Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001374.1

Orthogroup ID

OG0019060

Physical Location & Seq

Genomic Coordinates Forward (+)

69400 .. 74227

Gene Structure 4828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001374.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgaggatccacgacaaccctgctctcgagcacgcctccaaggcctccaatttcctctacccggtcttcttcatcgatcagcactgcatgaattccaacccgaacgcaccctcgaccgggtcctccaaggccgacctgaacctaatctggttcctgctccagagtctggtggatttggatttgaacctcaagaagcttgggtccagattgttgctgcttaaaggcgaatccagtgaggtcatcgttcgttgccttaaggagtgggatgtgaaaaaactttgctttgagtatgacaccgaaccatattaccaagctctagatgttaaagtcaagcaaatggagaagcatatcaagacactcattgtcctatctcactacttggaggtgcagtctttttcctctccattgtccaccatactaagcaagctcaagactccacaactcccaaaaggcataatcgattttctaaaactcagccgcttaggcattgggcgatgggtctccaccatgaggaatggaaaatccgtggatttggatgggttaaggttgggcggctgcttaggcggggctgatcctttggttgcatttacacctaaggtttcgggggaccttccttgcatcccaattgtgggttacaacctctttcataatgatttgcttctccatggttgcaattctgtggatactttgggctgcatccaggagtgggatcacctctttcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003913 GO:0003914 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0016829 GO:0016830 GO:0050896 GO:0140097

KEGG Pathways

Metabolic & Signaling

ko04710 map04710

Pfam Domains

Protein Families

DNA_photolyase FAD_binding_7

Protein Analysis

241

Amino Acids

27.01

Weight (kDa)

7.06

Isoelectric Point (pI)

28.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019060)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015098
rosa_multiflora	Rmu_sc0001368.1_g000008 Rmu_sc0001374.1_g000030 Rmu_sc0005571.1_g000024
rosa_roxburghii	Rroxscaffold_3G00222750 Rroxscaffold_3G00231090
rosa_samantha	Rh1DG151500 Rh4CG237600 Rh5DG504200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	166
AciI	CCGC	3 cut(s)	478, 552, 564
AclWI	GGATC	3 cut(s)	14, 566, 717
AcsI	RAATTY	1 cut(s)	91
AfiI	CCNNNNNNNGG	8 cut(s)	61, 116, 117, 166, 510, 628, 629, 706
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	2 cut(s)	184, 722
AjnI	CCWGG	1 cut(s)	699
AluBI	AGCT	3 cut(s)	196, 314, 427
AluI	AGCT	3 cut(s)	196, 314, 427
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	505
AlwI	GGATC	3 cut(s)	14, 566, 717
AlwNI	CAGNNNCTG	1 cut(s)	166
Ama87I	CYCGRG	1 cut(s)	26
AoxI	GGCC	2 cut(s)	42, 129
ApeKI	GCWGC	3 cut(s)	214, 555, 693
ApoI	RAATTY	1 cut(s)	91
AspS9I	GGNCC	3 cut(s)	120, 201, 607
AsuC2I	CCSGG	2 cut(s)	62, 118
AsuHPI	GGTGA	1 cut(s)	704
AvaI	CYCGRG	1 cut(s)	26
AvaII	GGWCC	3 cut(s)	120, 201, 607
AxyI	CCTNAGG	1 cut(s)	594
BamHI	GGATCC	1 cut(s)	6
BbsI	GAAGAC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	3 cut(s)	201, 542, 680
BccI	CCATC	2 cut(s)	489, 530
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciT130I	CCWGG	1 cut(s)	701
BciVI	GTATCC	1 cut(s)	676
BcnI	CCSGG	2 cut(s)	62, 118
BcoDI	GTCTC	1 cut(s)	505
BfaI	CTAG	1 cut(s)	317
BfrI	CTTAAG	1 cut(s)	254
BfuI	GTATCC	1 cut(s)	676
BglI	GCCNNNNNGGC	2 cut(s)	41, 483
BisI	GCNGC	5 cut(s)	215, 478, 553, 556, 694
BlsI	GCNGC	5 cut(s)	216, 479, 554, 557, 695
Bme1390I	CCNGG	3 cut(s)	62, 118, 701
Bme18I	GGWCC	3 cut(s)	120, 201, 607
BmeT110I	CYCGRG	1 cut(s)	26
BmgT120I	GGNCC	3 cut(s)	120, 201, 607
BmiI	GGNNCC	5 cut(s)	8, 121, 152, 202, 608
BmrFI	CCNGG	3 cut(s)	62, 118, 701
BmsI	GCATC	2 cut(s)	627, 705
BpiI	GAAGAC	1 cut(s)	58
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	143
Bpu10I	CCTNAGC	2 cut(s)	481, 559
BpuEI	CTTGAG	2 cut(s)	173, 413
BpuMI	CCSGG	2 cut(s)	62, 118
Bsa29I	ATCGAT	2 cut(s)	75, 459
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	4 cut(s)	39, 126, 525, 664
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	8 cut(s)	61, 116, 117, 166, 510, 628, 629, 706
Bse1I	ACTGG	1 cut(s)	231
Bse21I	CCTNAGG	1 cut(s)	594
BseBI	CCWGG	1 cut(s)	701
BseCI	ATCGAT	2 cut(s)	75, 459
BseDI	CCNNGG	4 cut(s)	39, 126, 525, 664
BseGI	GGATG	4 cut(s)	271, 541, 618, 696
BseLI	CCNNNNNNNGG	8 cut(s)	61, 116, 117, 166, 510, 628, 629, 706
BseMII	CTCAG	1 cut(s)	487
BseNI	ACTGG	1 cut(s)	231
BseXI	GCAGC	3 cut(s)	201, 542, 680
BsgI	GTGCAG	1 cut(s)	407
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	2 cut(s)	44, 131
BshVI	ATCGAT	2 cut(s)	75, 459
BsiEI	CGRYCG	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	62, 117
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	8 cut(s)	61, 116, 117, 166, 510, 628, 629, 706
BsmAI	GTCTC	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	620
BsnI	GGCC	2 cut(s)	44, 131
Bso31I	GGTCTC	1 cut(s)	505
BsoBI	CYCGRG	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	4 cut(s)	6, 76, 571, 709
Bsp19I	CCATGG	1 cut(s)	664
BspACI	CCGC	3 cut(s)	478, 552, 564
BspANI	GGCC	2 cut(s)	44, 131
BspCNI	CTCAG	1 cut(s)	486
BspDI	ATCGAT	2 cut(s)	75, 459
BspLI	GGNNCC	5 cut(s)	8, 121, 152, 202, 608
BspPI	GGATC	3 cut(s)	14, 566, 717
BspTI	CTTAAG	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	505
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	4 cut(s)	39, 126, 525, 664
BssMI	GATC	4 cut(s)	6, 76, 571, 709
BssT1I	CCWWGG	3 cut(s)	39, 126, 664
Bst2UI	CCWGG	1 cut(s)	701
BstAFI	CTTAAG	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	33, 425
BstDEI	CTNAG	5 cut(s)	419, 473, 481, 559, 594
BstDSI	CCRYGG	2 cut(s)	525, 664
BstF5I	GGATG	4 cut(s)	271, 541, 618, 696
BstKTI	GATC	4 cut(s)	9, 79, 574, 712
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	4 cut(s)	6, 76, 571, 709
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 483, 561
BstNI	CCWGG	1 cut(s)	701
BstSCI	CCNGG	3 cut(s)	60, 116, 699
BstV1I	GCAGC	3 cut(s)	201, 542, 680
BstV2I	GAAGAC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
Bsu15I	ATCGAT	2 cut(s)	75, 459
Bsu36I	CCTNAGG	1 cut(s)	594
BsuI	GTATCC	1 cut(s)	676
BsuRI	GGCC	2 cut(s)	44, 131
BsuTUI	ATCGAT	2 cut(s)	75, 459
BtgI	CCRYGG	2 cut(s)	525, 664
BtgZI	GCGATG	1 cut(s)	508
BtsCI	GGATG	4 cut(s)	271, 541, 618, 696
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	82, 238
Cac8I	GCNNGC	2 cut(s)	33, 425
CaiI	CAGNNNCTG	1 cut(s)	166
Cfr13I	GGNCC	3 cut(s)	120, 201, 607
ClaI	ATCGAT	2 cut(s)	75, 459
CviAII	CATG	3 cut(s)	88, 508, 665
CviJI	RGCY	9 cut(s)	44, 131, 196, 314, 427, 477, 555, 569, 693
CviKI_1	RGCY	9 cut(s)	44, 131, 196, 314, 427, 477, 555, 569, 693
DdeI	CTNAG	5 cut(s)	419, 473, 481, 559, 594
DpnI	GATC	4 cut(s)	8, 78, 573, 711
DpnII	GATC	4 cut(s)	6, 76, 571, 709
Eco130I	CCWWGG	3 cut(s)	39, 126, 664
Eco147I	AGGCCT	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	505
Eco47I	GGWCC	3 cut(s)	120, 201, 607
Eco81I	CCTNAGG	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	26
EcoO109I	RGGNCCY	2 cut(s)	120, 607
EcoRI	GAATTC	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	699
EcoT14I	CCWWGG	3 cut(s)	39, 126, 664
ErhI	CCWWGG	3 cut(s)	39, 126, 664
FaeI	CATG	3 cut(s)	91, 511, 668
FaiI	YATR	9 cut(s)	89, 291, 304, 348, 416, 455, 509, 648, 666
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	3 cut(s)	87, 507, 664
FauI	CCCGC	1 cut(s)	557
Fnu4HI	GCNGC	5 cut(s)	215, 478, 553, 556, 694
FokI	GGATG	4 cut(s)	278, 548, 605, 683
Fsp4HI	GCNGC	5 cut(s)	215, 478, 553, 556, 694
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	5 cut(s)	215, 478, 553, 556, 694
GsuI	CTGGAG	1 cut(s)	143
HaeIII	GGCC	2 cut(s)	44, 131
HapII	CCGG	2 cut(s)	62, 117
Hin1II	CATG	3 cut(s)	91, 511, 668
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	3 cut(s)	163, 227, 433
HpaII	CCGG	2 cut(s)	62, 117
HphI	GGTGA	1 cut(s)	704
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188III	TCNNGA	7 cut(s)	26, 160, 190, 204, 317, 352, 430
Hpy8I	GTNNAC	1 cut(s)	411
HpyAV	CCTTC	1 cut(s)	620
HpyCH4V	TGCA	6 cut(s)	87, 388, 584, 618, 672, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 483, 561
HpyF3I	CTNAG	5 cut(s)	419, 473, 481, 559, 594
Hsp92II	CATG	3 cut(s)	91, 511, 668
Kzo9I	GATC	4 cut(s)	6, 76, 571, 709
LmnI	GCTCC	1 cut(s)	162
Lsp1109I	GCAGC	3 cut(s)	201, 542, 680
LweI	GCATC	2 cut(s)	627, 705
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	4 cut(s)	8, 78, 573, 711
MboI	GATC	4 cut(s)	6, 76, 571, 709
MboII	GAAGA	2 cut(s)	58, 61
MfeI	CAATTG	1 cut(s)	624
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	4 cut(s)	49, 91, 624, 673
MlyI	GAGTC	2 cut(s)	172, 427
MmeI	TCCRAC	1 cut(s)	120
MseI	TTAA	4 cut(s)	219, 255, 324, 542
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	2 cut(s)	62, 117
MspR9I	CCNGG	3 cut(s)	62, 118, 701
MunI	CAATTG	1 cut(s)	624
MvaI	CCWGG	1 cut(s)	701
MwoI	GCNNNNNNNGC	3 cut(s)	41, 483, 561
NciI	CCSGG	2 cut(s)	62, 118
NcoI	CCATGG	1 cut(s)	664
NdeII	GATC	4 cut(s)	6, 76, 571, 709
NlaIII	CATG	3 cut(s)	91, 511, 668
NlaIV	GGNNCC	5 cut(s)	8, 121, 152, 202, 608
PaeR7I	CTCGAG	1 cut(s)	26
PceI	AGGCCT	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	227
PflFI	GACNNNGTC	1 cut(s)	118
PflMI	CCANNNNNTGG	1 cut(s)	166
PfoI	TCCNGGA	1 cut(s)	699
PkrI	GCNGC	5 cut(s)	216, 479, 554, 557, 695
PleI	GAGTC	2 cut(s)	171, 427
PpsI	GAGTC	2 cut(s)	171, 427
PpuMI	RGGWCCY	2 cut(s)	120, 607
Psp5II	RGGWCCY	2 cut(s)	120, 607
Psp6I	CCWGG	1 cut(s)	699
PspGI	CCWGG	1 cut(s)	699
PspN4I	GGNNCC	5 cut(s)	8, 121, 152, 202, 608
PspPI	GGNCC	3 cut(s)	120, 201, 607
PspPPI	RGGWCCY	2 cut(s)	120, 607
PstNI	CAGNNNCTG	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	6
PsyI	GACNNNGTC	1 cut(s)	118
SaqAI	TTAA	4 cut(s)	219, 255, 324, 542
SatI	GCNGC	5 cut(s)	215, 478, 553, 556, 694
Sau3AI	GATC	4 cut(s)	6, 76, 571, 709
Sau96I	GGNCC	3 cut(s)	120, 201, 607
SchI	GAGTC	2 cut(s)	172, 427
ScrFI	CCNGG	3 cut(s)	62, 118, 701
SduI	GDGCHC	1 cut(s)	33
SfaNI	GCATC	2 cut(s)	627, 705
Sfr274I	CTCGAG	1 cut(s)	26
SinI	GGWCC	3 cut(s)	120, 201, 607
SlaI	CTCGAG	1 cut(s)	26
SmlI	CTYRAG	4 cut(s)	26, 188, 254, 428
SmoI	CTYRAG	4 cut(s)	26, 188, 254, 428
Sse9I	AATT	4 cut(s)	49, 91, 624, 673
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	3 cut(s)	478, 552, 564
SspMI	CTAG	1 cut(s)	317
StuI	AGGCCT	1 cut(s)	44
StyD4I	CCNGG	3 cut(s)	60, 116, 699
StyI	CCWWGG	3 cut(s)	39, 126, 664
TaqI	TCGA	4 cut(s)	27, 75, 113, 459
TasI	AATT	4 cut(s)	49, 91, 624, 673
TauI	GCSGC	2 cut(s)	480, 555
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	4 cut(s)	219, 255, 324, 542
Tru9I	TTAA	4 cut(s)	219, 255, 324, 542
TscAI	CASTG	2 cut(s)	89, 238
TseI	GCWGC	3 cut(s)	214, 555, 693
TspDTI	ATGAA	3 cut(s)	61, 104, 635
TspGWI	ACGGA	1 cut(s)	514
TspRI	CASTG	2 cut(s)	89, 238
Tth111I	GACNNNGTC	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	166
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	3 cut(s)	120, 201, 607
XapI	RAATTY	1 cut(s)	91
XbaI	TCTAGA	1 cut(s)	316
XhoI	CTCGAG	1 cut(s)	26
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.