Rw6G012360

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0019822
Physical Location & Seq
Forward (+)
22490438 .. 22491679
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G012360.1

Sequence Viewer

Length: 351 bp
ATGCACGCAATCAAAGACTCCGGTTTTACTTTCCTAGGGAGTCGAGCCGGTCGTGTCGACGGTCGCCTGATCGTGGATTTCTTGGCTGATGGTCTTGGCTTCCCATTTCTGCCGTCGGTTCACTTCGATTTCAGATATGGCGCAAACTTTGCAACAATGGGATCAGCTGTTCTCGTGCCAAACAGATCTAAACCATGTGAGAGGGAGAGACTTCCTTCTGGCGACATCTTTGGGAAAACATTGTACTTGGTTTACATCTTTCGATCAGAGCTGTATGCTCTAGAAGGGCGTCTGTTTATGGTTATGAACCTAGATCGATCCGCTGGGATTGTTCTCCATAAGTTCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

116

Amino Acids

13.08

Weight (kDa)

9.3

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019822)

Species Orthologous Gene IDs
pyrus_communis pycom07g14220
rosa_chinensis RchiOBHm_Chr6g0265931
rosa_laevigata RLG00000014145
rosa_roxburghii Rroxscaffold_7G00202190
rosa_samantha Rh6BG143100 Rh6DG127400
rosa_wichuraiana Rw6G012360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 57
AciI CCGC 1 cut(s) 321
AclWI GGATC 2 cut(s) 169, 312
AcyI GRCGYC 1 cut(s) 289
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 73
AloI GAACNNNNNNTCC 2 cut(s) 153, 185
AluBI AGCT 2 cut(s) 167, 271
AluI AGCT 2 cut(s) 167, 271
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 2 cut(s) 169, 312
AspA2I CCTAGG 1 cut(s) 34
AspLEI GCGC 1 cut(s) 143
AvrII CCTAGG 1 cut(s) 34
BauI CACGAG 1 cut(s) 173
BccI CCATC 1 cut(s) 83
BceAI ACGGC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 3 cut(s) 35, 281, 311
BglII AGATCT 1 cut(s) 185
BlnI CCTAGG 1 cut(s) 34
Bsa29I ATCGAT 1 cut(s) 316
BsaHI GRCGYC 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 34
BsaWI WCCGGW 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse118I RCCGGY 1 cut(s) 47
BseCI ATCGAT 1 cut(s) 316
BseDI CCNNGG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 73
BseYI CCCAGC 1 cut(s) 323
Bsh1285I CGRYCG 2 cut(s) 52, 64
BshVI ATCGAT 1 cut(s) 316
BsiEI CGRYCG 2 cut(s) 52, 64
BsiSI CCGG 2 cut(s) 21, 48
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 202
Bsp143I GATC 6 cut(s) 69, 161, 185, 263, 313, 317
BspACI CCGC 1 cut(s) 321
BspDI ATCGAT 1 cut(s) 316
BspPI GGATC 2 cut(s) 169, 312
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 6 cut(s) 69, 161, 185, 263, 313, 317
BssNI GRCGYC 1 cut(s) 289
BssSI CACGAG 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 34
Bst2BI CACGAG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 289
BstAPI GCANNNNNTGC 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 6
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 6 cut(s) 72, 164, 188, 266, 316, 320
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 6 cut(s) 69, 161, 185, 263, 313, 317
BstMCI CGRYCG 2 cut(s) 52, 64
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
Bsu15I ATCGAT 1 cut(s) 316
BsuTUI ATCGAT 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 47
ClaI ATCGAT 1 cut(s) 316
CseI GACGC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 244
CviAII CATG 1 cut(s) 195
CviJI RGCY 5 cut(s) 47, 86, 99, 167, 271
CviKI_1 RGCY 5 cut(s) 47, 86, 99, 167, 271
CviQI GTAC 1 cut(s) 244
DpnI GATC 6 cut(s) 71, 163, 187, 265, 315, 319
DpnII GATC 6 cut(s) 69, 161, 185, 263, 313, 317
Eco130I CCWWGG 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 1 cut(s) 198
FaiI YATR 6 cut(s) 138, 196, 276, 299, 305, 339
FatI CATG 1 cut(s) 194
FblI GTMKAC 1 cut(s) 57
FspBI CTAG 3 cut(s) 35, 281, 311
GlaI GCGC 1 cut(s) 142
GsaI CCCAGC 1 cut(s) 327
HapII CCGG 2 cut(s) 21, 48
HgaI GACGC 1 cut(s) 278
HhaI GCGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 289
Hin1II CATG 1 cut(s) 198
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 2 cut(s) 17, 40
HpaII CCGG 2 cut(s) 21, 48
Hpy166II GTNNAC 3 cut(s) 58, 121, 253
Hpy188I TCNGA 2 cut(s) 134, 268
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 3 cut(s) 58, 121, 253
Hpy99I CGWCG 2 cut(s) 62, 118
HpyAV CCTTC 2 cut(s) 225, 278
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 2 cut(s) 4, 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
Hsp92I GRCGYC 1 cut(s) 289
Hsp92II CATG 1 cut(s) 198
HspAI GCGC 1 cut(s) 141
Kzo9I GATC 6 cut(s) 69, 161, 185, 263, 313, 317
LpnPI CCDG 6 cut(s) 34, 61, 80, 204, 309, 331
MaeI CTAG 3 cut(s) 35, 281, 311
MalI GATC 6 cut(s) 71, 163, 187, 265, 315, 319
MboI GATC 6 cut(s) 69, 161, 185, 263, 313, 317
MflI RGATCY 1 cut(s) 185
MlyI GAGTC 2 cut(s) 11, 49
MnlI CCTC 1 cut(s) 195
MspA1I CMGCKG 2 cut(s) 167, 323
MspI CCGG 2 cut(s) 21, 48
MwoI GCNNNNNNNGC 1 cut(s) 149
NdeII GATC 6 cut(s) 69, 161, 185, 263, 313, 317
NlaIII CATG 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 49
PleI GAGTC 2 cut(s) 11, 48
PpsI GAGTC 2 cut(s) 11, 48
PspFI CCCAGC 1 cut(s) 323
PsuI RGATCY 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SalI GTCGAC 1 cut(s) 56
Sau3AI GATC 6 cut(s) 69, 161, 185, 263, 313, 317
SchI GAGTC 2 cut(s) 11, 49
SetI ASST 3 cut(s) 169, 273, 312
SsiI CCGC 1 cut(s) 321
SspMI CTAG 3 cut(s) 35, 281, 311
StyI CCWWGG 1 cut(s) 34
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 5 cut(s) 43, 57, 126, 262, 316
TatI WGTACW 1 cut(s) 243
TspDTI ATGAA 1 cut(s) 320
XbaI TCTAGA 1 cut(s) 280
XmaJI CCTAGG 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 57
XspI CTAG 3 cut(s) 35, 281, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.