Rh5DG504200

FAD binding domain of DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0019060
Physical Location & Seq
Forward (+)
78851343 .. 78859006
7664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG504200.1

Sequence Viewer

Length: 504 bp
ATGAATCCCGACCCGAACGCACCCTTGGCCGGGTCCTCCAAGGCCGGCCTGAACCGAATCTGGTTCCTGCTCCAGAGTCTGGTGGATTTGGATTTGAACCTCAAGAAGCTTGGGTCCAGATTGTTGGTGCTTAAAGGCGAACCCAGGAGGTCATCGTTCGTTGCCTTAAGGAGTACAACAAATGAAATTCTGCAGCATAGCAAGAGCAAAGCTATGTGCACATTACATTCAGAAGTAATAAGCTTTACTGTGATTCCAGAAAAATTCCAGAAAATGCACATTACATTCAAAAGTAATATATACACTGTGATTCCAGAAAATGCACATTACATTCACATTACATTTAGTGTTTACTACTACAAACATTCCACAAATGAACACAGTTTTCCTCTCCCACAGCCAATACATTATGCAGCAACCAATCCACCTGCCTCAAATAGAAATCGTCACTCATTGCCGGTGCATCCCAAGCTTGAAGAATCAAACACATCACAAAATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003913 GO:0003914 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0016829 GO:0016830 GO:0050896 GO:0140097
KEGG Pathways
Metabolic & Signaling
ko04710 map04710
Pfam Domains
Protein Families
DNA_photolyase FAD_binding_7

Protein Analysis

167

Amino Acids

18.93

Weight (kDa)

9.64

Isoelectric Point (pI)

67.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 14 - 50 2.8e-07 DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 436
Acc36I ACCTGC 1 cut(s) 436
AccB7I CCANNNNNTGG 1 cut(s) 79
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 3 cut(s) 186, 263, 496
AfaI GTAC 1 cut(s) 175
AfiI CCNNNNNNNGG 3 cut(s) 29, 30, 79
AflII CTTAAG 1 cut(s) 166
AgsI TTSAA 3 cut(s) 97, 289, 476
AjnI CCWGG 1 cut(s) 143
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 4 cut(s) 109, 212, 243, 472
AluI AGCT 4 cut(s) 109, 212, 243, 472
Alw21I GWGCWC 1 cut(s) 221
Alw44I GTGCAC 1 cut(s) 217
AlwNI CAGNNNCTG 1 cut(s) 79
AoxI GGCC 3 cut(s) 27, 42, 46
ApaLI GTGCAC 1 cut(s) 217
ApeKI GCWGC 2 cut(s) 193, 413
ApoI RAATTY 3 cut(s) 186, 263, 496
AspS9I GGNCC 2 cut(s) 33, 114
AsuC2I CCSGG 1 cut(s) 31
AvaII GGWCC 2 cut(s) 33, 114
BaeGI GKGCMC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 221
BbvI GCAGC 2 cut(s) 205, 425
BciT130I CCWGG 1 cut(s) 145
BcnI CCSGG 1 cut(s) 31
BfmI CTRYAG 1 cut(s) 191
BfrI CTTAAG 1 cut(s) 166
BfuAI ACCTGC 1 cut(s) 436
BisI GCNGC 2 cut(s) 194, 414
BlsI GCNGC 2 cut(s) 195, 415
Bme1390I CCNGG 2 cut(s) 31, 145
Bme18I GGWCC 2 cut(s) 33, 114
BmgT120I GGNCC 2 cut(s) 33, 114
BmiI GGNNCC 3 cut(s) 34, 65, 115
BmrFI CCNGG 2 cut(s) 31, 145
BmsI GCATC 1 cut(s) 472
BpmI CTGGAG 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 31
BsaJI CCNNGG 3 cut(s) 24, 39, 143
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 30, 79
Bse118I RCCGGY 2 cut(s) 44, 457
Bse3DI GCAATG 1 cut(s) 452
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 3 cut(s) 24, 39, 143
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 3 cut(s) 29, 30, 79
BseMI GCAATG 1 cut(s) 452
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 2 cut(s) 205, 425
BshFI GGCC 3 cut(s) 29, 44, 48
BsiHKAI GWGCWC 1 cut(s) 221
BsiSI CCGG 3 cut(s) 30, 45, 458
BslI CCNNNNNNNGG 3 cut(s) 29, 30, 79
BsnI GGCC 3 cut(s) 29, 44, 48
Bsp1286I GDGCHC 1 cut(s) 221
BspANI GGCC 3 cut(s) 29, 44, 48
BspLI GGNNCC 3 cut(s) 34, 65, 115
BspMAI CTGCAG 1 cut(s) 195
BspMI ACCTGC 1 cut(s) 436
BspTI CTTAAG 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 452
BsrFI RCCGGY 2 cut(s) 44, 457
BssAI RCCGGY 2 cut(s) 44, 457
BssECI CCNNGG 3 cut(s) 24, 39, 143
BssT1I CCWWGG 2 cut(s) 24, 39
Bst2UI CCWGG 1 cut(s) 145
Bst4CI ACNGT 3 cut(s) 250, 307, 383
BstAFI CTTAAG 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 46
BstF5I GGATG 1 cut(s) 463
BstMWI GCNNNNNNNGC 2 cut(s) 26, 469
BstNI CCWGG 1 cut(s) 145
BstSCI CCNGG 2 cut(s) 29, 143
BstSFI CTRYAG 1 cut(s) 191
BstSLI GKGCMC 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 205, 425
BstXI CCANNNNNNTGG 1 cut(s) 124
BsuRI GGCC 3 cut(s) 29, 44, 48
BtsCI GGATG 1 cut(s) 463
BtsIMutI CAGTG 1 cut(s) 303
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 1 cut(s) 46
CaiI CAGNNNCTG 1 cut(s) 79
Cfr10I RCCGGY 2 cut(s) 44, 457
Cfr13I GGNCC 2 cut(s) 33, 114
Csp6I GTAC 1 cut(s) 174
CviJI RGCY 8 cut(s) 29, 44, 48, 109, 212, 243, 400, 472
CviKI_1 RGCY 8 cut(s) 29, 44, 48, 109, 212, 243, 400, 472
CviQI GTAC 1 cut(s) 174
EaeI YGGCCR 1 cut(s) 27
Eco130I CCWWGG 2 cut(s) 24, 39
Eco47I GGWCC 2 cut(s) 33, 114
EcoO109I RGGNCCY 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 2 cut(s) 24, 39
ErhI CCWWGG 2 cut(s) 24, 39
FaiI YATR 6 cut(s) 198, 215, 299, 301, 411, 502
Fnu4HI GCNGC 2 cut(s) 194, 414
FokI GGATG 1 cut(s) 450
FseI GGCCGGCC 1 cut(s) 48
Fsp4HI GCNGC 2 cut(s) 194, 414
GluI GCNGC 2 cut(s) 194, 414
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 3 cut(s) 29, 44, 48
HapII CCGG 3 cut(s) 30, 45, 458
HindIII AAGCTT 3 cut(s) 107, 241, 470
HinfI GANTC 6 cut(s) 4, 57, 76, 253, 310, 479
HpaII CCGG 3 cut(s) 30, 45, 458
Hpy166II GTNNAC 2 cut(s) 219, 352
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 7 cut(s) 8, 73, 103, 117, 257, 268, 314
Hpy8I GTNNAC 2 cut(s) 219, 352
HpyCH4III ACNGT 3 cut(s) 250, 307, 383
HpyCH4V TGCA 6 cut(s) 193, 219, 277, 323, 413, 463
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 469
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 75
Lsp1109I GCAGC 2 cut(s) 205, 425
LweI GCATC 1 cut(s) 472
MaeIII GTNAC 1 cut(s) 446
MboII GAAGA 1 cut(s) 488
MhlI GDGCHC 1 cut(s) 221
MluCI AATT 3 cut(s) 186, 263, 496
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 5 cut(s) 46, 110, 141, 399, 442
MroNI GCCGGC 1 cut(s) 44
MseI TTAA 2 cut(s) 132, 167
MspCI CTTAAG 1 cut(s) 166
MspI CCGG 3 cut(s) 30, 45, 458
MspR9I CCNGG 2 cut(s) 31, 145
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 2 cut(s) 26, 469
NaeI GCCGGC 1 cut(s) 46
NciI CCSGG 1 cut(s) 31
NgoMIV GCCGGC 1 cut(s) 44
NlaIV GGNNCC 3 cut(s) 34, 65, 115
NmuCI GTSAC 1 cut(s) 446
PaqCI CACCTGC 1 cut(s) 436
PdiI GCCGGC 1 cut(s) 46
PfeI GAWTC 5 cut(s) 4, 57, 253, 310, 479
PflMI CCANNNNNTGG 1 cut(s) 79
PkrI GCNGC 2 cut(s) 195, 415
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PpuMI RGGWCCY 1 cut(s) 33
Psp5II RGGWCCY 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 3 cut(s) 34, 65, 115
PspPI GGNCC 2 cut(s) 33, 114
PspPPI RGGWCCY 1 cut(s) 33
PstI CTGCAG 1 cut(s) 195
PstNI CAGNNNCTG 1 cut(s) 79
RigI GGCCGGCC 1 cut(s) 48
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SaqAI TTAA 2 cut(s) 132, 167
SatI GCNGC 2 cut(s) 194, 414
Sau96I GGNCC 2 cut(s) 33, 114
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 2 cut(s) 31, 145
SduI GDGCHC 1 cut(s) 221
SetI ASST 7 cut(s) 102, 111, 152, 214, 245, 430, 474
SfaNI GCATC 1 cut(s) 472
SfcI CTRYAG 1 cut(s) 191
SinI GGWCC 2 cut(s) 33, 114
SmlI CTYRAG 2 cut(s) 101, 166
SmoI CTYRAG 2 cut(s) 101, 166
Sse9I AATT 3 cut(s) 186, 263, 496
StyD4I CCNGG 2 cut(s) 29, 143
StyI CCWWGG 2 cut(s) 24, 39
TaaI ACNGT 3 cut(s) 250, 307, 383
TasI AATT 3 cut(s) 186, 263, 496
TatI WGTACW 1 cut(s) 173
TfiI GAWTC 5 cut(s) 4, 57, 253, 310, 479
Tru1I TTAA 2 cut(s) 132, 167
Tru9I TTAA 2 cut(s) 132, 167
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 2 cut(s) 193, 413
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 4 cut(s) 17, 198, 390, 489
TspRI CASTG 1 cut(s) 310
Van91I CCANNNNNTGG 1 cut(s) 79
Vha464I CTTAAG 1 cut(s) 166
VneI GTGCAC 1 cut(s) 217
VpaK11BI GGWCC 2 cut(s) 33, 114
XapI RAATTY 3 cut(s) 186, 263, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.