACCAGTAAACCCCCCAACCACAAGCCTACTCACTCCAGACTTTCAGCTCGGACAGTTCAAGGCTTCCCAAAACCGAGTGCTTCATCAATTGCAATACAATAATTCCACCCAGCTGGTGAGGCTCCTCTGCTTTGCTCAATACCATTCAAAATTCAACCTCTCATGGTTTTCGTTTTTGATTTGCAACTGTGGGGAAACCATAAACATGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.28

Weight (kDa)

7.79

Isoelectric Point (pI)

23.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019822)

Species Orthologous Gene IDs
pyrus_communis pycom07g14220
rosa_chinensis RchiOBHm_Chr6g0265931
rosa_laevigata RLG00000014145
rosa_roxburghii Rroxscaffold_7G00202190
rosa_samantha Rh6BG143100 Rh6DG127400
rosa_wichuraiana Rw6G012360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 94
AcsI RAATTY 1 cut(s) 269
AgsI TTSAA 4 cut(s) 78, 178, 267, 274
AloI GAACNNNNNNTCC 2 cut(s) 78, 110
AluBI AGCT 4 cut(s) 11, 92, 166, 232
AluI AGCT 4 cut(s) 11, 92, 166, 232
AlwI GGATC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 269
AspLEI GCGC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 247
BauI CACGAG 1 cut(s) 98
BbvI GCAGC 1 cut(s) 20
BccI CCATC 1 cut(s) 8
BceAI ACGGC 1 cut(s) 22
BfaI CTAG 1 cut(s) 331
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 242
BpmI CTGGAG 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 20
BseYI CCCAGC 1 cut(s) 228
BsgI GTGCAG 1 cut(s) 102
Bsp143I GATC 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 242
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 1 cut(s) 94
BsrI ACTGG 1 cut(s) 122
BssMI GATC 1 cut(s) 86
BssSI CACGAG 1 cut(s) 98
Bst2BI CACGAG 1 cut(s) 98
Bst4CI ACNGT 3 cut(s) 110, 174, 308
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 1 cut(s) 89
BstMBI GATC 1 cut(s) 86
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstNSI RCATGY 1 cut(s) 328
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 20
BstXI CCANNNNNNTGG 1 cut(s) 232
CfoI GCGC 1 cut(s) 68
CviAII CATG 2 cut(s) 282, 325
CviJI RGCY 8 cut(s) 11, 24, 92, 144, 166, 182, 232, 241
CviKI_1 RGCY 8 cut(s) 11, 24, 92, 144, 166, 182, 232, 241
DpnI GATC 1 cut(s) 88
DpnII GATC 1 cut(s) 86
FaeI CATG 2 cut(s) 285, 328
FaiI YATR 4 cut(s) 63, 283, 320, 326
FatI CATG 2 cut(s) 281, 324
Fnu4HI GCNGC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 9
FspBI CTAG 1 cut(s) 331
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 9
GsaI CCCAGC 1 cut(s) 232
GsuI CTGGAG 1 cut(s) 138
HhaI GCGC 1 cut(s) 68
Hin1II CATG 2 cut(s) 285, 328
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 46, 127
Hpy188I TCNGA 2 cut(s) 59, 170
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 2 cut(s) 46, 127
Hpy99I CGWCG 1 cut(s) 43
HpyCH4III ACNGT 3 cut(s) 110, 174, 308
HpyCH4V TGCA 5 cut(s) 8, 119, 211, 303, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
Hsp92II CATG 2 cut(s) 285, 328
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 1 cut(s) 86
LmnI GCTCC 1 cut(s) 246
LpnPI CCDG 4 cut(s) 135, 168, 218, 242
Lsp1109I GCAGC 1 cut(s) 20
MaeI CTAG 1 cut(s) 331
MalI GATC 1 cut(s) 88
MboI GATC 1 cut(s) 86
MfeI CAATTG 1 cut(s) 206
MluCI AATT 3 cut(s) 206, 220, 269
MnlI CCTC 3 cut(s) 231, 254, 287
MslI CAYNNNNRTG 1 cut(s) 323
MspA1I CMGCKG 3 cut(s) 11, 92, 232
MunI CAATTG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 238
NdeII GATC 1 cut(s) 86
NlaIII CATG 2 cut(s) 285, 328
NlaIV GGNNCC 1 cut(s) 242
NspI RCATGY 1 cut(s) 328
PkrI GCNGC 1 cut(s) 10
PspFI CCCAGC 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 242
PstI CTGCAG 1 cut(s) 10
PvuII CAGCTG 3 cut(s) 11, 92, 232
RseI CAYNNNNRTG 1 cut(s) 323
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 1 cut(s) 86
SetI ASST 5 cut(s) 13, 94, 168, 234, 279
SfcI CTRYAG 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 3 cut(s) 206, 220, 269
SspMI CTAG 1 cut(s) 331
TaaI ACNGT 3 cut(s) 110, 174, 308
TaqI TCGA 1 cut(s) 51
TasI AATT 3 cut(s) 206, 220, 269
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 191
XapI RAATTY 1 cut(s) 269
XceI RCATGY 1 cut(s) 328
XspI CTAG 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.