Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0019060

Physical Location & Seq

Genomic Coordinates Reverse (-)

61661411 .. 61662558

Gene Structure 1148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015098

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGATGGAGAAGGTGGAAGCATCAAGGAATGGGTGAGATGCAATACGAGCTTAAAAGATTCGTATGTAAATGATGTTTCTTCTACCATTATTTATCACAAGAATTTGATACGAAAAGGCTATAGAGTTCTAATTTACAGTGGAGATGTTGATATGGCTATTCCATATGTGGGTACTTTTGCTTGGATAGAATCTCTAAACTTGACTATTGATGAGATTTCATGGAAACCTTGGTTCGTCAATGCACAAGTTGCAGGGTTCCGCAACGGCCTGAGGATCCACGACAACCCTGCTCTCGAGCACACCTTCAAGGCTTCCAATTTCCTCTACCCGGTCTTCTTCATCGATCAGCACTGCATGAATCCTGACCCGAAAGCACCCTCACTCGGGTCCTCTAAGGCACTGCCTGAACCGAATCTGGTTCCTGCTCCAGAGTCTGGTGGATTTGGATTTGAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

154

Amino Acids

17.1

Weight (kDa)

5.49

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	7 - 88	3.9e-16	Serine carboxypeptidase
DNA_photolyase	PF00875	87 - 119	1.2e-06	DNA photolyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019060)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015098
rosa_multiflora	Rmu_sc0001368.1_g000008 Rmu_sc0001374.1_g000030 Rmu_sc0005571.1_g000024
rosa_roxburghii	Rroxscaffold_3G00222750 Rroxscaffold_3G00231090
rosa_samantha	Rh1DG151500 Rh4CG237600 Rh5DG504200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	437
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	2 cut(s)	271, 284
AcsI	RAATTY	1 cut(s)	103
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	5 cut(s)	170, 331, 386, 387, 437
AgsI	TTSAA	2 cut(s)	310, 455
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
Alw21I	GWGCWC	1 cut(s)	303
AlwI	GGATC	2 cut(s)	271, 284
AlwNI	CAGNNNCTG	1 cut(s)	437
Ama87I	CYCGRG	2 cut(s)	296, 386
AoxI	GGCC	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	390
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	46
AvaI	CYCGRG	2 cut(s)	296, 386
AvaII	GGWCC	1 cut(s)	390
AxyI	CCTNAGG	1 cut(s)	272
BamHI	GGATCC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	303
BceAI	ACGGC	1 cut(s)	283
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BcnI	CCSGG	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	1 cut(s)	390
BmeT110I	CYCGRG	2 cut(s)	296, 386
BmgT120I	GGNCC	1 cut(s)	390
BmiI	GGNNCC	4 cut(s)	260, 278, 391, 423
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	2 cut(s)	29, 30
BpiI	GAAGAC	1 cut(s)	328
BpmI	CTGGAG	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	332
Bsa29I	ATCGAT	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	5 cut(s)	170, 331, 386, 387, 437
Bse21I	CCTNAGG	1 cut(s)	272
BseCI	ATCGAT	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	5 cut(s)	170, 331, 386, 387, 437
BseMII	CTCAG	1 cut(s)	263
BshFI	GGCC	1 cut(s)	270
BshVI	ATCGAT	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	303
BsiHKCI	CYCGRG	2 cut(s)	296, 386
BsiSI	CCGG	1 cut(s)	332
BslI	CCNNNNNNNGG	5 cut(s)	170, 331, 386, 387, 437
BsnI	GGCC	1 cut(s)	270
BsoBI	CYCGRG	2 cut(s)	296, 386
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	276, 346
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	1 cut(s)	264
BspDI	ATCGAT	1 cut(s)	345
BspLI	GGNNCC	4 cut(s)	260, 278, 391, 423
BspPI	GGATC	2 cut(s)	271, 284
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	2 cut(s)	276, 346
BssT1I	CCWWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	140
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstDEI	CTNAG	2 cut(s)	272, 396
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	279, 349
BstMBI	GATC	2 cut(s)	276, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 251
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
Bsu15I	ATCGAT	1 cut(s)	345
Bsu36I	CCTNAGG	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	270
BsuTUI	ATCGAT	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	2 cut(s)	352, 401
BtsIMutI	CAGTG	3 cut(s)	145, 352, 401
CaiI	CAGNNNCTG	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	390
ClaI	ATCGAT	1 cut(s)	345
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	2 cut(s)	222, 358
CviJI	RGCY	5 cut(s)	51, 120, 158, 270, 314
CviKI_1	RGCY	5 cut(s)	51, 120, 158, 270, 314
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	2 cut(s)	272, 396
DpnI	GATC	2 cut(s)	278, 348
DpnII	GATC	2 cut(s)	276, 346
Eco130I	CCWWGG	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	390
Eco81I	CCTNAGG	1 cut(s)	272
Eco88I	CYCGRG	2 cut(s)	296, 386
EcoO109I	RGGNCCY	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	2 cut(s)	225, 361
FaiI	YATR	7 cut(s)	66, 123, 155, 166, 168, 223, 359
FatI	CATG	2 cut(s)	221, 357
FauNDI	CATATG	1 cut(s)	166
FokI	GGATG	1 cut(s)	17
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	2 cut(s)	225, 361
HinfI	GANTC	5 cut(s)	59, 191, 361, 415, 434
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	1 cut(s)	46
Hpy188III	TCNNGA	3 cut(s)	296, 365, 431
HpyAV	CCTTC	2 cut(s)	5, 316
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	4 cut(s)	42, 245, 254, 357
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 251
HpyF3I	CTNAG	2 cut(s)	272, 396
Hsp92II	CATG	2 cut(s)	225, 361
Kzo9I	GATC	2 cut(s)	276, 346
LmnI	GCTCC	1 cut(s)	433
LweI	GCATC	2 cut(s)	29, 30
MalI	GATC	2 cut(s)	278, 348
MboI	GATC	2 cut(s)	276, 346
MboII	GAAGA	3 cut(s)	72, 328, 331
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	3 cut(s)	103, 132, 319
MlyI	GAGTC	1 cut(s)	443
MnlI	CCTC	4 cut(s)	267, 335, 391, 403
MseI	TTAA	2 cut(s)	53, 460
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	2 cut(s)	48, 251
NciI	CCSGG	1 cut(s)	332
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	2 cut(s)	276, 346
NlaIII	CATG	2 cut(s)	225, 361
NlaIV	GGNNCC	4 cut(s)	260, 278, 391, 423
PaeR7I	CTCGAG	1 cut(s)	296
PfeI	GAWTC	4 cut(s)	59, 191, 361, 415
PflMI	CCANNNNNTGG	1 cut(s)	437
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PpuMI	RGGWCCY	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	390
PspN4I	GGNNCC	4 cut(s)	260, 278, 391, 423
PspPI	GGNCC	1 cut(s)	390
PspPPI	RGGWCCY	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	276
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	53, 460
Sau3AI	GATC	2 cut(s)	276, 346
Sau96I	GGNCC	1 cut(s)	390
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	5 cut(s)	16, 53, 232, 308, 460
SfaNI	GCATC	2 cut(s)	29, 30
SfcI	CTRYAG	1 cut(s)	121
Sfr274I	CTCGAG	1 cut(s)	296
SinI	GGWCC	1 cut(s)	390
SlaI	CTCGAG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	3 cut(s)	103, 132, 319
SsiI	CCGC	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	140
TaqI	TCGA	2 cut(s)	297, 345
TasI	AATT	3 cut(s)	103, 132, 319
TfiI	GAWTC	4 cut(s)	59, 191, 361, 415
Tru1I	TTAA	2 cut(s)	53, 460
Tru9I	TTAA	2 cut(s)	53, 460
TscAI	CASTG	3 cut(s)	145, 359, 408
TspDTI	ATGAA	3 cut(s)	210, 331, 374
TspRI	CASTG	3 cut(s)	145, 359, 408
Van91I	CCANNNNNTGG	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	390
XapI	RAATTY	1 cut(s)	103
XhoI	CTCGAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.