Rh4CG237600

FAD binding domain of DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0019060
Physical Location & Seq
Reverse (-)
48214418 .. 48217167
2750 bp
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UTR
Exon/CDS
Intron
Rh4CG237600.1

Sequence Viewer

Length: 249 bp
ATGCTCCTCCGTTTGGATGCGATTGTGGAGCACGACCTCGCCCAGTCTCGTGGCGACCCCAGCGAGGTCATCGTTCGTTGCCTAAAGGAGTGGGATGTGAAAAAGCTTTGCTTTGAGTATGACACCGAACCATATTACCAAGCTCTAGATGTTAAAGTCAGGGATCCTCTAATGGTATTGACAGTGAAATGGGCTTTCCAGCTTGCTTATGGCAAACTGCCCGGAGAGATTCGGTTGGTCAGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003913 GO:0003914 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0016829 GO:0016830 GO:0050896 GO:0140097
KEGG Pathways
Metabolic & Signaling
ko04710 map04710
Pfam Domains
Protein Families
DNA_photolyase FAD_binding_7

Protein Analysis

82

Amino Acids

9.54

Weight (kDa)

5.28

Isoelectric Point (pI)

23.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 12 - 57 2.9e-06 DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 158, 171
AfiI CCNNNNNNNGG 2 cut(s) 13, 64
AluBI AGCT 3 cut(s) 106, 143, 202
AluI AGCT 3 cut(s) 106, 143, 202
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 51
AlwI GGATC 2 cut(s) 158, 171
AsuC2I CCSGG 1 cut(s) 222
BamHI GGATCC 1 cut(s) 163
BauI CACGAG 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 33
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 51
BfaI CTAG 1 cut(s) 146
Bme1390I CCNGG 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 222
BmrI ACTGGG 1 cut(s) 37
BmsI GCATC 1 cut(s) 7
BmuI ACTGGG 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 64
Bse1I ACTGG 1 cut(s) 43
BseGI GGATG 2 cut(s) 22, 100
BseLI CCNNNNNNNGG 2 cut(s) 13, 64
BseNI ACTGG 1 cut(s) 43
BseYI CCCAGC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 222
BslI CCNNNNNNNGG 2 cut(s) 13, 64
BsmAI GTCTC 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 165
BspPI GGATC 2 cut(s) 158, 171
BsrI ACTGG 1 cut(s) 43
BssMI GATC 1 cut(s) 163
BssSI CACGAG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 204
BstF5I GGATG 2 cut(s) 22, 100
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 163
BstXI CCANNNNNNTGG 1 cut(s) 50
BstYI RGATCY 1 cut(s) 163
BtsCI GGATG 2 cut(s) 22, 100
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 204
CviJI RGCY 4 cut(s) 106, 143, 194, 202
CviKI_1 RGCY 4 cut(s) 106, 143, 194, 202
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
FaiI YATR 4 cut(s) 120, 133, 210, 247
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FokI GGATG 2 cut(s) 29, 107
FspBI CTAG 1 cut(s) 146
GsaI CCCAGC 1 cut(s) 63
HapII CCGG 1 cut(s) 222
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 1 cut(s) 229
HpaII CCGG 1 cut(s) 222
Hpy188III TCNNGA 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 2 cut(s) 9, 28
LpnPI CCDG 5 cut(s) 56, 73, 145, 212, 235
LweI GCATC 1 cut(s) 7
MaeI CTAG 1 cut(s) 146
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 33
MnlI CCTC 4 cut(s) 17, 47, 58, 177
MseI TTAA 1 cut(s) 153
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 60
NciI CCSGG 1 cut(s) 222
NdeII GATC 1 cut(s) 163
NlaIV GGNNCC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 229
PspFI CCCAGC 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 165
PsuI RGATCY 1 cut(s) 163
SaqAI TTAA 1 cut(s) 153
Sau3AI GATC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 1 cut(s) 33
SetI ASST 5 cut(s) 39, 69, 108, 145, 204
SfaNI GCATC 1 cut(s) 7
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 184
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 189
TspRI CASTG 1 cut(s) 189
XbaI TCTAGA 1 cut(s) 145
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.