Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0019060

Physical Location & Seq

Genomic Coordinates Reverse (-)

5815650 .. 5821662

Gene Structure 6013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00222750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCTGGAGAAATATCCATTGGTGCGCAAGGATCTTCAAAAAAGAATCGAAATGCTCAAGAAAGCCAAGGAGATTTGTGATGGCATCCATCATGGTGCTTTTAATATTACTTTATCATGGTATCAGAGCGGGTTACCCACGTGTGCATGCCTAACGGCCACACGGGCTCCACGTCACCCAAAAATTGTCCACGTGTATGGCTTGAAAATTCGCCACACCTCTCTCTTCTCGAACTTGGTTTCGTCTTTGTCCAAACTCGGGTTCCGCAAGGGCACGAGGATCCACGACAACCCCGCTCTCGAGCATGCCTCCAAGGCCTCCAATTTCCTCTACCCGGTCTCTGTCATCGATCCGTATTGCATGAATCCCAACCCGAGCACCCTCGCCCGGGTCCTCCAAGGCCGGCCTGAACCGAATCGGTTCCCGCTTCGATGGGATGTGAAAAAGCTTTGCTTTGAGTATGACACCGAACCATATTACCAAGCTCTAGATGTTAAAATCAGGGATTTTGCATCCGCGGCTGGGATTGAGGTTTTCAGTCCTGTAAGTCACACGCTGTTCAATCCAGGGGAGATTATACAGAAGGTGAGGTTTTTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003913 GO:0003914 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0016829 GO:0016830 GO:0050896 GO:0140097

KEGG Pathways

Metabolic & Signaling

ko04710 map04710

Pfam Domains

Protein Families

DNA_photolyase FAD_binding_7

Protein Analysis

200

Amino Acids

22.82

Weight (kDa)

9.55

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_photolyase	PF00875	88 - 119	8e-06	DNA photolyase
DNA_photolyase	PF00875	144 - 193	8.9e-07	DNA photolyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019060)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015098
rosa_multiflora	Rmu_sc0001368.1_g000008 Rmu_sc0001374.1_g000030 Rmu_sc0005571.1_g000024
rosa_roxburghii	Rroxscaffold_3G00222750 Rroxscaffold_3G00231090
rosa_samantha	Rh1DG151500 Rh4CG237600 Rh5DG504200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	26
AccBSI	CCGCTC	2 cut(s)	129, 296
AccII	CGCG	1 cut(s)	518
AciI	CCGC	6 cut(s)	129, 265, 294, 425, 516, 518
AclWI	GGATC	4 cut(s)	39, 274, 287, 344
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	207
AcvI	CACGTG	2 cut(s)	141, 193
AfiI	CCNNNNNNNGG	5 cut(s)	258, 334, 387, 388, 522
AflIII	ACRYGT	2 cut(s)	140, 192
AgsI	TTSAA	4 cut(s)	38, 205, 562, 598
AjiI	CACGTC	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	565
AjuI	GAANNNNNNNTTGG	3 cut(s)	34, 245, 277
AluBI	AGCT	2 cut(s)	448, 485
AluI	AGCT	2 cut(s)	448, 485
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	4 cut(s)	39, 274, 287, 344
Ama87I	CYCGRG	4 cut(s)	257, 299, 373, 387
AoxI	GGCC	4 cut(s)	156, 315, 400, 404
ApoI	RAATTY	1 cut(s)	207
Asp700I	GAANNNNTTC	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	391
AsuC2I	CCSGG	3 cut(s)	335, 388, 389
AsuHPI	GGTGA	2 cut(s)	167, 598
AvaI	CYCGRG	4 cut(s)	257, 299, 373, 387
AvaII	GGWCC	1 cut(s)	391
BaeGI	GKGCMC	1 cut(s)	275
BamHI	GGATCC	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	169
BauI	CACGAG	1 cut(s)	274
BbrPI	CACGTG	2 cut(s)	141, 193
Bbv12I	GWGCWC	1 cut(s)	380
BccI	CCATC	3 cut(s)	74, 96, 426
BceAI	ACGGC	1 cut(s)	171
BciT130I	CCWGG	1 cut(s)	567
BcnI	CCSGG	3 cut(s)	335, 388, 389
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	1 cut(s)	488
BglI	GCCNNNNNGGC	2 cut(s)	164, 314
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
Bme1390I	CCNGG	4 cut(s)	335, 388, 389, 567
Bme18I	GGWCC	1 cut(s)	391
BmeT110I	CYCGRG	4 cut(s)	257, 299, 373, 387
BmgBI	CACGTC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	5 cut(s)	168, 263, 281, 392, 422
BmrFI	CCNGG	4 cut(s)	335, 388, 389, 567
BmsI	GCATC	2 cut(s)	93, 521
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
BpmI	CTGGAG	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	3 cut(s)	335, 388, 389
Bsa29I	ATCGAT	1 cut(s)	348
BsaAI	YACGTR	2 cut(s)	141, 193
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	6 cut(s)	66, 312, 387, 397, 516, 566
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	5 cut(s)	258, 334, 387, 388, 522
Bse118I	RCCGGY	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	567
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	6 cut(s)	66, 312, 387, 397, 516, 566
BseGI	GGATG	3 cut(s)	84, 442, 512
BseLI	CCNNNNNNNGG	5 cut(s)	258, 334, 387, 388, 522
BseSI	GKGCMC	1 cut(s)	275
BseYI	CCCAGC	1 cut(s)	521
Bsh1236I	CGCG	1 cut(s)	518
BshFI	GGCC	4 cut(s)	158, 317, 402, 406
BshVI	ATCGAT	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	380
BsiHKCI	CYCGRG	4 cut(s)	257, 299, 373, 387
BsiSI	CCGG	3 cut(s)	335, 388, 403
BslI	CCNNNNNNNGG	5 cut(s)	258, 334, 387, 388, 522
BsmAI	GTCTC	1 cut(s)	343
BsnI	GGCC	4 cut(s)	158, 317, 402, 406
Bso31I	GGTCTC	1 cut(s)	343
BsoBI	CYCGRG	4 cut(s)	257, 299, 373, 387
Bsp1286I	GDGCHC	3 cut(s)	169, 275, 380
Bsp143I	GATC	3 cut(s)	31, 279, 349
BspACI	CCGC	6 cut(s)	129, 265, 294, 425, 516, 518
BspANI	GGCC	4 cut(s)	158, 317, 402, 406
BspDI	ATCGAT	1 cut(s)	348
BspFNI	CGCG	1 cut(s)	518
BspLI	GGNNCC	5 cut(s)	168, 263, 281, 392, 422
BspPI	GGATC	4 cut(s)	39, 274, 287, 344
BspTNI	GGTCTC	1 cut(s)	343
BsrBI	CCGCTC	2 cut(s)	129, 296
BsrFI	RCCGGY	1 cut(s)	402
BssAI	RCCGGY	1 cut(s)	402
BssECI	CCNNGG	6 cut(s)	66, 312, 387, 397, 516, 566
BssMI	GATC	3 cut(s)	31, 279, 349
BssSI	CACGAG	1 cut(s)	274
BssT1I	CCWWGG	3 cut(s)	66, 312, 397
Bst2BI	CACGAG	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	567
Bst6I	CTCTTC	1 cut(s)	230
BstBAI	YACGTR	2 cut(s)	141, 193
BstC8I	GCNNGC	3 cut(s)	148, 306, 404
BstDSI	CCRYGG	1 cut(s)	516
BstEII	GGTNACC	1 cut(s)	132
BstF5I	GGATG	3 cut(s)	84, 442, 512
BstFNI	CGCG	1 cut(s)	518
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	3 cut(s)	34, 282, 352
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	3 cut(s)	31, 279, 349
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 314, 518
BstNI	CCWGG	1 cut(s)	567
BstNSI	RCATGY	2 cut(s)	150, 308
BstPI	GGTNACC	1 cut(s)	132
BstSCI	CCNGG	4 cut(s)	333, 386, 387, 565
BstSLI	GKGCMC	1 cut(s)	275
BstUI	CGCG	1 cut(s)	518
BstX2I	RGATCY	2 cut(s)	31, 279
BstXI	CCANNNNNNTGG	1 cut(s)	197
BstYI	RGATCY	2 cut(s)	31, 279
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	4 cut(s)	158, 317, 402, 406
BsuTUI	ATCGAT	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	516
BtrI	CACGTC	1 cut(s)	173
BtsCI	GGATG	3 cut(s)	84, 442, 512
Cac8I	GCNNGC	3 cut(s)	148, 306, 404
CfoI	GCGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	391
Cfr42I	CCGCGG	1 cut(s)	519
Cfr9I	CCCGGG	1 cut(s)	387
ClaI	ATCGAT	1 cut(s)	348
CviAII	CATG	5 cut(s)	92, 117, 147, 305, 361
DpnI	GATC	3 cut(s)	33, 281, 351
DpnII	GATC	3 cut(s)	31, 279, 349
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco130I	CCWWGG	3 cut(s)	66, 312, 397
Eco147I	AGGCCT	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	391
Eco72I	CACGTG	2 cut(s)	141, 193
Eco88I	CYCGRG	4 cut(s)	257, 299, 373, 387
Eco91I	GGTNACC	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	391
EcoO65I	GGTNACC	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	565
EcoT14I	CCWWGG	3 cut(s)	66, 312, 397
EcoT38I	GRGCYC	1 cut(s)	169
ErhI	CCWWGG	3 cut(s)	66, 312, 397
FaeI	CATG	5 cut(s)	95, 120, 150, 308, 364
FaiI	YATR	9 cut(s)	93, 118, 148, 198, 306, 362, 462, 475, 578
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FatI	CATG	5 cut(s)	91, 116, 146, 304, 360
FauI	CCCGC	3 cut(s)	122, 301, 432
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	3 cut(s)	71, 449, 499
FriOI	GRGCYC	1 cut(s)	169
FseI	GGCCGGCC	1 cut(s)	406
Fsp4HI	GCNGC	1 cut(s)	519
FspBI	CTAG	1 cut(s)	488
FspI	TGCGCA	1 cut(s)	26
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	519
GsaI	CCCAGC	1 cut(s)	525
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	4 cut(s)	158, 317, 402, 406
HapII	CCGG	3 cut(s)	335, 388, 403
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	5 cut(s)	95, 120, 150, 308, 364
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	3 cut(s)	45, 364, 415
HpaII	CCGG	3 cut(s)	335, 388, 403
HphI	GGTGA	2 cut(s)	167, 598
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	4 cut(s)	58, 229, 299, 488
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	577
HpyCH4IV	ACGT	3 cut(s)	140, 172, 192
HpyCH4V	TGCA	3 cut(s)	146, 360, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 314, 518
HpySE526I	ACGT	3 cut(s)	140, 172, 192
Hsp92II	CATG	5 cut(s)	95, 120, 150, 308, 364
HspAI	GCGC	1 cut(s)	25
KroI	GCCGGC	1 cut(s)	402
KroNI	GCCGGC	1 cut(s)	404
KspI	CCGCGG	1 cut(s)	519
Kzo9I	GATC	3 cut(s)	31, 279, 349
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	9 cut(s)	348, 401, 416, 420, 487, 507, 552, 555, 579
LweI	GCATC	2 cut(s)	93, 521
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	3 cut(s)	140, 172, 192
MaeIII	GTNAC	3 cut(s)	132, 173, 548
MalI	GATC	3 cut(s)	33, 281, 351
MbiI	CCGCTC	2 cut(s)	129, 296
MboI	GATC	3 cut(s)	31, 279, 349
MboII	GAAGA	2 cut(s)	26, 217
MflI	RGATCY	2 cut(s)	31, 279
MhlI	GDGCHC	3 cut(s)	169, 275, 380
MluCI	AATT	3 cut(s)	183, 207, 322
MnlI	CCTC	9 cut(s)	229, 270, 319, 328, 338, 392, 404, 523, 582
MroNI	GCCGGC	1 cut(s)	402
MroXI	GAANNNNTTC	1 cut(s)	419
MseI	TTAA	2 cut(s)	102, 495
MslI	CAYNNNNRTG	2 cut(s)	93, 195
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	3 cut(s)	335, 388, 403
MspR9I	CCNGG	4 cut(s)	335, 388, 389, 567
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	1 cut(s)	518
MwoI	GCNNNNNNNGC	3 cut(s)	164, 314, 518
NaeI	GCCGGC	1 cut(s)	404
NciI	CCSGG	3 cut(s)	335, 388, 389
NdeII	GATC	3 cut(s)	31, 279, 349
NgoMIV	GCCGGC	1 cut(s)	402
NlaIII	CATG	5 cut(s)	95, 120, 150, 308, 364
NlaIV	GGNNCC	5 cut(s)	168, 263, 281, 392, 422
NmuCI	GTSAC	2 cut(s)	173, 548
NsbI	TGCGCA	1 cut(s)	26
NspI	RCATGY	2 cut(s)	150, 308
PaeI	GCATGC	2 cut(s)	150, 308
PaeR7I	CTCGAG	1 cut(s)	299
PceI	AGGCCT	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	169
PdiI	GCCGGC	1 cut(s)	404
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	3 cut(s)	45, 364, 415
PkrI	GCNGC	1 cut(s)	520
PmaCI	CACGTG	2 cut(s)	141, 193
PmlI	CACGTG	2 cut(s)	141, 193
Ppu21I	YACGTR	2 cut(s)	141, 193
PpuMI	RGGWCCY	1 cut(s)	391
Psp5II	RGGWCCY	1 cut(s)	391
Psp6I	CCWGG	1 cut(s)	565
PspCI	CACGTG	2 cut(s)	141, 193
PspEI	GGTNACC	1 cut(s)	132
PspFI	CCCAGC	1 cut(s)	521
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	5 cut(s)	168, 263, 281, 392, 422
PspPI	GGNCC	1 cut(s)	391
PspPPI	RGGWCCY	1 cut(s)	391
PsuI	RGATCY	2 cut(s)	31, 279
RigI	GGCCGGCC	1 cut(s)	406
RseI	CAYNNNNRTG	2 cut(s)	93, 195
SacII	CCGCGG	1 cut(s)	519
SaqAI	TTAA	2 cut(s)	102, 495
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	3 cut(s)	31, 279, 349
Sau96I	GGNCC	1 cut(s)	391
ScrFI	CCNGG	4 cut(s)	335, 388, 389, 567
SduI	GDGCHC	3 cut(s)	169, 275, 380
SetI	ASST	9 cut(s)	143, 175, 195, 221, 450, 487, 534, 588, 593
SfaNI	GCATC	2 cut(s)	93, 521
Sfr274I	CTCGAG	1 cut(s)	299
Sfr303I	CCGCGG	1 cut(s)	519
SgrBI	CCGCGG	1 cut(s)	519
SinI	GGWCC	1 cut(s)	391
SlaI	CTCGAG	1 cut(s)	299
SmaI	CCCGGG	1 cut(s)	389
SmiMI	CAYNNNNRTG	2 cut(s)	93, 195
SmlI	CTYRAG	2 cut(s)	56, 299
SmoI	CTYRAG	2 cut(s)	56, 299
SphI	GCATGC	2 cut(s)	150, 308
Sse9I	AATT	3 cut(s)	183, 207, 322
SseBI	AGGCCT	1 cut(s)	317
SsiI	CCGC	6 cut(s)	129, 265, 294, 425, 516, 518
SspI	AATATT	1 cut(s)	106
SspMI	CTAG	1 cut(s)	488
StuI	AGGCCT	1 cut(s)	317
StyD4I	CCNGG	4 cut(s)	333, 386, 387, 565
StyI	CCWWGG	3 cut(s)	66, 312, 397
TaiI	ACGT	3 cut(s)	143, 175, 195
TaqI	TCGA	5 cut(s)	48, 230, 300, 348, 430
TasI	AATT	3 cut(s)	183, 207, 322
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	3 cut(s)	45, 364, 415
Tru1I	TTAA	2 cut(s)	102, 495
Tru9I	TTAA	2 cut(s)	102, 495
TseFI	GTSAC	2 cut(s)	173, 548
Tsp45I	GTSAC	2 cut(s)	173, 548
TspDTI	ATGAA	1 cut(s)	377
TspGWI	ACGGA	1 cut(s)	342
TspMI	CCCGGG	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	1 cut(s)	207
XbaI	TCTAGA	1 cut(s)	487
XceI	RCATGY	2 cut(s)	150, 308
XhoI	CTCGAG	1 cut(s)	299
XmaI	CCCGGG	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.