Rroxscaffold_2G00153110

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006561
Physical Location & Seq
Forward (+)
89906569 .. 89916233
9665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00153110.1

Sequence Viewer

Length: 4185 bp
ATGTCGAGCCCAAGACCCTCACCGGCGCCGACGTCCACCGTCCAAGACTGCTGGGACTGCATGCTCCCTGGCCCACCCAGCCGCAACAACTTCGGATCCGCCGACGTCAGCCCCTCCGGCCTTCTCGCATTCCCGGCCGGCAGCTCCATCTCCGTCCTCGACACCCGCTCAATGCAGCTCGTCGTCTCCCTCCCTATGCCTCCCCCCACACAATCCCAATCCTCCTCCGCCGCCTCCACCGCCACGTCATCACTCTCCCCCTTCGTCACCTCCGTCCGGTGGACCCCGCTCCCTCTCGGCCGCGACCTCCTCTCCACCGAGCCTTCCAGCTCCCACCTCCTCCTGGCCGCCGGCGACCGCCAGGGCCGCATCGCCCTCCTCGACCTCCGCCTCAAGTCGCCGGTCCTCTGGTTCGACTCCGACACCAACAACAACTCCCGCCTCGCCGTCCAGGACCTCTGCTGGGTCCAGGCCCGACCCGACTCCTACCTCCTCGCCGCCATCTCCGGATTCTCCTCCCTCTCCCTCTACGCCTCCTCCACCGGCCGCTGCTTCTGGAAATACGACGCCGCGCCGGAGATTCTCTCCTGCATCCGCCGCGATCCCTTCGATTCCCGCCATTTCTGCGTCGTCGGACTCAAAGGCTTCTTGCTCTCCGTCACCGTTTTAGGCGAGACGGAGGACGAGGTGGTTATCAATGAGCTTCAGATTCGGACCGAATGCAGTGAGCTGCTGAAGCTGGAGAGGGACCTGGCCGGAGGAGGAGGAGGAGGAGTCGCCGGGAGCACGTCGTCGTCGGCTTCTGCGGCGTTCCCGCTCTACATCGCGAGGTTTGCTTTCTCGCCGCAATGGAGGCACATTGTGTTTGTGACGTTCCCCAGGGAGCTGGTGGTGTTTGATTTGCAGTATGAGACGCAGCTGTTTTCGGCTGCATTGCCTCGGGGGTGTGGGAAGTTTCTGGATGTGTTGCCAGATCCGAATAACGAGTTTCTCTACTGTGGTCATGTTGATGGGAGGCTTAGTACTTGGCGCCGAAAAGAAGGAGAACAGGTGCACATAATGTGTTCAATGGAAGAGTTGTTGCCCTCAATTGGCACATCTGTCCCTTCTCCATCAGTTCTTGCTCTGGCCATTTCCCAATCAGATTCGACCTTGCAAAACATCAGCAAGATATATTCTGATCAACCTGATTCTCCTTTCTCTGCCGTGGATTTTGATAATCCTTTTGATTTTTGTGACGAACCTGTTGTTCTCTCTAAAACCCATTTGATCTCCATTTCTGATGATGGCAAAATATGGAACTGGCTCTTGACTGCTGAAGGGCCTGAAGACAATCGCAAGGATGATAAAAACCTGGATGTGGTTTCTAATATCACTGAAGTGCTGGTTTCTGGAACCAGTACAAATACTGTAGTTTCTTCTACTGGAGGAGTTGAGATGGAAGCGAGTAAGCAATCAGAACAGAGCAATGGTGGCAGAAGCCGATCTTCAAGTTCTGCCATCAGCCATACAGAAATATCACTTAAGATTAGCTTAGTAGGACAGCTTCAGCTTCTTTCTTCAGCAGTGACTATGCTAGCTGTACCTTCGCCTTCTTCAACAGCTACTTTGGGCCGTGGGGGAAACTATCCTGTTGTAGCTGTTCCATTGGTTGCCTTGGGAACTCAAAGTGGGATAATTGATATTGTTGATGTTTCTGCCAATGCTGTCGCTGCAAGTTTTTCTGTTCATATCGGGACTGTTAGAGGATTACGATGGCTTGGAAATTCTAGACTGGTTTCATTTTCATACACTCAGGTAAGTGAAAAAACTGGAGGTTTTATCAACAGGCTAATTGTGACCTGTCTTAGAAGTGGCCTAAATAAACCATTTCGGGTTTTGCAAAAGCCTGAACGTGCACCTATAAGAGCTTTAAGGACTTCTTCCTCTGGAAGGTACCTTCTTATTTTGCTCCGTGATGCACCAGTAGAGGTTTGGGCTATGACAAAGACTCCTATAATGCTTAGATCACTAGCACTTCCATTTACGGTTTTGGAATGGACTCTCCCAACAGTTCCACGCCCTCCTCAAAATGCACCTGCTAAGCAATCATTAACCCCCACAGATGGAACATCTAGGACATCAGATGGGACATCCTCCTCTAATGCATCTTCTGATTCTAAGGGCTCAGATGGATCCCAAGATGACACTTCCGAAAGCTTTGCATTTGCACTATCAAATGGTGCTCTTGGTGTTTTTGAGGTTAATGGCCGAAGGATTCGTGACTTCAGACCAAAGTGGCCTTCTTCTTCATTTGTCTCATCTGATGGACTGATTACAGCAATGGCATACCGTTTGCCTCATGTGGTTATGGGGGACAGGTCGGGAAATATTCGCTGGTGGGATGTAACAACTGGGCATTCTTCTTCATTTAACACTCATAGAGAGGGTATCCGGAGAATTAAGTTCTCACCTGTTGTTCCTGGAGACCGTAGTAGGGGGCGTGTTGCTGTACTATTTTATGACAATACATTTTCCGTATTTGATCTTGACTCCCCAGACCCTTTAGCGAATTCTCTCTTACAGCCTCAATTTCCTGGAACCCTTGTTTTGGAACTTGATTGGTTGCCTTTGCGAACTGACAAGAATGATCCACTGTTATTGTGCATAGCTGGAGCTGATAGTAGCTTTCGCCTTGTTGAGATCAATATAATTGACCAAAAACTTGGTTTTGCACACCACCCCAGATCTATAAAAGAAAGGTTCCGTCCCATGCCTTTATGTTCTCCTATACTACTTCCCACACCACATGCCCTGGCACTACGCATGATCTTACAATTGGGTGTAAAGCCTTCCTGGTTTAATACTTGCAGTACAACTTTAGAGAAGAGGCCTCACCTCATTCCGGGAACTCCCAAGTCCAGTGAGGATCTTCGCAGTTACATGATGGATATACAAACTGTTGGTGACCCTGTTGTACCAGAATTGCTGCTTAAAGTATTAGAACCTTATCGAAAAGAGGGCTGCATACTGGATGACGAGAGGGCTAAATTATATGCAAAGGTGGTGAACAAAGGCTGTTCTGTGAGATTTGCCTTTGCTGCTGCAATTTTTGGTGAATCCTCTGAAGCTCTTTTCTGGCTGCAACTGCCTCATGCTCTTAACTATTTGATGAACAAGTCCATAAATAAGTCTCCACAGAAAGCCACTGTATCAGCATCAGTTCCAGAGCTTGATGATGCCTCTATGCTGAGTAGGATAACATCAAAAGGAAAATCAGTTTCTGGAAGAGAAAAGAAAGATGCAACAAGCCAAGGGCAGCTCAGGTTGATGGCTTTTGAACAAGAAGAACTCTGGGCAAATGCAAGTGAACGTATTCCATGGCACGAGAAGCTAGAGGGAGAAGAGGCTATCCAGAATCGTGTACACGAGCTTGTGTCGGTCGGGAACTTAGAAGCTGCAGTCAGTTTATTGCTATCCACTCCTCCTGAGAGCAAATACTTCTCTGCTAATGCTTTACGTGCAGTTGCTCTTTCTTCTGCTGTGTCAAAGTCTCTTCTTGAACTGGCTGTTAAGGTGGTTGCAGCCAACATGGTCAGGACTGACAGGTCGCTGTCGGGTACTCATCTTCTCTGTGCTGTAGGAAGGTATCAAGAGGCGTGTTCCCAGAATCTTATCCGGCTTGTATCAGGTTTGTATGGGGTGATACTTTTGTATGACCACTTATGCGTCTGTTTAGCTCATGATGTTTTGAGGGGGAAAAATAGATGGAGCAAATTACAAGACGCGGGGTGCTGGACAGATGCTGCTACTTTAGCTGCCACCCATTTGAAAGGATCTGATTATGCAAGGGTGTTGCTAAGATGGGCTGCACACGTCCTCCGTGCTGAACACAACATATGGAGGGCTCTGATTTTGTATGTTGCAGCTGGTGCAATGCAAGGGGCATTGGCAGCACTTCGTGAGGTCCAACAGCCTGACACTGCGGCTATGTTCATTCTTGCTTGCCGAGAAATTCATGCCACCATCATCTCTGAATCAGGAAACTCTGATGATGAATCCAAATCTTCAATCAAGGACAAGCTGCCACACTTGCCTGGGTTGGGACCAGAGAATGAAGATGTTATTGCAGTCGGTGAATATTTTGGGCAATACCAGAGAAAATTGGTGCATCTGTGCATGGACTCACAGCCATATGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1394

Amino Acids

151.86

Weight (kDa)

6.42

Isoelectric Point (pI)

55.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR11_1st PF23751 24 - 516 5.8e-244 WDR11 first beta-propeller
Beta-prop_WDR11_2nd PF23752 518 - 918 3e-227 WDR11 second beta-propeller
TPR_WDR11 PF23753 946 - 1216 1.9e-142 WDR11 TPR domain
TPR_WDR11 PF23753 1248 - 1386 1.4e-69 WDR11 TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2086
AasI GACNNNNNNGTC 1 cut(s) 3586
AatII GACGTC 2 cut(s) 35, 108
Acc36I ACCTGC 1 cut(s) 2086
Acc65I GGTACC 1 cut(s) 1935
AccB1I GGYRCC 3 cut(s) 25, 1029, 1935
AccBSI CCGCTC 3 cut(s) 168, 289, 817
AccII CGCG 5 cut(s) 303, 572, 600, 827, 3767
AccIII TCCGGA 2 cut(s) 506, 2433
AclWI GGATC 9 cut(s) 90, 103, 596, 968, 2169, 2182, 2624, 2916, 3823
AcoI YGGCCR 7 cut(s) 135, 298, 345, 544, 753, 1128, 2248
AcsI RAATTY 3 cut(s) 1765, 2551, 3993
AcuI CTGAAG 9 cut(s) 689, 755, 1338, 1347, 1398, 1532, 1545, 2251, 3126
AcyI GRCGYC 5 cut(s) 26, 32, 105, 567, 1030
AdeI CACNNNGTG 2 cut(s) 862, 3941
AfaI GTAC 9 cut(s) 1024, 1402, 1584, 1937, 2493, 2854, 2958, 3405, 3601
AflII CTTAAG 1 cut(s) 1523
AflIII ACRYGT 1 cut(s) 3853
AgsI TTSAA 7 cut(s) 1068, 1491, 1599, 3320, 3542, 3811, 4050
AjiI CACGTC 3 cut(s) 246, 789, 3856
AjuI GAANNNNNNNTTGG 2 cut(s) 2266, 2298
AleI CACNNNNGTG 1 cut(s) 1379
Alw21I GWGCWC 4 cut(s) 788, 1056, 1900, 2227
Alw26I GTCTC 7 cut(s) 190, 668, 905, 2302, 2460, 3177, 3537
Alw44I GTGCAC 2 cut(s) 1052, 1896
AlwI GGATC 9 cut(s) 90, 103, 596, 968, 2169, 2182, 2624, 2916, 3823
AlwNI CAGNNNCTG 2 cut(s) 3263, 3785
Ama87I CYCGRG 1 cut(s) 939
Aor13HI TCCGGA 2 cut(s) 506, 2433
ApaLI GTGCAC 2 cut(s) 1052, 1896
ApoI RAATTY 3 cut(s) 1765, 2551, 3993
Asp700I GAANNNNTTC 1 cut(s) 3354
Asp718I GGTACC 1 cut(s) 1935
AspLEI GCGC 3 cut(s) 28, 574, 1032
AsuC2I CCSGG 3 cut(s) 134, 781, 2886
AsuNHI GCTAGC 1 cut(s) 1576
AvaI CYCGRG 1 cut(s) 939
AvaII GGWCC 8 cut(s) 282, 403, 454, 466, 714, 748, 3946, 4085
BaeGI GKGCMC 2 cut(s) 1056, 1900
BaeI ACNNNNGTAYC 2 cut(s) 3677, 3710
BalI TGGCCA 1 cut(s) 1130
BamHI GGATCC 2 cut(s) 95, 2174
BanI GGYRCC 3 cut(s) 25, 1029, 1935
BanII GRGCYC 3 cut(s) 11, 2168, 3889
BarI GAAGNNNNNNTAC 2 cut(s) 1530, 1562
BauI CACGAG 2 cut(s) 3365, 3407
BbsI GAAGAC 1 cut(s) 1335
Bbv12I GWGCWC 4 cut(s) 788, 1056, 1900, 2227
BceAI ACGGC 3 cut(s) 431, 1190, 1599
BcgI CGANNNNNNTGC 4 cut(s) 73, 107, 2183, 2217
BciVI GTATCC 1 cut(s) 2441
BclI TGATCA 1 cut(s) 1180
BcnI CCSGG 3 cut(s) 134, 781, 2886
BcoDI GTCTC 7 cut(s) 190, 668, 905, 2302, 2460, 3177, 3537
BfaI CTAG 5 cut(s) 1577, 1770, 2012, 2115, 3374
BfmI CTRYAG 3 cut(s) 1410, 3438, 3618
BfoI RGCGCY 2 cut(s) 29, 1033
BfrI CTTAAG 1 cut(s) 1523
BfuAI ACCTGC 1 cut(s) 2086
BfuI GTATCC 1 cut(s) 2441
BglI GCCNNNNNGGC 1 cut(s) 117
BglII AGATCT 1 cut(s) 2726
BlpI GCTNAGC 1 cut(s) 2082
BmcAI AGTACT 1 cut(s) 1024
Bme18I GGWCC 8 cut(s) 282, 403, 454, 466, 714, 748, 3946, 4085
BmeT110I CYCGRG 1 cut(s) 939
BmgBI CACGTC 3 cut(s) 246, 789, 3856
BmrI ACTGGG 1 cut(s) 2403
BmsI GCATC 9 cut(s) 378, 600, 1948, 2156, 3206, 3208, 3271, 3772, 4159
BmtI GCTAGC 1 cut(s) 1580
BmuI ACTGGG 1 cut(s) 2403
BpiI GAAGAC 1 cut(s) 1335
BplI GAGNNNNNCTC 2 cut(s) 569, 601
BpmI CTGGAG 5 cut(s) 761, 1446, 1833, 2484, 2673
Bpu10I CCTNAGC 1 cut(s) 3302
Bpu1102I GCTNAGC 1 cut(s) 2082
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 3 cut(s) 134, 781, 2886
BsaAI YACGTR 1 cut(s) 3500
BsaHI GRCGYC 5 cut(s) 26, 32, 105, 567, 1030
BsaI GGTCTC 1 cut(s) 2460
BsaWI WCCGGW 3 cut(s) 276, 506, 2433
Bse118I RCCGGY 5 cut(s) 22, 137, 350, 400, 542
Bse3DI GCAATG 5 cut(s) 854, 932, 1474, 2328, 3921
BseAI TCCGGA 2 cut(s) 506, 2433
BseGI GGATG 7 cut(s) 591, 967, 1348, 1363, 2132, 2389, 3019
BseMI GCAATG 5 cut(s) 854, 932, 1474, 2328, 3921
BseMII CTCAG 5 cut(s) 1808, 2181, 3221, 3316, 3459
BseSI GKGCMC 2 cut(s) 1056, 1900
BseX3I CGGCCG 3 cut(s) 135, 298, 544
BseYI CCCAGC 3 cut(s) 51, 77, 462
BsgI GTGCAG 2 cut(s) 3522, 3834
Bsh1236I CGCG 5 cut(s) 303, 572, 600, 827, 3767
Bsh1285I CGRYCG 5 cut(s) 138, 301, 358, 547, 3423
BshNI GGYRCC 3 cut(s) 25, 1029, 1935
BsiEI CGRYCG 5 cut(s) 138, 301, 358, 547, 3423
BsiHKAI GWGCWC 4 cut(s) 788, 1056, 1900, 2227
BsiHKCI CYCGRG 1 cut(s) 939
BslFI GGGAC 8 cut(s) 68, 761, 1088, 1750, 2143, 2369, 2733, 4098
BsmAI GTCTC 7 cut(s) 190, 668, 905, 2302, 2460, 3177, 3537
BsmBI CGTCTC 3 cut(s) 190, 668, 905
BsmFI GGGAC 8 cut(s) 68, 761, 1088, 1750, 2143, 2369, 2733, 4098
BsmI GAATGC 3 cut(s) 128, 725, 2398
Bso31I GGTCTC 1 cut(s) 2460
BsoBI CYCGRG 1 cut(s) 939
Bsp1286I GDGCHC 7 cut(s) 11, 788, 1056, 1900, 2168, 2227, 3889
Bsp13I TCCGGA 2 cut(s) 506, 2433
Bsp1407I TGTACA 1 cut(s) 3403
Bsp1720I GCTNAGC 1 cut(s) 2082
Bsp19I CCATGG 1 cut(s) 3359
Bsp68I TCGCGA 1 cut(s) 827
BspCNI CTCAG 5 cut(s) 1807, 2180, 3222, 3315, 3460
BspEI TCCGGA 2 cut(s) 506, 2433
BspFNI CGCG 5 cut(s) 303, 572, 600, 827, 3767
BspHI TCATGA 1 cut(s) 3721
BspMAI CTGCAG 1 cut(s) 3442
BspMI ACCTGC 1 cut(s) 2086
BspOI GCTAGC 1 cut(s) 1580
BspPI GGATC 9 cut(s) 90, 103, 596, 968, 2169, 2182, 2624, 2916, 3823
BspT107I GGYRCC 3 cut(s) 25, 1029, 1935
BspTI CTTAAG 1 cut(s) 1523
BspTNI GGTCTC 1 cut(s) 2460
BsrBI CCGCTC 3 cut(s) 168, 289, 817
BsrDI GCAATG 5 cut(s) 854, 932, 1474, 2328, 3921
BsrFI RCCGGY 5 cut(s) 22, 137, 350, 400, 542
BsrGI TGTACA 1 cut(s) 3403
BssAI RCCGGY 5 cut(s) 22, 137, 350, 400, 542
BssNI GRCGYC 5 cut(s) 26, 32, 105, 567, 1030
BssSI CACGAG 2 cut(s) 3365, 3407
BssT1I CCWWGG 3 cut(s) 1656, 3292, 3359
Bst2BI CACGAG 2 cut(s) 3365, 3407
Bst6I CTCTTC 5 cut(s) 1068, 2861, 3262, 3378, 3540
BstACI GRCGYC 5 cut(s) 26, 32, 105, 567, 1030
BstAFI CTTAAG 1 cut(s) 1523
BstAPI GCANNNNNTGC 1 cut(s) 3911
BstAUI TGTACA 1 cut(s) 3403
BstBAI YACGTR 1 cut(s) 3500
BstC8I GCNNGC 5 cut(s) 62, 139, 352, 1578, 3985
BstDSI CCRYGG 3 cut(s) 1206, 1615, 3359
BstEII GGTNACC 1 cut(s) 2945
BstENI CCTNNNNNAGG 1 cut(s) 1930
BstF5I GGATG 7 cut(s) 591, 967, 1348, 1363, 2132, 2389, 3019
BstFNI CGCG 5 cut(s) 303, 572, 600, 827, 3767
BstH2I RGCGCY 2 cut(s) 29, 1033
BstHHI GCGC 3 cut(s) 28, 574, 1032
BstMAI GTCTC 7 cut(s) 190, 668, 905, 2302, 2460, 3177, 3537
BstMCI CGRYCG 5 cut(s) 138, 301, 358, 547, 3423
BstNSI RCATGY 2 cut(s) 64, 2792
BstPI GGTNACC 1 cut(s) 2945
BstSFI CTRYAG 3 cut(s) 1410, 3438, 3618
BstSLI GKGCMC 2 cut(s) 1056, 1900
BstUI CGCG 5 cut(s) 303, 572, 600, 827, 3767
BstV2I GAAGAC 1 cut(s) 1335
BstX2I RGATCY 6 cut(s) 95, 973, 2174, 2726, 2908, 3815
BstXI CCANNNNNNTGG 2 cut(s) 886, 2705
BstYI RGATCY 6 cut(s) 95, 973, 2174, 2726, 2908, 3815
BstZI CGGCCG 3 cut(s) 135, 298, 544
BsuI GTATCC 1 cut(s) 2441
BtgI CCRYGG 3 cut(s) 1206, 1615, 3359
BtgZI GCGATG 2 cut(s) 355, 808
BtrI CACGTC 3 cut(s) 246, 789, 3856
BtsCI GGATG 7 cut(s) 591, 967, 1348, 1363, 2132, 2389, 3019
BtsI GCAGTG 3 cut(s) 730, 1572, 3960
BtsIMutI CAGTG 7 cut(s) 730, 1374, 1572, 2633, 2908, 3186, 3960
BtuMI TCGCGA 1 cut(s) 827
BveI ACCTGC 1 cut(s) 2086
Cac8I GCNNGC 5 cut(s) 62, 139, 352, 1578, 3985
CaiI CAGNNNCTG 2 cut(s) 3263, 3785
CciI TCATGA 1 cut(s) 3721
CfoI GCGC 3 cut(s) 28, 574, 1032
Cfr10I RCCGGY 5 cut(s) 22, 137, 350, 400, 542
CpoI CGGWCCG 1 cut(s) 714
CseI GACGC 5 cut(s) 575, 616, 922, 3697, 3773
Csp6I GTAC 9 cut(s) 1023, 1401, 1583, 1936, 2492, 2853, 2957, 3404, 3600
CspCI CAANNNNNGTGG 2 cut(s) 2622, 2657
CspI CGGWCCG 1 cut(s) 714
CviQI GTAC 9 cut(s) 1023, 1401, 1583, 1936, 2492, 2853, 2957, 3404, 3600
DinI GGCGCC 2 cut(s) 27, 1031
DraIII CACNNNGTG 2 cut(s) 862, 3941
DrdI GACNNNNNNGTC 1 cut(s) 3586
DseDI GACNNNNNNGTC 1 cut(s) 3586
EaeI YGGCCR 7 cut(s) 135, 298, 345, 544, 753, 1128, 2248
EagI CGGCCG 3 cut(s) 135, 298, 544
Eam1104I CTCTTC 5 cut(s) 1068, 2861, 3262, 3378, 3540
EarI CTCTTC 5 cut(s) 1068, 2861, 3262, 3378, 3540
EciI GGCGGA 4 cut(s) 88, 217, 377, 584
EclXI CGGCCG 3 cut(s) 135, 298, 544
Eco130I CCWWGG 3 cut(s) 1656, 3292, 3359
Eco147I AGGCCT 1 cut(s) 2872
Eco24I GRGCYC 3 cut(s) 11, 2168, 3889
Eco31I GGTCTC 1 cut(s) 2460
Eco47I GGWCC 8 cut(s) 282, 403, 454, 466, 714, 748, 3946, 4085
Eco52I CGGCCG 3 cut(s) 135, 298, 544
Eco57I CTGAAG 9 cut(s) 689, 755, 1338, 1347, 1398, 1532, 1545, 2251, 3126
Eco88I CYCGRG 1 cut(s) 939
Eco91I GGTNACC 1 cut(s) 2945
EcoNI CCTNNNNNAGG 1 cut(s) 1930
EcoO109I RGGNCCY 3 cut(s) 454, 748, 1322
EcoO65I GGTNACC 1 cut(s) 2945
EcoRI GAATTC 1 cut(s) 2551
EcoT14I CCWWGG 3 cut(s) 1656, 3292, 3359
EcoT22I ATGCAT 1 cut(s) 2149
EcoT38I GRGCYC 3 cut(s) 11, 2168, 3889
EgeI GGCGCC 2 cut(s) 27, 1031
EheI GGCGCC 2 cut(s) 27, 1031
ErhI CCWWGG 3 cut(s) 1656, 3292, 3359
Esp3I CGTCTC 3 cut(s) 190, 668, 905
FalI AAGNNNNNCTT 6 cut(s) 1471, 1503, 1517, 1549, 1906, 1938
FaqI GGGAC 8 cut(s) 68, 761, 1088, 1750, 2143, 2369, 2733, 4098
FauI CCCGC 6 cut(s) 173, 294, 446, 623, 822, 3760
FauNDI CATATG 2 cut(s) 3878, 4174
FbaI TGATCA 1 cut(s) 1180
FokI GGATG 7 cut(s) 578, 974, 1355, 1370, 2119, 2396, 3026
FriOI GRGCYC 3 cut(s) 11, 2168, 3889
FspBI CTAG 5 cut(s) 1577, 1770, 2012, 2115, 3374
GlaI GCGC 3 cut(s) 27, 573, 1031
GsaI CCCAGC 3 cut(s) 55, 81, 466
GsuI CTGGAG 5 cut(s) 761, 1446, 1833, 2484, 2673
HaeII RGCGCY 2 cut(s) 29, 1033
HgaI GACGC 5 cut(s) 575, 616, 922, 3697, 3773
HhaI GCGC 3 cut(s) 28, 574, 1032
Hin1I GRCGYC 5 cut(s) 26, 32, 105, 567, 1030
Hin6I GCGC 3 cut(s) 26, 572, 1030
HinP1I GCGC 3 cut(s) 26, 572, 1030
HindIII AAGCTT 1 cut(s) 2197
Hpy166II GTNNAC 8 cut(s) 36, 282, 1054, 1898, 3049, 3350, 3404, 3406
Hpy8I GTNNAC 8 cut(s) 36, 282, 1054, 1898, 3049, 3350, 3404, 3406
Hpy99I CGWCG 9 cut(s) 34, 107, 185, 569, 632, 635, 793, 796, 799
HpyCH4IV ACGT 9 cut(s) 32, 105, 245, 788, 872, 1894, 3352, 3499, 3855
HpySE526I ACGT 9 cut(s) 32, 105, 245, 788, 872, 1894, 3352, 3499, 3855
Hsp92I GRCGYC 5 cut(s) 26, 32, 105, 567, 1030
HspAI GCGC 3 cut(s) 26, 572, 1030
KasI GGCGCC 2 cut(s) 25, 1029
Kpn2I TCCGGA 2 cut(s) 506, 2433
KpnI GGTACC 1 cut(s) 1939
KroI GCCGGC 2 cut(s) 137, 350
KroNI GCCGGC 2 cut(s) 139, 352
Ksp22I TGATCA 1 cut(s) 1180
LmnI GCTCC 9 cut(s) 69, 149, 294, 335, 783, 883, 1956, 2654, 3750
LweI GCATC 9 cut(s) 378, 600, 1948, 2156, 3206, 3208, 3271, 3772, 4159
MaeI CTAG 5 cut(s) 1577, 1770, 2012, 2115, 3374
MaeII ACGT 9 cut(s) 32, 105, 245, 788, 872, 1894, 3352, 3499, 3855
MbiI CCGCTC 3 cut(s) 168, 289, 817
MfeI CAATTG 2 cut(s) 1089, 2816
MflI RGATCY 6 cut(s) 95, 973, 2174, 2726, 2908, 3815
MhlI GDGCHC 7 cut(s) 11, 788, 1056, 1900, 2168, 2227, 3889
MlsI TGGCCA 1 cut(s) 1130
MluNI TGGCCA 1 cut(s) 1130
Mly113I GGCGCC 2 cut(s) 26, 1030
MlyI GAGTC 8 cut(s) 410, 476, 630, 783, 1984, 2035, 2525, 4157
MmeI TCCRAC 3 cut(s) 444, 613, 3973
Mox20I TGGCCA 1 cut(s) 1130
Mph1103I ATGCAT 1 cut(s) 2149
MreI CGCCGGCG 1 cut(s) 350
MroI TCCGGA 2 cut(s) 506, 2433
MroNI GCCGGC 2 cut(s) 137, 350
MroXI GAANNNNTTC 1 cut(s) 3354
MscI TGGCCA 1 cut(s) 1130
MslI CAYNNNNRTG 2 cut(s) 1008, 1379
Msp20I TGGCCA 1 cut(s) 1130
MspA1I CMGCKG 3 cut(s) 549, 919, 3908
MspCI CTTAAG 1 cut(s) 1523
MunI CAATTG 2 cut(s) 1089, 2816
Mva1269I GAATGC 3 cut(s) 128, 725, 2398
MvnI CGCG 5 cut(s) 303, 572, 600, 827, 3767
NaeI GCCGGC 2 cut(s) 139, 352
NarI GGCGCC 2 cut(s) 26, 1030
NciI CCSGG 3 cut(s) 134, 781, 2886
NcoI CCATGG 1 cut(s) 3359
NdeI CATATG 2 cut(s) 3878, 4174
NgoMIV GCCGGC 2 cut(s) 137, 350
NheI GCTAGC 1 cut(s) 1576
NmeAIII GCCGAG 2 cut(s) 276, 4013
NmuCI GTSAC 8 cut(s) 265, 658, 868, 1235, 1567, 1837, 2261, 2945
NruI TCGCGA 1 cut(s) 827
NsiI ATGCAT 1 cut(s) 2149
NspI RCATGY 2 cut(s) 64, 2792
OliI CACNNNNGTG 1 cut(s) 1379
PaeI GCATGC 1 cut(s) 64
PagI TCATGA 1 cut(s) 3721
PaqCI CACCTGC 1 cut(s) 2086
PasI CCCWGGG 1 cut(s) 879
PceI AGGCCT 1 cut(s) 2872
PcsI WCGNNNNNNNCGW 3 cut(s) 99, 270, 378
PctI GAATGC 3 cut(s) 128, 725, 2398
PdiI GCCGGC 2 cut(s) 139, 352
PdmI GAANNNNTTC 1 cut(s) 3354
PfoI TCCNGGA 4 cut(s) 450, 2461, 2575, 2884
PleI GAGTC 8 cut(s) 410, 476, 630, 782, 1984, 2035, 2525, 4157
PluTI GGCGCC 2 cut(s) 29, 1033
PpsI GAGTC 8 cut(s) 410, 476, 630, 782, 1984, 2035, 2525, 4157
Ppu21I YACGTR 1 cut(s) 3500
PpuMI RGGWCCY 2 cut(s) 454, 748
Psp5II RGGWCCY 2 cut(s) 454, 748
PspEI GGTNACC 1 cut(s) 2945
PspFI CCCAGC 3 cut(s) 51, 77, 462
PspPPI RGGWCCY 2 cut(s) 454, 748
PstI CTGCAG 1 cut(s) 3442
PstNI CAGNNNCTG 2 cut(s) 3263, 3785
PsuI RGATCY 6 cut(s) 95, 973, 2174, 2726, 2908, 3815
PvuII CAGCTG 2 cut(s) 919, 3908
RruI TCGCGA 1 cut(s) 827
RsaI GTAC 9 cut(s) 1024, 1402, 1584, 1937, 2493, 2854, 2958, 3405, 3601
RsaNI GTAC 9 cut(s) 1023, 1401, 1583, 1936, 2492, 2853, 2957, 3404, 3600
RseI CAYNNNNRTG 2 cut(s) 1008, 1379
Rsr2I CGGWCCG 1 cut(s) 714
RsrII CGGWCCG 1 cut(s) 714
ScaI AGTACT 1 cut(s) 1024
SchI GAGTC 8 cut(s) 410, 476, 630, 783, 1984, 2035, 2525, 4157
SduI GDGCHC 7 cut(s) 11, 788, 1056, 1900, 2168, 2227, 3889
SfaNI GCATC 9 cut(s) 378, 600, 1948, 2156, 3206, 3208, 3271, 3772, 4159
SfcI CTRYAG 3 cut(s) 1410, 3438, 3618
SfoI GGCGCC 2 cut(s) 27, 1031
SgrAI CRCCGGYG 2 cut(s) 22, 350
SinI GGWCC 8 cut(s) 282, 403, 454, 466, 714, 748, 3946, 4085
SmiMI CAYNNNNRTG 2 cut(s) 1008, 1379
SmlI CTYRAG 2 cut(s) 392, 1523
SmoI CTYRAG 2 cut(s) 392, 1523
SphI GCATGC 1 cut(s) 64
SseBI AGGCCT 1 cut(s) 2872
SspDI GGCGCC 2 cut(s) 25, 1029
SspI AATATT 2 cut(s) 2371, 4121
SspMI CTAG 5 cut(s) 1577, 1770, 2012, 2115, 3374
StuI AGGCCT 1 cut(s) 2872
StyI CCWWGG 3 cut(s) 1656, 3292, 3359
TaiI ACGT 9 cut(s) 35, 108, 248, 791, 875, 1897, 3355, 3502, 3858
TaqI TCGA 7 cut(s) 5, 159, 381, 414, 609, 1148, 2992
TaqII GACCGA 2 cut(s) 731, 3409
TatI WGTACW 5 cut(s) 1022, 1400, 2491, 2852, 3403
TscAI CASTG 7 cut(s) 730, 1381, 1572, 2640, 2908, 3193, 3967
TseFI GTSAC 8 cut(s) 265, 658, 868, 1235, 1567, 1837, 2261, 2945
Tsp45I GTSAC 8 cut(s) 265, 658, 868, 1235, 1567, 1837, 2261, 2945
TspGWI ACGGA 8 cut(s) 142, 262, 646, 692, 1943, 2506, 2735, 3851
TspRI CASTG 7 cut(s) 730, 1381, 1572, 2640, 2908, 3193, 3967
Vha464I CTTAAG 1 cut(s) 1523
VneI GTGCAC 2 cut(s) 1052, 1896
VpaK11BI GGWCC 8 cut(s) 282, 403, 454, 466, 714, 748, 3946, 4085
XagI CCTNNNNNAGG 1 cut(s) 1930
XapI RAATTY 3 cut(s) 1765, 2551, 3993
XbaI TCTAGA 1 cut(s) 1769
XceI RCATGY 2 cut(s) 64, 2792
XcmI CCANNNNNNNNNTGG 2 cut(s) 886, 1971
XmnI GAANNNNTTC 1 cut(s) 3354
XspI CTAG 5 cut(s) 1577, 1770, 2012, 2115, 3374
ZraI GACGTC 2 cut(s) 33, 106
ZrmI AGTACT 1 cut(s) 1024
Zsp2I ATGCAT 1 cut(s) 2149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.