Rroxscaffold_3G00231090

FAD binding domain of DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0019060
Physical Location & Seq
Forward (+)
16012752 .. 16045809
33058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00231090.1

Sequence Viewer

Length: 540 bp
ATGGCTATCCGAATGATGGCAATGCCAAGAGCAAACGATTTTCAAAACTTGGGCACCCACTTGGCCGGGTCCTCCAAGGCCGGCCTGAACCGAATCTGGTTCCTGCTCCAAAGTCCGGTGAATTTGGATTTGAACCTCAAGAAGCTTGGGTCCAGATTGTTGGTGCTTAAAGGCGAACCCGGTGAGGTCATCTGGGATGTGAAAAAACTTTGCTTTGAGTATGACACCGAACCATATTACCAAGCTCTAGATGTTAAAGTCAAGCAAATGGAGAAGCATATCAAGACACTCATTGTCCTATCTCACTACTTGGAGGTGCAGTCTTTTTCCTCTCCATTGTCCACCATACTAAGCAAGCTCAATACTCCACAACTCCCAAAAGTTTTGCTCCAAACCACTGAAACAAGGGCTGCTTTCATAAACATATGCCCACACGGGCCATCACTCGGAAAGTACGTGGAAAGTGTGTTGAGCGGATTGCGGCAATTAGTGCTTATCTCGGTTGTGTGTGGAGACGCAATGAGATTTAGATGTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003913 GO:0003914 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0016829 GO:0016830 GO:0050896 GO:0140097
KEGG Pathways
Metabolic & Signaling
ko04710 map04710
Pfam Domains
Protein Families
DNA_photolyase FAD_binding_7

Protein Analysis

179

Amino Acids

20.12

Weight (kDa)

9.21

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 26 - 95 1.5e-09 DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AccBSI CCGCTC 1 cut(s) 474
AciI CCGC 2 cut(s) 474, 481
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 121
AfaI GTAC 1 cut(s) 455
AfiI CCNNNNNNNGG 3 cut(s) 16, 115, 446
AgsI TTSAA 2 cut(s) 44, 133
AluBI AGCT 3 cut(s) 145, 245, 358
AluI AGCT 3 cut(s) 145, 245, 358
Alw26I GTCTC 1 cut(s) 507
AoxI GGCC 4 cut(s) 63, 78, 82, 437
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 1 cut(s) 121
AspS9I GGNCC 3 cut(s) 69, 150, 437
AsuC2I CCSGG 2 cut(s) 67, 180
AsuHPI GGTGA 2 cut(s) 130, 194
AvaII GGWCC 2 cut(s) 69, 150
BaeGI GKGCMC 1 cut(s) 56
BanI GGYRCC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 397
BccI CCATC 2 cut(s) 10, 448
BcnI CCSGG 2 cut(s) 67, 180
BcoDI GTCTC 1 cut(s) 507
BfaI CTAG 1 cut(s) 248
BisI GCNGC 2 cut(s) 411, 482
BlsI GCNGC 2 cut(s) 412, 483
Bme1390I CCNGG 2 cut(s) 67, 180
Bme18I GGWCC 2 cut(s) 69, 150
BmgT120I GGNCC 3 cut(s) 69, 150, 437
BmiI GGNNCC 4 cut(s) 55, 70, 101, 151
BmrFI CCNGG 2 cut(s) 67, 180
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 2 cut(s) 67, 180
BsaAI YACGTR 1 cut(s) 457
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 115
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 115, 446
Bse118I RCCGGY 1 cut(s) 80
Bse3DI GCAATG 2 cut(s) 27, 525
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 3 cut(s) 16, 115, 446
BseMI GCAATG 2 cut(s) 27, 525
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 1 cut(s) 397
BsgI GTGCAG 1 cut(s) 338
BshFI GGCC 4 cut(s) 65, 80, 84, 439
BshNI GGYRCC 1 cut(s) 53
BsiSI CCGG 4 cut(s) 66, 81, 116, 180
BslI CCNNNNNNNGG 3 cut(s) 16, 115, 446
BsmAI GTCTC 1 cut(s) 507
BsmBI CGTCTC 1 cut(s) 507
BsnI GGCC 4 cut(s) 65, 80, 84, 439
Bsp1286I GDGCHC 1 cut(s) 56
BspACI CCGC 2 cut(s) 474, 481
BspANI GGCC 4 cut(s) 65, 80, 84, 439
BspLI GGNNCC 4 cut(s) 55, 70, 101, 151
BspT107I GGYRCC 1 cut(s) 53
BsrBI CCGCTC 1 cut(s) 474
BsrDI GCAATG 2 cut(s) 27, 525
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 75
BstAPI GCANNNNNTGC 1 cut(s) 490
BstBAI YACGTR 1 cut(s) 457
BstC8I GCNNGC 2 cut(s) 82, 356
BstDEI CTNAG 1 cut(s) 350
BstF5I GGATG 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 507
BstMWI GCNNNNNNNGC 1 cut(s) 490
BstSCI CCNGG 2 cut(s) 65, 178
BstSLI GKGCMC 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 397
BstXI CCANNNNNNTGG 1 cut(s) 160
BsuRI GGCC 4 cut(s) 65, 80, 84, 439
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 2 cut(s) 82, 356
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 3 cut(s) 69, 150, 437
CseI GACGC 1 cut(s) 524
Csp6I GTAC 1 cut(s) 454
CviJI RGCY 9 cut(s) 5, 65, 80, 84, 145, 245, 358, 410, 439
CviKI_1 RGCY 9 cut(s) 5, 65, 80, 84, 145, 245, 358, 410, 439
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 1 cut(s) 350
EaeI YGGCCR 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 75
Eco47I GGWCC 2 cut(s) 69, 150
EcoO109I RGGNCCY 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 507
FaiI YATR 7 cut(s) 222, 235, 279, 347, 419, 425, 427
FalI AAGNNNNNCTT 2 cut(s) 397, 429
FauNDI CATATG 1 cut(s) 425
Fnu4HI GCNGC 2 cut(s) 411, 482
FokI GGATG 1 cut(s) 209
FseI GGCCGGCC 1 cut(s) 84
Fsp4HI GCNGC 2 cut(s) 411, 482
FspBI CTAG 1 cut(s) 248
GluI GCNGC 2 cut(s) 411, 482
HaeIII GGCC 4 cut(s) 65, 80, 84, 439
HapII CCGG 4 cut(s) 66, 81, 116, 180
HgaI GACGC 1 cut(s) 524
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 1 cut(s) 93
HpaII CCGG 4 cut(s) 66, 81, 116, 180
HphI GGTGA 2 cut(s) 130, 194
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 2 cut(s) 11, 449
Hpy188III TCNNGA 4 cut(s) 139, 153, 248, 283
Hpy8I GTNNAC 1 cut(s) 342
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 1 cut(s) 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 490
HpyF3I CTNAG 1 cut(s) 350
HpySE526I ACGT 1 cut(s) 456
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
LmnI GCTCC 2 cut(s) 111, 393
LpnPI CCDG 9 cut(s) 79, 82, 94, 98, 116, 129, 166, 178, 193
Lsp1109I GCAGC 1 cut(s) 397
MaeI CTAG 1 cut(s) 248
MaeII ACGT 1 cut(s) 456
MbiI CCGCTC 1 cut(s) 474
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 2 cut(s) 121, 485
MnlI CCTC 5 cut(s) 82, 146, 178, 307, 340
MroNI GCCGGC 1 cut(s) 80
MseI TTAA 2 cut(s) 168, 255
MspI CCGG 4 cut(s) 66, 81, 116, 180
MspR9I CCNGG 2 cut(s) 67, 180
MwoI GCNNNNNNNGC 1 cut(s) 490
NaeI GCCGGC 1 cut(s) 82
NciI CCSGG 2 cut(s) 67, 180
NdeI CATATG 1 cut(s) 425
NgoMIV GCCGGC 1 cut(s) 80
NlaIV GGNNCC 4 cut(s) 55, 70, 101, 151
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PdiI GCCGGC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 93
PkrI GCNGC 2 cut(s) 412, 483
Ppu21I YACGTR 1 cut(s) 457
PpuMI RGGWCCY 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 69
PspN4I GGNNCC 4 cut(s) 55, 70, 101, 151
PspPI GGNCC 3 cut(s) 69, 150, 437
PspPPI RGGWCCY 1 cut(s) 69
RigI GGCCGGCC 1 cut(s) 84
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
SaqAI TTAA 2 cut(s) 168, 255
SatI GCNGC 2 cut(s) 411, 482
Sau96I GGNCC 3 cut(s) 69, 150, 437
ScrFI CCNGG 2 cut(s) 67, 180
SduI GDGCHC 1 cut(s) 56
SetI ASST 7 cut(s) 138, 147, 189, 247, 318, 360, 459
SinI GGWCC 2 cut(s) 69, 150
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 2 cut(s) 121, 485
SsiI CCGC 2 cut(s) 474, 481
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 2 cut(s) 65, 178
StyI CCWWGG 1 cut(s) 75
TaiI ACGT 1 cut(s) 459
TasI AATT 2 cut(s) 121, 485
TauI GCSGC 1 cut(s) 484
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 2 cut(s) 168, 255
Tru9I TTAA 2 cut(s) 168, 255
TscAI CASTG 1 cut(s) 403
TseI GCWGC 1 cut(s) 410
TspDTI ATGAA 1 cut(s) 406
TspRI CASTG 1 cut(s) 403
VpaK11BI GGWCC 2 cut(s) 69, 150
XapI RAATTY 1 cut(s) 121
XbaI TCTAGA 1 cut(s) 247
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.