Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018771

Physical Location & Seq

Genomic Coordinates Reverse (-)

4693996 .. 4694701

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016199

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCACTGATTCTGGTTTTTGCAACATGCATGAAGTGTTATGGTCCGAGGACTGGGATGGAGTCATTGCAACTCACTCGCACTCAAAGGCACTGGCCATGCTTCCGGTGTTATAATTATCGTAATGATTTTAATGACAACACAGCAGCAGCAGCAGCAGCACAACGGGCTAACCTCGCTGACGTTGTTCCTACTCTTGTGCATCTCAGGATGAGTACAAGTGCTCAGCTGAGGTCATTACCATATATTGTTGCCATGCTTTCCTCAGGCGATCAGGAATCAATCTTTTATCGTCCAGATGATAAACAAGCCGGTGCTGACAATGCACGGCGGCATTTTCATTCTGGGAACGTTGGAGATCACATTGCATTGCTGAAGGTTTACAATACATGGAAAGAGGCAAATAAATCGACTGAGTGGTGCTTCGGAAACTATATACAAGCTAGAAGCATGAGAAGCGCAAAAATTATTCTGGATCGACTTGAGTGGCTCTTGGAGAGGGTTGGAATTGAGCTAACCTCAATTAATCCCGTTGATTTAGAGCCTATGAAGGACATTTTATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031047 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

189

Amino Acids

21.42

Weight (kDa)

8.62

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018771)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06762
rosa_laevigata	RLG00000016199
rosa_multiflora	Rmu_sc0002270.1_g000026
rosa_rugosa	Rorug02G0015300
rosa_samantha	Rh2BG073600 Rh2DG060200 Rh2DG071700 Rh6BG121500 Rh6CG119900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
AciI	CCGC	1 cut(s)	331
AclI	AACGTT	1 cut(s)	351
AclWI	GGATC	1 cut(s)	483
AcoI	YGGCCR	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	395
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	53
AluBI	AGCT	3 cut(s)	229, 443, 514
AluI	AGCT	3 cut(s)	229, 443, 514
Alw21I	GWGCWC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	483
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	5 cut(s)	146, 149, 152, 155, 158
AseI	ATTAAT	1 cut(s)	525
AspLEI	GCGC	1 cut(s)	461
AspS9I	GGNCC	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	44
AxyI	CCTNAGG	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	226
BbvCI	CCTCAGC	1 cut(s)	230
BbvI	GCAGC	5 cut(s)	158, 161, 164, 167, 170
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	344
BcgI	CGANNNNNNTGC	4 cut(s)	59, 93, 390, 424
BfaI	CTAG	1 cut(s)	444
BisI	GCNGC	6 cut(s)	147, 150, 153, 156, 159, 332
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	6 cut(s)	148, 151, 154, 157, 160, 333
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	211
BmuI	ACTGGG	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
Bpu10I	CCTNAGC	1 cut(s)	230
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	503
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	2 cut(s)	58, 98
Bse21I	CCTNAGG	1 cut(s)	265
Bse3DI	GCAATG	3 cut(s)	65, 363, 368
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	2 cut(s)	63, 216
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	3 cut(s)	65, 363, 368
BseMII	CTCAG	5 cut(s)	220, 221, 239, 279, 405
BseNI	ACTGG	2 cut(s)	58, 98
BseXI	GCAGC	5 cut(s)	158, 161, 164, 167, 170
BshFI	GGCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	226
BsiSI	CCGG	2 cut(s)	106, 312
BslI	CCNNNNNNNGG	1 cut(s)	53
BsnI	GGCC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	3 cut(s)	271, 358, 475
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	1 cut(s)	331
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	5 cut(s)	219, 222, 238, 278, 406
BspPI	GGATC	1 cut(s)	483
BsrDI	GCAATG	3 cut(s)	65, 363, 368
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	2 cut(s)	58, 98
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	3 cut(s)	271, 358, 475
BstDEI	CTNAG	5 cut(s)	206, 225, 230, 265, 414
BstF5I	GGATG	2 cut(s)	63, 216
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	3 cut(s)	274, 361, 478
BstMBI	GATC	3 cut(s)	271, 358, 475
BstMWI	GCNNNNNNNGC	7 cut(s)	152, 155, 158, 167, 176, 323, 456
BstNSI	RCATGY	1 cut(s)	30
BstV1I	GCAGC	5 cut(s)	158, 161, 164, 167, 170
Bsu36I	CCTNAGG	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	63, 216
BtsIMutI	CAGTG	2 cut(s)	5, 91
CfoI	GCGC	1 cut(s)	461
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	6 cut(s)	27, 31, 99, 256, 390, 451
CviJI	RGCY	8 cut(s)	97, 170, 229, 311, 443, 490, 514, 544
CviKI_1	RGCY	8 cut(s)	97, 170, 229, 311, 443, 490, 514, 544
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	5 cut(s)	206, 225, 230, 265, 414
DpnI	GATC	3 cut(s)	273, 360, 477
DpnII	GATC	3 cut(s)	271, 358, 475
EaeI	YGGCCR	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	395
Eco81I	CCTNAGG	1 cut(s)	265
EcoT22I	ATGCAT	1 cut(s)	32
FaeI	CATG	6 cut(s)	30, 34, 102, 259, 393, 454
FatI	CATG	6 cut(s)	26, 30, 98, 255, 389, 450
Fnu4HI	GCNGC	6 cut(s)	147, 150, 153, 156, 159, 332
FokI	GGATG	2 cut(s)	70, 223
Fsp4HI	GCNGC	6 cut(s)	147, 150, 153, 156, 159, 332
FspBI	CTAG	1 cut(s)	444
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	6 cut(s)	147, 150, 153, 156, 159, 332
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	2 cut(s)	106, 312
HhaI	GCGC	1 cut(s)	461
Hin1II	CATG	6 cut(s)	30, 34, 102, 259, 393, 454
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HinfI	GANTC	3 cut(s)	10, 62, 278
HpaII	CCGG	2 cut(s)	106, 312
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	2 cut(s)	48, 428
Hpy188III	TCNNGA	5 cut(s)	208, 275, 296, 473, 564
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	2 cut(s)	370, 544
HpyCH4IV	ACGT	2 cut(s)	183, 351
HpyCH4V	TGCA	6 cut(s)	23, 30, 70, 202, 326, 368
HpyF10VI	GCNNNNNNNGC	7 cut(s)	152, 155, 158, 167, 176, 323, 456
HpyF3I	CTNAG	5 cut(s)	206, 225, 230, 265, 414
HpySE526I	ACGT	2 cut(s)	183, 351
Hsp92II	CATG	6 cut(s)	30, 34, 102, 259, 393, 454
HspAI	GCGC	1 cut(s)	459
Kzo9I	GATC	3 cut(s)	271, 358, 475
Lsp1109I	GCAGC	5 cut(s)	158, 161, 164, 167, 170
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	2 cut(s)	183, 351
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	3 cut(s)	273, 360, 477
MboI	GATC	3 cut(s)	271, 358, 475
MhlI	GDGCHC	1 cut(s)	226
MlsI	TGGCCA	1 cut(s)	97
MluCI	AATT	4 cut(s)	115, 465, 507, 522
MluNI	TGGCCA	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	334, 484
MnlI	CCTC	7 cut(s)	42, 185, 225, 274, 391, 492, 529
Mox20I	TGGCCA	1 cut(s)	97
Mph1103I	ATGCAT	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	97
MseI	TTAA	2 cut(s)	132, 525
Msp20I	TGGCCA	1 cut(s)	97
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	2 cut(s)	106, 312
MwoI	GCNNNNNNNGC	7 cut(s)	152, 155, 158, 167, 176, 323, 456
NdeII	GATC	3 cut(s)	271, 358, 475
NlaIII	CATG	6 cut(s)	30, 34, 102, 259, 393, 454
NmuCI	GTSAC	1 cut(s)	3
NsiI	ATGCAT	1 cut(s)	32
NspI	RCATGY	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	10, 278
PkrI	GCNGC	6 cut(s)	148, 151, 154, 157, 160, 333
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PshBI	ATTAAT	1 cut(s)	525
PsiI	TTATAA	1 cut(s)	114
Psp1406I	AACGTT	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	132, 525
SatI	GCNGC	6 cut(s)	147, 150, 153, 156, 159, 332
Sau3AI	GATC	3 cut(s)	271, 358, 475
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	9 cut(s)	177, 186, 231, 236, 354, 381, 445, 516, 521
SfaNI	GCATC	1 cut(s)	211
SinI	GGWCC	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	4 cut(s)	115, 465, 507, 522
SsiI	CCGC	1 cut(s)	331
SspMI	CTAG	1 cut(s)	444
TaiI	ACGT	2 cut(s)	186, 354
TaqI	TCGA	2 cut(s)	410, 478
TasI	AATT	4 cut(s)	115, 465, 507, 522
TatI	WGTACW	1 cut(s)	215
TauI	GCSGC	1 cut(s)	334
TfiI	GAWTC	2 cut(s)	10, 278
Tru1I	TTAA	2 cut(s)	132, 525
Tru9I	TTAA	2 cut(s)	132, 525
TscAI	CASTG	2 cut(s)	12, 98
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	5 cut(s)	146, 149, 152, 155, 158
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	3 cut(s)	47, 329, 563
TspRI	CASTG	2 cut(s)	12, 98
VpaK11BI	GGWCC	1 cut(s)	44
VspI	ATTAAT	1 cut(s)	525
XceI	RCATGY	1 cut(s)	30
XspI	CTAG	1 cut(s)	444
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.