Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0018771

Physical Location & Seq

Genomic Coordinates Forward (+)

5564143 .. 5564738

Gene Structure 596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG073600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAAAAGAGCAAGAGATATCAGGGATCAACTTAAGAGACTCTTGGAGAGGGTCGAGATCGAGCTAACCTCAAATCTTGACGATTTAGAGTCTATAAAGAAGGCCATTACATCAGGTTTCTTCCCTCATTGTGCAAGGCTGCGAAAGAATGGATCTTATAAAATAGTCAAACATCAACAGGCTGCCTCCATACACCCCAGCTCAGGCTTGTCACAGGAGTTTCCGACATGGGTTTTATACCATGAACTGGTGCTTACATCCAAGGAATACATGAGACAGATTTTACACGGTGTGAAAGAGTATGAAGAAGAGAAGGCAATGTCTTTGGTCCAAAGCTCCAGGATCTTGCCCTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031047 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

119

Amino Acids

13.81

Weight (kDa)

9.3

Isoelectric Point (pI)

56.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_NTP_bind	PF07717	32 - 94	2.6e-18	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Orthologous Genes (Group: OG0018771)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06762
rosa_laevigata	RLG00000016199
rosa_multiflora	Rmu_sc0002270.1_g000026
rosa_rugosa	Rorug02G0015300
rosa_samantha	Rh2BG073600 Rh2DG060200 Rh2DG071700 Rh6BG121500 Rh6CG119900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	159
AccB7I	CCANNNNNTGG	1 cut(s)	247
AclWI	GGATC	3 cut(s)	33, 160, 350
AdeI	CACNNNGTG	1 cut(s)	292
AfiI	CCNNNNNNNGG	2 cut(s)	203, 247
AflII	CTTAAG	1 cut(s)	32
AjnI	CCWGG	1 cut(s)	338
AluBI	AGCT	3 cut(s)	64, 201, 336
AluI	AGCT	3 cut(s)	64, 201, 336
Alw26I	GTCTC	2 cut(s)	31, 268
AlwI	GGATC	3 cut(s)	33, 160, 350
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	139, 182
AspS9I	GGNCC	1 cut(s)	328
AvaII	GGWCC	1 cut(s)	328
BbvI	GCAGC	2 cut(s)	126, 169
BciT130I	CCWGG	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	31, 268
BfrI	CTTAAG	1 cut(s)	32
BisI	GCNGC	2 cut(s)	140, 183
BlsI	GCNGC	2 cut(s)	141, 184
Bme1390I	CCNGG	1 cut(s)	340
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	340
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpmI	CTGGAG	1 cut(s)	322
Bpu10I	CCTNAGC	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 247
Bse1I	ACTGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	257
BseLI	CCNNNNNNNGG	2 cut(s)	203, 247
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	252
BseXI	GCAGC	2 cut(s)	126, 169
BseYI	CCCAGC	1 cut(s)	197
BshFI	GGCC	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	203, 247
BsmAI	GTCTC	2 cut(s)	31, 268
BsnI	GGCC	1 cut(s)	104
Bsp143I	GATC	4 cut(s)	25, 57, 152, 342
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	215
BspPI	GGATC	3 cut(s)	33, 160, 350
BspTI	CTTAAG	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	4 cut(s)	25, 57, 152, 342
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	303
BstAFI	CTTAAG	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	202
BstF5I	GGATG	1 cut(s)	257
BstKTI	GATC	4 cut(s)	28, 60, 155, 345
BstMAI	GTCTC	2 cut(s)	31, 268
BstMBI	GATC	4 cut(s)	25, 57, 152, 342
BstNI	CCWGG	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	338
BstV1I	GCAGC	2 cut(s)	126, 169
BstX2I	RGATCY	2 cut(s)	152, 342
BstYI	RGATCY	2 cut(s)	152, 342
BsuRI	GGCC	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	328
CviAII	CATG	3 cut(s)	228, 242, 271
CviJI	RGCY	7 cut(s)	64, 104, 139, 182, 201, 207, 336
CviKI_1	RGCY	7 cut(s)	64, 104, 139, 182, 201, 207, 336
DdeI	CTNAG	1 cut(s)	202
DpnI	GATC	4 cut(s)	27, 59, 154, 344
DpnII	GATC	4 cut(s)	25, 57, 152, 342
DraIII	CACNNNGTG	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	261
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	338
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	3 cut(s)	231, 245, 274
FaiI	YATR	8 cut(s)	95, 159, 191, 229, 238, 243, 272, 303
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FatI	CATG	3 cut(s)	227, 241, 270
Fnu4HI	GCNGC	2 cut(s)	140, 183
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	2 cut(s)	140, 183
GluI	GCNGC	2 cut(s)	140, 183
GsaI	CCCAGC	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	322
HaeIII	GGCC	1 cut(s)	104
Hin1II	CATG	3 cut(s)	231, 245, 274
HinfI	GANTC	2 cut(s)	39, 89
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	2 cut(s)	55, 77
HpyAV	CCTTC	2 cut(s)	94, 307
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4V	TGCA	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	202
Hsp92II	CATG	3 cut(s)	231, 245, 274
Kzo9I	GATC	4 cut(s)	25, 57, 152, 342
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	9 cut(s)	7, 99, 164, 189, 200, 211, 233, 325, 352
Lsp1109I	GCAGC	2 cut(s)	126, 169
MaeIII	GTNAC	1 cut(s)	210
MalI	GATC	4 cut(s)	27, 59, 154, 344
MboI	GATC	4 cut(s)	25, 57, 152, 342
MboII	GAAGA	3 cut(s)	112, 317, 320
MflI	RGATCY	2 cut(s)	152, 342
MlyI	GAGTC	2 cut(s)	33, 98
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	4 cut(s)	42, 79, 135, 196
MseI	TTAA	1 cut(s)	33
MspCI	CTTAAG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	340
NdeII	GATC	4 cut(s)	25, 57, 152, 342
NlaIII	CATG	3 cut(s)	231, 245, 274
NmuCI	GTSAC	1 cut(s)	210
PflMI	CCANNNNNTGG	1 cut(s)	247
PfoI	TCCNGGA	1 cut(s)	338
PkrI	GCNGC	2 cut(s)	141, 184
PleI	GAGTC	2 cut(s)	33, 97
PpsI	GAGTC	2 cut(s)	33, 97
PsiI	TTATAA	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	338
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	338
PspPI	GGNCC	1 cut(s)	328
PsuI	RGATCY	2 cut(s)	152, 342
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	2 cut(s)	140, 183
Sau3AI	GATC	4 cut(s)	25, 57, 152, 342
Sau96I	GGNCC	1 cut(s)	328
SchI	GAGTC	2 cut(s)	33, 98
ScrFI	CCNGG	1 cut(s)	340
SetI	ASST	5 cut(s)	66, 71, 118, 203, 338
SinI	GGWCC	1 cut(s)	328
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	290
TaqI	TCGA	2 cut(s)	54, 60
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	210
TseI	GCWGC	2 cut(s)	139, 182
Tsp45I	GTSAC	1 cut(s)	210
TspDTI	ATGAA	3 cut(s)	17, 258, 318
Van91I	CCANNNNNTGG	1 cut(s)	247
Vha464I	CTTAAG	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.