Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0018771

Physical Location & Seq

Genomic Coordinates Forward (+)

1284981 .. 1286281

Gene Structure 1301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0015300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGGACGGCGATTCTCCGATCACAGGATTGTCTTCGAGGTCGTTTCCGCCACGAAGCCCTAGCCTTAACCTTGACTTCACGCTCCGGATCGCGCCGGAGCCCCAATTTTTCTAACCCTAACCCTAACCCTAACTCCGGCTCTAATGGCTCGCAGTCTCGCCGCCGGAAGAGGAGTCCGGTCGGCGTTCAATCCAATCAACGCGATCGGATGGTGGCGAAGGTTCCGGGGAAGAACTTGGTGATGGGGCAGGTGAAGATCCTCAGGCGCGGCGAGGCGTTGAATCCGGCGACGGAAGATGAGATAGTGGTCGGAGTTGGTGGTAGAGATGATCGGAAGGAGAGGGAGAAGAGCGTGGAGTGTTCGGATTCGGATCTGGTGTTGGGATCCACGGACCGGTTGGGACCCGACCCGGAGACGGTGCAGAAGCAGATCAAGGTTGCAGAGTTCAAGGTGATGGATGCGATCTACGCTGGATCGGGAGCTTATTATGCTTCTCCGCCGCCGAGCTCCGTTCCGTTGCCTGCTTTTTTGGCTAAGAACGGAGCGGCGACCAGCGATCTGCGAAGGCTGCTGCGTCTCGATTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031047 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

197

Amino Acids

21.38

Weight (kDa)

10.18

Isoelectric Point (pI)

69.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018771)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06762
rosa_laevigata	RLG00000016199
rosa_multiflora	Rmu_sc0002270.1_g000026
rosa_rugosa	Rorug02G0015300
rosa_samantha	Rh2BG073600 Rh2DG060200 Rh2DG071700 Rh6BG121500 Rh6CG119900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	241
Acc36I	ACCTGC	1 cut(s)	241
AccBSI	CCGCTC	1 cut(s)	548
AccII	CGCG	3 cut(s)	94, 204, 270
AccIII	TCCGGA	1 cut(s)	86
AciI	CCGC	6 cut(s)	49, 163, 270, 500, 503, 548
AclWI	GGATC	6 cut(s)	97, 253, 381, 381, 394, 484
AfiI	CCNNNNNNNGG	4 cut(s)	25, 137, 396, 418
AgeI	ACCGGT	1 cut(s)	396
AgsI	TTSAA	3 cut(s)	191, 283, 451
AluBI	AGCT	2 cut(s)	485, 510
AluI	AGCT	2 cut(s)	485, 510
Alw21I	GWGCWC	1 cut(s)	512
Alw26I	GTCTC	3 cut(s)	162, 410, 584
AlwI	GGATC	6 cut(s)	97, 253, 381, 381, 394, 484
Aor13HI	TCCGGA	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	571, 574
AsiGI	ACCGGT	1 cut(s)	396
AspLEI	GCGC	2 cut(s)	96, 270
AspS9I	GGNCC	2 cut(s)	394, 404
AsuC2I	CCSGG	2 cut(s)	228, 413
AsuHPI	GGTGA	3 cut(s)	253, 265, 466
AvaII	GGWCC	2 cut(s)	394, 404
AxyI	CCTNAGG	1 cut(s)	263
BamHI	GGATCC	1 cut(s)	386
BanII	GRGCYC	2 cut(s)	104, 512
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	512
BbvI	GCAGC	2 cut(s)	558, 561
BccI	CCATC	3 cut(s)	205, 238, 451
BceAI	ACGGC	1 cut(s)	24
BcnI	CCSGG	2 cut(s)	228, 413
BcoDI	GTCTC	3 cut(s)	162, 410, 584
BfaI	CTAG	1 cut(s)	62
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	6 cut(s)	163, 271, 503, 549, 572, 575
BlsI	GCNGC	6 cut(s)	164, 272, 504, 550, 573, 576
Bme1390I	CCNGG	2 cut(s)	228, 413
Bme18I	GGWCC	2 cut(s)	394, 404
BmgT120I	GGNCC	2 cut(s)	394, 404
BmiI	GGNNCC	5 cut(s)	101, 225, 388, 405, 406
BmrFI	CCNGG	2 cut(s)	228, 413
BmsI	GCATC	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	26
BpuMI	CCSGG	2 cut(s)	228, 413
BsaBI	GATNNNNATC	1 cut(s)	372
BsaJI	CCNNGG	2 cut(s)	227, 390
BsaWI	WCCGGW	3 cut(s)	86, 178, 396
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 137, 396, 418
Bse118I	RCCGGY	1 cut(s)	396
Bse21I	CCTNAGG	1 cut(s)	263
Bse8I	GATNNNNATC	1 cut(s)	372
BseAI	TCCGGA	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	227, 390
BseGI	GGATG	2 cut(s)	216, 466
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	4 cut(s)	25, 137, 396, 418
BseMII	CTCAG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	187
BseXI	GCAGC	2 cut(s)	558, 561
BsgI	GTGCAG	1 cut(s)	443
Bsh1236I	CGCG	3 cut(s)	94, 204, 270
Bsh1285I	CGRYCG	2 cut(s)	183, 208
BshTI	ACCGGT	1 cut(s)	396
BsiEI	CGRYCG	2 cut(s)	183, 208
BsiHKAI	GWGCWC	1 cut(s)	512
BsiSI	CCGG	9 cut(s)	87, 97, 138, 166, 179, 227, 287, 397, 413
BslFI	GGGAC	2 cut(s)	19, 417
BslI	CCNNNNNNNGG	4 cut(s)	25, 137, 396, 418
BsmAI	GTCTC	3 cut(s)	162, 410, 584
BsmBI	CGTCTC	2 cut(s)	410, 584
BsmFI	GGGAC	2 cut(s)	19, 417
Bsp1286I	GDGCHC	2 cut(s)	104, 512
Bsp13I	TCCGGA	1 cut(s)	86
BspACI	CCGC	6 cut(s)	49, 163, 270, 500, 503, 548
BspCNI	CTCAG	1 cut(s)	276
BspEI	TCCGGA	1 cut(s)	86
BspFNI	CGCG	3 cut(s)	94, 204, 270
BspLI	GGNNCC	5 cut(s)	101, 225, 388, 405, 406
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	6 cut(s)	97, 253, 381, 381, 394, 484
BspQI	GCTCTTC	1 cut(s)	344
BsrBI	CCGCTC	1 cut(s)	548
BsrFI	RCCGGY	1 cut(s)	396
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	2 cut(s)	227, 390
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	2 cut(s)	164, 344
BstC8I	GCNNGC	2 cut(s)	152, 525
BstDEI	CTNAG	2 cut(s)	263, 537
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	2 cut(s)	216, 466
BstFNI	CGCG	3 cut(s)	94, 204, 270
BstHHI	GCGC	2 cut(s)	96, 270
BstMAI	GTCTC	3 cut(s)	162, 410, 584
BstMCI	CGRYCG	2 cut(s)	183, 208
BstMWI	GCNNNNNNNGC	5 cut(s)	147, 470, 491, 533, 571
BstSCI	CCNGG	2 cut(s)	226, 411
BstUI	CGCG	3 cut(s)	94, 204, 270
BstV1I	GCAGC	2 cut(s)	558, 561
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	3 cut(s)	258, 373, 386
BstYI	RGATCY	3 cut(s)	258, 373, 386
Bsu36I	CCTNAGG	1 cut(s)	263
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	216, 466
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	2 cut(s)	152, 525
CfoI	GCGC	2 cut(s)	96, 270
Cfr10I	RCCGGY	1 cut(s)	396
Cfr13I	GGNCC	2 cut(s)	394, 404
CpoI	CGGWCCG	1 cut(s)	394
CseI	GACGC	1 cut(s)	566
CspAI	ACCGGT	1 cut(s)	396
CspI	CGGWCCG	1 cut(s)	394
CviJI	RGCY	9 cut(s)	59, 65, 102, 141, 150, 485, 510, 536, 571
CviKI_1	RGCY	9 cut(s)	59, 65, 102, 141, 150, 485, 510, 536, 571
DdeI	CTNAG	2 cut(s)	263, 537
Eam1104I	CTCTTC	2 cut(s)	164, 344
EarI	CTCTTC	2 cut(s)	164, 344
EciI	GGCGGA	2 cut(s)	38, 489
Ecl136II	GAGCTC	1 cut(s)	510
Eco24I	GRGCYC	2 cut(s)	104, 512
Eco47I	GGWCC	2 cut(s)	394, 404
Eco53kI	GAGCTC	1 cut(s)	510
Eco81I	CCTNAGG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	404
EcoT38I	GRGCYC	2 cut(s)	104, 512
Esp3I	CGTCTC	2 cut(s)	410, 584
FaiI	YATR	1 cut(s)	492
FaqI	GGGAC	2 cut(s)	19, 417
Fnu4HI	GCNGC	6 cut(s)	163, 271, 503, 549, 572, 575
FokI	GGATG	2 cut(s)	223, 473
FriOI	GRGCYC	2 cut(s)	104, 512
Fsp4HI	GCNGC	6 cut(s)	163, 271, 503, 549, 572, 575
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	2 cut(s)	95, 269
GluI	GCNGC	6 cut(s)	163, 271, 503, 549, 572, 575
HapII	CCGG	9 cut(s)	87, 97, 138, 166, 179, 227, 287, 397, 413
HgaI	GACGC	1 cut(s)	566
HhaI	GCGC	2 cut(s)	96, 270
Hin6I	GCGC	2 cut(s)	94, 268
HinP1I	GCGC	2 cut(s)	94, 268
HinfI	GANTC	4 cut(s)	13, 175, 283, 368
HpaII	CCGG	9 cut(s)	87, 97, 138, 166, 179, 227, 287, 397, 413
HphI	GGTGA	3 cut(s)	253, 265, 466
Hpy188I	TCNGA	6 cut(s)	20, 210, 314, 336, 367, 373
Hpy188III	TCNNGA	3 cut(s)	87, 480, 581
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	3 cut(s)	214, 331, 561
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4V	TGCA	2 cut(s)	424, 443
HpyF10VI	GCNNNNNNNGC	5 cut(s)	147, 470, 491, 533, 571
HpyF3I	CTNAG	2 cut(s)	263, 537
HspAI	GCGC	2 cut(s)	94, 268
KflI	GGGWCCC	1 cut(s)	404
Kpn2I	TCCGGA	1 cut(s)	86
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	5 cut(s)	89, 99, 482, 515, 545
Lsp1109I	GCAGC	2 cut(s)	558, 561
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	1 cut(s)	62
MbiI	CCGCTC	1 cut(s)	548
MboII	GAAGA	6 cut(s)	26, 181, 244, 268, 308, 361
MflI	RGATCY	3 cut(s)	258, 373, 386
MhlI	GDGCHC	2 cut(s)	104, 512
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	184
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	5 cut(s)	32, 165, 268, 272, 336
MroI	TCCGGA	1 cut(s)	86
MseI	TTAA	1 cut(s)	68
MspI	CCGG	9 cut(s)	87, 97, 138, 166, 179, 227, 287, 397, 413
MspR9I	CCNGG	2 cut(s)	228, 413
MvnI	CGCG	3 cut(s)	94, 204, 270
MwoI	GCNNNNNNNGC	5 cut(s)	147, 470, 491, 533, 571
NciI	CCSGG	2 cut(s)	228, 413
NlaIV	GGNNCC	5 cut(s)	101, 225, 388, 405, 406
NmeAIII	GCCGAG	1 cut(s)	531
PaqCI	CACCTGC	1 cut(s)	241
PciSI	GCTCTTC	1 cut(s)	344
PfeI	GAWTC	3 cut(s)	13, 283, 368
PinAI	ACCGGT	1 cut(s)	396
PkrI	GCNGC	6 cut(s)	164, 272, 504, 550, 573, 576
Ple19I	CGATCG	1 cut(s)	208
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
PpuMI	RGGWCCY	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	512
Psp5II	RGGWCCY	1 cut(s)	404
PspN4I	GGNNCC	5 cut(s)	101, 225, 388, 405, 406
PspPI	GGNCC	2 cut(s)	394, 404
PspPPI	RGGWCCY	1 cut(s)	404
PsuI	RGATCY	3 cut(s)	258, 373, 386
PvuI	CGATCG	1 cut(s)	208
Rsr2I	CGGWCCG	1 cut(s)	394
RsrII	CGGWCCG	1 cut(s)	394
SacI	GAGCTC	1 cut(s)	512
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	6 cut(s)	163, 271, 503, 549, 572, 575
Sau96I	GGNCC	2 cut(s)	394, 404
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	2 cut(s)	228, 413
SduI	GDGCHC	2 cut(s)	104, 512
SetI	ASST	8 cut(s)	43, 74, 225, 255, 441, 456, 487, 512
SfaNI	GCATC	1 cut(s)	451
SinI	GGWCC	2 cut(s)	394, 404
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	6 cut(s)	49, 163, 270, 500, 503, 548
SspMI	CTAG	1 cut(s)	62
SstI	GAGCTC	1 cut(s)	512
StyD4I	CCNGG	2 cut(s)	226, 411
TaaI	ACNGT	1 cut(s)	421
TaqI	TCGA	2 cut(s)	37, 582
TasI	AATT	1 cut(s)	106
TauI	GCSGC	4 cut(s)	165, 273, 505, 551
TfiI	GAWTC	3 cut(s)	13, 283, 368
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TseI	GCWGC	2 cut(s)	571, 574
TspGWI	ACGGA	5 cut(s)	308, 407, 502, 507, 558
VpaK11BI	GGWCC	2 cut(s)	394, 404
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.