WD repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G33530 AT3G33530 AT3G33530 AT3G33530 AT3G33530 |
| fragaria_vesca | FvH4_1g02820 FvH4_1g02820 FvH4_1g02820 FvH4_1g02820 |
| malus_domestica | MD02G1028100.v1.1 MD15G1169800.v1.1 |
| prunus_persica | Prupe.7G246700_v2.0.a1 |
| pyrus_communis | pycom02g02310 pycom15g15140 |
| rosa_chinensis | RchiOBHm_Chr2g0087941 |
| rosa_laevigata | RLG00000015913 |
| rosa_multiflora | Rmu_sc0013931.1_g000009 Rmu_sc0014136.1_g000007 |
| rosa_roxburghii | Rroxscaffold_2G00153110 |
| rosa_rugosa | Rorug01G0479800 Rorug01G0479900 |
| rosa_samantha | Rh2AG034600 Rh2BG033600 Rh2CG034600 Rh2DG034300 |
| rosa_wichuraiana | Rw2G002700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2092 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 31, 3592 |
| AatII | GACGTC | 2 cut(s) | 35, 108 |
| Acc36I | ACCTGC | 1 cut(s) | 2092 |
| Acc65I | GGTACC | 1 cut(s) | 1941 |
| AccB1I | GGYRCC | 2 cut(s) | 1035, 1941 |
| AccBSI | CCGCTC | 3 cut(s) | 168, 289, 823 |
| AccII | CGCG | 5 cut(s) | 303, 578, 606, 833, 3665 |
| AccIII | TCCGGA | 2 cut(s) | 512, 2439 |
| AcoI | YGGCCR | 7 cut(s) | 135, 298, 345, 550, 759, 1134, 2254 |
| AcsI | RAATTY | 3 cut(s) | 1771, 2557, 3891 |
| AcuI | CTGAAG | 9 cut(s) | 695, 761, 1344, 1353, 1404, 1538, 1551, 2257, 3132 |
| AcyI | GRCGYC | 5 cut(s) | 26, 32, 105, 573, 1036 |
| AdeI | CACNNNGTG | 2 cut(s) | 868, 3839 |
| AflII | CTTAAG | 1 cut(s) | 1529 |
| AflIII | ACRYGT | 1 cut(s) | 3751 |
| AgsI | TTSAA | 6 cut(s) | 1074, 1605, 3326, 3548, 3709, 3948 |
| AjiI | CACGTC | 2 cut(s) | 246, 792 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2272, 2304 |
| AleI | CACNNNNGTG | 1 cut(s) | 1385 |
| Alw21I | GWGCWC | 4 cut(s) | 791, 1062, 1906, 2233 |
| Alw26I | GTCTC | 6 cut(s) | 190, 674, 911, 2466, 3183, 3543 |
| Alw44I | GTGCAC | 2 cut(s) | 1058, 1902 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3269, 3683 |
| Ama87I | CYCGRG | 1 cut(s) | 945 |
| Aor13HI | TCCGGA | 2 cut(s) | 512, 2439 |
| ApaLI | GTGCAC | 2 cut(s) | 1058, 1902 |
| ApoI | RAATTY | 3 cut(s) | 1771, 2557, 3891 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 650, 3360 |
| Asp718I | GGTACC | 1 cut(s) | 1941 |
| AspLEI | GCGC | 2 cut(s) | 580, 1038 |
| AsuC2I | CCSGG | 2 cut(s) | 134, 2892 |
| AsuHPI | GGTGA | 9 cut(s) | 12, 259, 658, 2448, 2873, 2963, 3064, 3113, 4025 |
| AsuNHI | GCTAGC | 1 cut(s) | 1582 |
| AvaI | CYCGRG | 1 cut(s) | 945 |
| AvaII | GGWCC | 8 cut(s) | 282, 403, 460, 472, 720, 754, 3844, 3983 |
| BaeGI | GKGCMC | 2 cut(s) | 1062, 1906 |
| BalI | TGGCCA | 1 cut(s) | 1136 |
| BamHI | GGATCC | 3 cut(s) | 95, 979, 2180 |
| BanI | GGYRCC | 2 cut(s) | 1035, 1941 |
| BanII | GRGCYC | 3 cut(s) | 11, 2174, 3787 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1536, 1568 |
| BauI | CACGAG | 1 cut(s) | 3413 |
| BbsI | GAAGAC | 2 cut(s) | 1341, 1917 |
| Bbv12I | GWGCWC | 4 cut(s) | 791, 1062, 1906, 2233 |
| BceAI | ACGGC | 3 cut(s) | 437, 1196, 1605 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 73, 107, 2189, 2223 |
| BciVI | GTATCC | 1 cut(s) | 2447 |
| BclI | TGATCA | 1 cut(s) | 1186 |
| BcnI | CCSGG | 2 cut(s) | 134, 2892 |
| BcoDI | GTCTC | 6 cut(s) | 190, 674, 911, 2466, 3183, 3543 |
| BfaI | CTAG | 5 cut(s) | 1583, 1776, 2018, 2121, 3380 |
| BfmI | CTRYAG | 3 cut(s) | 1416, 3444, 3624 |
| BfoI | RGCGCY | 1 cut(s) | 1039 |
| BfrI | CTTAAG | 1 cut(s) | 1529 |
| BfuAI | ACCTGC | 1 cut(s) | 2092 |
| BfuI | GTATCC | 1 cut(s) | 2447 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 117 |
| BglII | AGATCT | 1 cut(s) | 2732 |
| BlpI | GCTNAGC | 2 cut(s) | 1025, 2088 |
| Bme18I | GGWCC | 8 cut(s) | 282, 403, 460, 472, 720, 754, 3844, 3983 |
| BmeT110I | CYCGRG | 1 cut(s) | 945 |
| BmgBI | CACGTC | 2 cut(s) | 246, 792 |
| BmrI | ACTGGG | 2 cut(s) | 2409, 3646 |
| BmtI | GCTAGC | 1 cut(s) | 1586 |
| BmuI | ACTGGG | 2 cut(s) | 2409, 3646 |
| BpiI | GAAGAC | 2 cut(s) | 1341, 1917 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 575, 607 |
| BpmI | CTGGAG | 5 cut(s) | 767, 1452, 1839, 2490, 2679 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3308 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1025, 2088 |
| BpuEI | CTTGAG | 1 cut(s) | 377 |
| BpuMI | CCSGG | 2 cut(s) | 134, 2892 |
| BsaAI | YACGTR | 2 cut(s) | 1063, 3506 |
| BsaHI | GRCGYC | 5 cut(s) | 26, 32, 105, 573, 1036 |
| BsaI | GGTCTC | 1 cut(s) | 2466 |
| BsaWI | WCCGGW | 3 cut(s) | 276, 512, 2439 |
| Bse118I | RCCGGY | 5 cut(s) | 137, 350, 400, 548, 1390 |
| Bse3DI | GCAATG | 5 cut(s) | 860, 938, 1480, 2334, 3819 |
| BseAI | TCCGGA | 2 cut(s) | 512, 2439 |
| BseGI | GGATG | 7 cut(s) | 597, 973, 1354, 1369, 2138, 2395, 3025 |
| BseMI | GCAATG | 5 cut(s) | 860, 938, 1480, 2334, 3819 |
| BseMII | CTCAG | 5 cut(s) | 1814, 2187, 3227, 3322, 3465 |
| BseSI | GKGCMC | 2 cut(s) | 1062, 1906 |
| BseX3I | CGGCCG | 3 cut(s) | 135, 298, 550 |
| BseYI | CCCAGC | 4 cut(s) | 51, 77, 468, 782 |
| BsgI | GTGCAG | 2 cut(s) | 3528, 3732 |
| Bsh1236I | CGCG | 5 cut(s) | 303, 578, 606, 833, 3665 |
| Bsh1285I | CGRYCG | 6 cut(s) | 138, 301, 358, 553, 1493, 3429 |
| BshNI | GGYRCC | 2 cut(s) | 1035, 1941 |
| BsiEI | CGRYCG | 6 cut(s) | 138, 301, 358, 553, 1493, 3429 |
| BsiHKAI | GWGCWC | 4 cut(s) | 791, 1062, 1906, 2233 |
| BsiHKCI | CYCGRG | 1 cut(s) | 945 |
| BslFI | GGGAC | 8 cut(s) | 68, 767, 1094, 1756, 2149, 2375, 2739, 3996 |
| BsmAI | GTCTC | 6 cut(s) | 190, 674, 911, 2466, 3183, 3543 |
| BsmBI | CGTCTC | 3 cut(s) | 190, 674, 911 |
| BsmFI | GGGAC | 8 cut(s) | 68, 767, 1094, 1756, 2149, 2375, 2739, 3996 |
| BsmI | GAATGC | 3 cut(s) | 128, 731, 2404 |
| Bso31I | GGTCTC | 1 cut(s) | 2466 |
| BsoBI | CYCGRG | 1 cut(s) | 945 |
| Bsp1286I | GDGCHC | 7 cut(s) | 11, 791, 1062, 1906, 2174, 2233, 3787 |
| Bsp13I | TCCGGA | 2 cut(s) | 512, 2439 |
| Bsp1407I | TGTACA | 1 cut(s) | 3409 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1025, 2088 |
| Bsp19I | CCATGG | 1 cut(s) | 3365 |
| Bsp68I | TCGCGA | 1 cut(s) | 833 |
| BspCNI | CTCAG | 5 cut(s) | 1813, 2186, 3228, 3321, 3466 |
| BspEI | TCCGGA | 2 cut(s) | 512, 2439 |
| BspFNI | CGCG | 5 cut(s) | 303, 578, 606, 833, 3665 |
| BspMAI | CTGCAG | 1 cut(s) | 3448 |
| BspMI | ACCTGC | 1 cut(s) | 2092 |
| BspOI | GCTAGC | 1 cut(s) | 1586 |
| BspT107I | GGYRCC | 2 cut(s) | 1035, 1941 |
| BspTI | CTTAAG | 1 cut(s) | 1529 |
| BspTNI | GGTCTC | 1 cut(s) | 2466 |
| BsrBI | CCGCTC | 3 cut(s) | 168, 289, 823 |
| BsrDI | GCAATG | 5 cut(s) | 860, 938, 1480, 2334, 3819 |
| BsrFI | RCCGGY | 5 cut(s) | 137, 350, 400, 548, 1390 |
| BsrGI | TGTACA | 1 cut(s) | 3409 |
| BssAI | RCCGGY | 5 cut(s) | 137, 350, 400, 548, 1390 |
| BssNI | GRCGYC | 5 cut(s) | 26, 32, 105, 573, 1036 |
| BssSI | CACGAG | 1 cut(s) | 3413 |
| BssT1I | CCWWGG | 4 cut(s) | 1662, 2799, 3298, 3365 |
| Bst2BI | CACGAG | 1 cut(s) | 3413 |
| Bst6I | CTCTTC | 5 cut(s) | 1074, 2867, 3268, 3384, 3546 |
| BstACI | GRCGYC | 5 cut(s) | 26, 32, 105, 573, 1036 |
| BstAFI | CTTAAG | 1 cut(s) | 1529 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3809 |
| BstAUI | TGTACA | 1 cut(s) | 3409 |
| BstBAI | YACGTR | 2 cut(s) | 1063, 3506 |
| BstC8I | GCNNGC | 5 cut(s) | 62, 139, 352, 1584, 3883 |
| BstDSI | CCRYGG | 3 cut(s) | 1212, 1621, 3365 |
| BstEII | GGTNACC | 1 cut(s) | 2951 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1936 |
| BstF5I | GGATG | 7 cut(s) | 597, 973, 1354, 1369, 2138, 2395, 3025 |
| BstFNI | CGCG | 5 cut(s) | 303, 578, 606, 833, 3665 |
| BstH2I | RGCGCY | 1 cut(s) | 1039 |
| BstHHI | GCGC | 2 cut(s) | 580, 1038 |
| BstMAI | GTCTC | 6 cut(s) | 190, 674, 911, 2466, 3183, 3543 |
| BstMCI | CGRYCG | 6 cut(s) | 138, 301, 358, 553, 1493, 3429 |
| BstNSI | RCATGY | 3 cut(s) | 64, 2798, 3755 |
| BstPI | GGTNACC | 1 cut(s) | 2951 |
| BstSFI | CTRYAG | 3 cut(s) | 1416, 3444, 3624 |
| BstSLI | GKGCMC | 2 cut(s) | 1062, 1906 |
| BstUI | CGCG | 5 cut(s) | 303, 578, 606, 833, 3665 |
| BstV2I | GAAGAC | 2 cut(s) | 1341, 1917 |
| BstX2I | RGATCY | 6 cut(s) | 95, 979, 2180, 2732, 2914, 3713 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 892 |
| BstYI | RGATCY | 6 cut(s) | 95, 979, 2180, 2732, 2914, 3713 |
| BstZI | CGGCCG | 3 cut(s) | 135, 298, 550 |
| BsuI | GTATCC | 1 cut(s) | 2447 |
| BtgI | CCRYGG | 3 cut(s) | 1212, 1621, 3365 |
| BtgZI | GCGATG | 1 cut(s) | 355 |
| BtrI | CACGTC | 2 cut(s) | 246, 792 |
| BtsCI | GGATG | 7 cut(s) | 597, 973, 1354, 1369, 2138, 2395, 3025 |
| BtsI | GCAGTG | 3 cut(s) | 736, 1578, 3858 |
| BtsIMutI | CAGTG | 8 cut(s) | 736, 1380, 1413, 1578, 2639, 2914, 3192, 3858 |
| BtuMI | TCGCGA | 1 cut(s) | 833 |
| BveI | ACCTGC | 1 cut(s) | 2092 |
| Cac8I | GCNNGC | 5 cut(s) | 62, 139, 352, 1584, 3883 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3269, 3683 |
| CfoI | GCGC | 2 cut(s) | 580, 1038 |
| Cfr10I | RCCGGY | 5 cut(s) | 137, 350, 400, 548, 1390 |
| CpoI | CGGWCCG | 1 cut(s) | 720 |
| CseI | GACGC | 5 cut(s) | 34, 581, 622, 928, 3671 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2628, 2663, 2781, 2816 |
| CspI | CGGWCCG | 1 cut(s) | 720 |
| DinI | GGCGCC | 1 cut(s) | 1037 |
| DraIII | CACNNNGTG | 2 cut(s) | 868, 3839 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 31, 3592 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 31, 3592 |
| EaeI | YGGCCR | 7 cut(s) | 135, 298, 345, 550, 759, 1134, 2254 |
| EagI | CGGCCG | 3 cut(s) | 135, 298, 550 |
| Eam1104I | CTCTTC | 5 cut(s) | 1074, 2867, 3268, 3384, 3546 |
| EarI | CTCTTC | 5 cut(s) | 1074, 2867, 3268, 3384, 3546 |
| EciI | GGCGGA | 4 cut(s) | 88, 217, 377, 590 |
| EclXI | CGGCCG | 3 cut(s) | 135, 298, 550 |
| Eco130I | CCWWGG | 4 cut(s) | 1662, 2799, 3298, 3365 |
| Eco147I | AGGCCT | 1 cut(s) | 2878 |
| Eco24I | GRGCYC | 3 cut(s) | 11, 2174, 3787 |
| Eco31I | GGTCTC | 1 cut(s) | 2466 |
| Eco47I | GGWCC | 8 cut(s) | 282, 403, 460, 472, 720, 754, 3844, 3983 |
| Eco52I | CGGCCG | 3 cut(s) | 135, 298, 550 |
| Eco57I | CTGAAG | 9 cut(s) | 695, 761, 1344, 1353, 1404, 1538, 1551, 2257, 3132 |
| Eco88I | CYCGRG | 1 cut(s) | 945 |
| Eco91I | GGTNACC | 1 cut(s) | 2951 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1936 |
| EcoO109I | RGGNCCY | 3 cut(s) | 460, 754, 1328 |
| EcoO65I | GGTNACC | 1 cut(s) | 2951 |
| EcoRI | GAATTC | 1 cut(s) | 2557 |
| EcoT14I | CCWWGG | 4 cut(s) | 1662, 2799, 3298, 3365 |
| EcoT22I | ATGCAT | 1 cut(s) | 2155 |
| EcoT38I | GRGCYC | 3 cut(s) | 11, 2174, 3787 |
| EgeI | GGCGCC | 1 cut(s) | 1037 |
| EheI | GGCGCC | 1 cut(s) | 1037 |
| ErhI | CCWWGG | 4 cut(s) | 1662, 2799, 3298, 3365 |
| Esp3I | CGTCTC | 3 cut(s) | 190, 674, 911 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1523, 1555, 1912, 1944 |
| FaqI | GGGAC | 8 cut(s) | 68, 767, 1094, 1756, 2149, 2375, 2739, 3996 |
| FauI | CCCGC | 6 cut(s) | 173, 294, 452, 629, 828, 3658 |
| FauNDI | CATATG | 2 cut(s) | 3776, 4072 |
| FbaI | TGATCA | 1 cut(s) | 1186 |
| FokI | GGATG | 7 cut(s) | 584, 980, 1361, 1376, 2125, 2402, 3032 |
| FriOI | GRGCYC | 3 cut(s) | 11, 2174, 3787 |
| FspBI | CTAG | 5 cut(s) | 1583, 1776, 2018, 2121, 3380 |
| GlaI | GCGC | 2 cut(s) | 579, 1037 |
| GsaI | CCCAGC | 4 cut(s) | 55, 81, 472, 786 |
| GsuI | CTGGAG | 5 cut(s) | 767, 1452, 1839, 2490, 2679 |
| HaeII | RGCGCY | 1 cut(s) | 1039 |
| HgaI | GACGC | 5 cut(s) | 34, 581, 622, 928, 3671 |
| HhaI | GCGC | 2 cut(s) | 580, 1038 |
| Hin1I | GRCGYC | 5 cut(s) | 26, 32, 105, 573, 1036 |
| Hin6I | GCGC | 2 cut(s) | 578, 1036 |
| HinP1I | GCGC | 2 cut(s) | 578, 1036 |
| HindIII | AAGCTT | 1 cut(s) | 2203 |
| HphI | GGTGA | 9 cut(s) | 12, 259, 658, 2448, 2873, 2963, 3064, 3113, 4025 |
| Hpy166II | GTNNAC | 8 cut(s) | 36, 282, 1060, 1904, 3055, 3356, 3410, 3412 |
| Hpy8I | GTNNAC | 8 cut(s) | 36, 282, 1060, 1904, 3055, 3356, 3410, 3412 |
| Hsp92I | GRCGYC | 5 cut(s) | 26, 32, 105, 573, 1036 |
| HspAI | GCGC | 2 cut(s) | 578, 1036 |
| KasI | GGCGCC | 1 cut(s) | 1035 |
| Kpn2I | TCCGGA | 2 cut(s) | 512, 2439 |
| KpnI | GGTACC | 1 cut(s) | 1945 |
| KroI | GCCGGC | 2 cut(s) | 137, 350 |
| KroNI | GCCGGC | 2 cut(s) | 139, 352 |
| Ksp22I | TGATCA | 1 cut(s) | 1186 |
| LmnI | GCTCC | 8 cut(s) | 69, 149, 294, 335, 786, 889, 1962, 2660 |
| MaeI | CTAG | 5 cut(s) | 1583, 1776, 2018, 2121, 3380 |
| MbiI | CCGCTC | 3 cut(s) | 168, 289, 823 |
| MfeI | CAATTG | 2 cut(s) | 1095, 2822 |
| MflI | RGATCY | 6 cut(s) | 95, 979, 2180, 2732, 2914, 3713 |
| MhlI | GDGCHC | 7 cut(s) | 11, 791, 1062, 1906, 2174, 2233, 3787 |
| MlsI | TGGCCA | 1 cut(s) | 1136 |
| MluNI | TGGCCA | 1 cut(s) | 1136 |
| Mly113I | GGCGCC | 1 cut(s) | 1036 |
| MlyI | GAGTC | 7 cut(s) | 410, 482, 786, 1990, 2041, 2531, 4055 |
| MmeI | TCCRAC | 3 cut(s) | 444, 619, 3871 |
| Mox20I | TGGCCA | 1 cut(s) | 1136 |
| Mph1103I | ATGCAT | 1 cut(s) | 2155 |
| MreI | CGCCGGCG | 1 cut(s) | 350 |
| MroI | TCCGGA | 2 cut(s) | 512, 2439 |
| MroNI | GCCGGC | 2 cut(s) | 137, 350 |
| MroXI | GAANNNNTTC | 2 cut(s) | 650, 3360 |
| MscI | TGGCCA | 1 cut(s) | 1136 |
| MseI | TTAA | 8 cut(s) | 1530, 1919, 2418, 2448, 2847, 2979, 3147, 3558 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1014, 1385 |
| Msp20I | TGGCCA | 1 cut(s) | 1136 |
| MspA1I | CMGCKG | 3 cut(s) | 555, 925, 3806 |
| MspCI | CTTAAG | 1 cut(s) | 1529 |
| MunI | CAATTG | 2 cut(s) | 1095, 2822 |
| Mva1269I | GAATGC | 3 cut(s) | 128, 731, 2404 |
| MvnI | CGCG | 5 cut(s) | 303, 578, 606, 833, 3665 |
| NaeI | GCCGGC | 2 cut(s) | 139, 352 |
| NarI | GGCGCC | 1 cut(s) | 1036 |
| NciI | CCSGG | 2 cut(s) | 134, 2892 |
| NcoI | CCATGG | 1 cut(s) | 3365 |
| NdeI | CATATG | 2 cut(s) | 3776, 4072 |
| NgoMIV | GCCGGC | 2 cut(s) | 137, 350 |
| NheI | GCTAGC | 1 cut(s) | 1582 |
| NmeAIII | GCCGAG | 2 cut(s) | 276, 3911 |
| NmuCI | GTSAC | 8 cut(s) | 265, 664, 874, 1241, 1573, 1843, 2267, 2951 |
| NruI | TCGCGA | 1 cut(s) | 833 |
| NsiI | ATGCAT | 1 cut(s) | 2155 |
| NspI | RCATGY | 3 cut(s) | 64, 2798, 3755 |
| OliI | CACNNNNGTG | 1 cut(s) | 1385 |
| PaeI | GCATGC | 1 cut(s) | 64 |
| PaqCI | CACCTGC | 1 cut(s) | 2092 |
| PasI | CCCWGGG | 1 cut(s) | 885 |
| PceI | AGGCCT | 1 cut(s) | 2878 |
| PciI | ACATGT | 1 cut(s) | 3751 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 99, 270, 378, 797 |
| PctI | GAATGC | 3 cut(s) | 128, 731, 2404 |
| PdiI | GCCGGC | 2 cut(s) | 139, 352 |
| PdmI | GAANNNNTTC | 2 cut(s) | 650, 3360 |
| PfoI | TCCNGGA | 4 cut(s) | 456, 2467, 2581, 2890 |
| Ple19I | CGATCG | 1 cut(s) | 1493 |
| PleI | GAGTC | 7 cut(s) | 410, 482, 785, 1990, 2041, 2531, 4055 |
| PluTI | GGCGCC | 1 cut(s) | 1039 |
| PpsI | GAGTC | 7 cut(s) | 410, 482, 785, 1990, 2041, 2531, 4055 |
| Ppu21I | YACGTR | 2 cut(s) | 1063, 3506 |
| PpuMI | RGGWCCY | 2 cut(s) | 460, 754 |
| PscI | ACATGT | 1 cut(s) | 3751 |
| Psp5II | RGGWCCY | 2 cut(s) | 460, 754 |
| PspEI | GGTNACC | 1 cut(s) | 2951 |
| PspFI | CCCAGC | 4 cut(s) | 51, 77, 468, 782 |
| PspPPI | RGGWCCY | 2 cut(s) | 460, 754 |
| PstI | CTGCAG | 1 cut(s) | 3448 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3269, 3683 |
| PsuI | RGATCY | 6 cut(s) | 95, 979, 2180, 2732, 2914, 3713 |
| PvuI | CGATCG | 1 cut(s) | 1493 |
| PvuII | CAGCTG | 2 cut(s) | 925, 3806 |
| RruI | TCGCGA | 1 cut(s) | 833 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1014, 1385 |
| Rsr2I | CGGWCCG | 1 cut(s) | 720 |
| RsrII | CGGWCCG | 1 cut(s) | 720 |
| SaqAI | TTAA | 8 cut(s) | 1530, 1919, 2418, 2448, 2847, 2979, 3147, 3558 |
| SchI | GAGTC | 7 cut(s) | 410, 482, 786, 1990, 2041, 2531, 4055 |
| SduI | GDGCHC | 7 cut(s) | 11, 791, 1062, 1906, 2174, 2233, 3787 |
| SfcI | CTRYAG | 3 cut(s) | 1416, 3444, 3624 |
| SfoI | GGCGCC | 1 cut(s) | 1037 |
| SgrAI | CRCCGGYG | 1 cut(s) | 350 |
| SinI | GGWCC | 8 cut(s) | 282, 403, 460, 472, 720, 754, 3844, 3983 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1014, 1385 |
| SmlI | CTYRAG | 2 cut(s) | 392, 1529 |
| SmoI | CTYRAG | 2 cut(s) | 392, 1529 |
| SphI | GCATGC | 1 cut(s) | 64 |
| SseBI | AGGCCT | 1 cut(s) | 2878 |
| SspDI | GGCGCC | 1 cut(s) | 1035 |
| SspI | AATATT | 2 cut(s) | 2377, 4019 |
| SspMI | CTAG | 5 cut(s) | 1583, 1776, 2018, 2121, 3380 |
| StuI | AGGCCT | 1 cut(s) | 2878 |
| StyI | CCWWGG | 4 cut(s) | 1662, 2799, 3298, 3365 |
| TaqI | TCGA | 6 cut(s) | 5, 159, 381, 414, 615, 2998 |
| TaqII | GACCGA | 2 cut(s) | 737, 3415 |
| TatI | WGTACW | 4 cut(s) | 1406, 2497, 2858, 3409 |
| Tru1I | TTAA | 8 cut(s) | 1530, 1919, 2418, 2448, 2847, 2979, 3147, 3558 |
| Tru9I | TTAA | 8 cut(s) | 1530, 1919, 2418, 2448, 2847, 2979, 3147, 3558 |
| TscAI | CASTG | 8 cut(s) | 736, 1387, 1420, 1578, 2646, 2914, 3199, 3865 |
| TseFI | GTSAC | 8 cut(s) | 265, 664, 874, 1241, 1573, 1843, 2267, 2951 |
| Tsp45I | GTSAC | 8 cut(s) | 265, 664, 874, 1241, 1573, 1843, 2267, 2951 |
| TspGWI | ACGGA | 8 cut(s) | 142, 262, 652, 698, 1949, 2512, 2741, 3749 |
| TspRI | CASTG | 8 cut(s) | 736, 1387, 1420, 1578, 2646, 2914, 3199, 3865 |
| Vha464I | CTTAAG | 1 cut(s) | 1529 |
| VneI | GTGCAC | 2 cut(s) | 1058, 1902 |
| VpaK11BI | GGWCC | 8 cut(s) | 282, 403, 460, 472, 720, 754, 3844, 3983 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1936 |
| XapI | RAATTY | 3 cut(s) | 1771, 2557, 3891 |
| XbaI | TCTAGA | 1 cut(s) | 1775 |
| XceI | RCATGY | 3 cut(s) | 64, 2798, 3755 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 892, 1977 |
| XmnI | GAANNNNTTC | 2 cut(s) | 650, 3360 |
| XspI | CTAG | 5 cut(s) | 1583, 1776, 2018, 2121, 3380 |
| ZraI | GACGTC | 2 cut(s) | 33, 106 |
| Zsp2I | ATGCAT | 1 cut(s) | 2155 |