Rh1DG151500

FAD binding domain of DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0019060
Physical Location & Seq
Forward (+)
31672931 .. 31673463
533 bp
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UTR
Exon/CDS
Intron
Rh1DG151500.1

Sequence Viewer

Length: 276 bp
ATGAATCCCGACCCGAACGCACCCTCGACCAGGTCCTCCAAGGCCGGCCTGAACCGAATCTGGTTCCTGATTCAGAGTCTGGTGGATTTGGATTTGAACCTTAAGAAGCTTGGGTCCAGATTGTTGGTGCTTAAAGGCGAACCCAGTGAGGTCATCGTTCGTTGCCTTAAGGAGTGGGATGTGAAAAAACTTTGCTTTGAGTATGACACCGAACCATATTACCAAGCTCTAGATGTTAAAGTCAAGGTATGCAGCTTTACATTTTTATTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003913 GO:0003914 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0016829 GO:0016830 GO:0050896 GO:0140097
KEGG Pathways
Metabolic & Signaling
ko04710 map04710
Pfam Domains
Protein Families
DNA_photolyase FAD_binding_7

Protein Analysis

91

Amino Acids

10.5

Weight (kDa)

8.47

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 10 - 82 5.9e-18 DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 30
AflII CTTAAG 2 cut(s) 101, 167
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 3 cut(s) 109, 227, 255
AluI AGCT 3 cut(s) 109, 227, 255
AlwNI CAGNNNCTG 1 cut(s) 79
AoxI GGCC 2 cut(s) 42, 46
ApeKI GCWGC 1 cut(s) 252
AspS9I GGNCC 2 cut(s) 33, 114
AvaII GGWCC 2 cut(s) 33, 114
BbvI GCAGC 1 cut(s) 264
BciT130I CCWGG 1 cut(s) 31
BfaI CTAG 1 cut(s) 230
BfrI CTTAAG 2 cut(s) 101, 167
BisI GCNGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 254
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 2 cut(s) 33, 114
BmgT120I GGNCC 2 cut(s) 33, 114
BmiI GGNNCC 2 cut(s) 65, 115
BmrFI CCNGG 1 cut(s) 31
BmrI ACTGGG 1 cut(s) 138
BmuI ACTGGG 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 264
BshFI GGCC 2 cut(s) 44, 48
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 30
BsnI GGCC 2 cut(s) 44, 48
BspANI GGCC 2 cut(s) 44, 48
BspLI GGNNCC 2 cut(s) 65, 115
BspTI CTTAAG 2 cut(s) 101, 167
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 1 cut(s) 144
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 31
BstAFI CTTAAG 2 cut(s) 101, 167
BstC8I GCNNGC 1 cut(s) 46
BstENI CCTNNNNNAGG 1 cut(s) 28
BstF5I GGATG 1 cut(s) 184
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 264
BstXI CCANNNNNNTGG 1 cut(s) 124
BsuRI GGCC 2 cut(s) 44, 48
BtsCI GGATG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 46
CaiI CAGNNNCTG 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 33, 114
CsiI ACCWGGT 1 cut(s) 29
CviJI RGCY 5 cut(s) 44, 48, 109, 227, 255
CviKI_1 RGCY 5 cut(s) 44, 48, 109, 227, 255
Eco130I CCWWGG 1 cut(s) 39
Eco47I GGWCC 2 cut(s) 33, 114
EcoNI CCTNNNNNAGG 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaiI YATR 3 cut(s) 204, 217, 250
Fnu4HI GCNGC 1 cut(s) 253
FokI GGATG 1 cut(s) 191
FseI GGCCGGCC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 253
FspBI CTAG 1 cut(s) 230
GluI GCNGC 1 cut(s) 253
HaeIII GGCC 2 cut(s) 44, 48
HapII CCGG 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 4 cut(s) 4, 57, 70, 76
HpaII CCGG 1 cut(s) 45
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 4 cut(s) 8, 67, 117, 230
HpyCH4V TGCA 1 cut(s) 252
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
LpnPI CCDG 9 cut(s) 16, 43, 46, 58, 62, 65, 80, 130, 157
Lsp1109I GCAGC 1 cut(s) 264
MabI ACCWGGT 1 cut(s) 29
MaeI CTAG 1 cut(s) 230
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 3 cut(s) 34, 46, 142
MroNI GCCGGC 1 cut(s) 44
MseI TTAA 4 cut(s) 102, 132, 168, 237
MspCI CTTAAG 2 cut(s) 101, 167
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 31
NaeI GCCGGC 1 cut(s) 46
NgoMIV GCCGGC 1 cut(s) 44
NlaIV GGNNCC 2 cut(s) 65, 115
PdiI GCCGGC 1 cut(s) 46
PfeI GAWTC 3 cut(s) 4, 57, 70
PflFI GACNNNGTC 1 cut(s) 31
PkrI GCNGC 1 cut(s) 254
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PpuMI RGGWCCY 1 cut(s) 33
Psp5II RGGWCCY 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 65, 115
PspPI GGNCC 2 cut(s) 33, 114
PspPPI RGGWCCY 1 cut(s) 33
PstNI CAGNNNCTG 1 cut(s) 79
PsyI GACNNNGTC 1 cut(s) 31
RigI GGCCGGCC 1 cut(s) 48
SaqAI TTAA 4 cut(s) 102, 132, 168, 237
SatI GCNGC 1 cut(s) 253
Sau96I GGNCC 2 cut(s) 33, 114
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 31
SetI ASST 7 cut(s) 35, 102, 111, 153, 229, 249, 257
SexAI ACCWGGT 1 cut(s) 29
SinI GGWCC 2 cut(s) 33, 114
SmlI CTYRAG 2 cut(s) 101, 167
SmoI CTYRAG 2 cut(s) 101, 167
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 29
StyI CCWWGG 1 cut(s) 39
TaqI TCGA 1 cut(s) 26
TfiI GAWTC 3 cut(s) 4, 57, 70
Tru1I TTAA 4 cut(s) 102, 132, 168, 237
Tru9I TTAA 4 cut(s) 102, 132, 168, 237
TscAI CASTG 1 cut(s) 151
TseI GCWGC 1 cut(s) 252
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 151
Tth111I GACNNNGTC 1 cut(s) 31
Vha464I CTTAAG 2 cut(s) 101, 167
VpaK11BI GGWCC 2 cut(s) 33, 114
XagI CCTNNNNNAGG 1 cut(s) 28
XbaI TCTAGA 1 cut(s) 229
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.