Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002270.1

Orthogroup ID

OG0018771

Physical Location & Seq

Genomic Coordinates Reverse (-)

110880 .. 111847

Gene Structure 968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002270.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgcatgaagtgttatggtccgaggactgggatggagtcattgcaactcgatcactcgcactcaaaggcactggccatgcagagggcagtaaaatacttggtgagcttactgtgattagtgcacgtatggcgaagttccctgaggatgcgatgctgtctaaggtgattgttgcttcagatgagtacaagtgctcagctgagagggttggaattgagctaacctcaaatcccgttgatttagagcctatgaaggacattttatctggattccttgatcattctgcaaagctgcaacacaattcttatgtaacagccacagccaaggactatccatatacaccacagctcagggttggcacacaagtgctcccgagatgggttttgtaccgtgaactggacctcacaaccaatcaatacatgagacaggagatggagataaagctggcgtggtttcacagaatagctccagagtattacccgcctgaggatattgcagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031047 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

166

Amino Acids

18.87

Weight (kDa)

5.11

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018771)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06762
rosa_laevigata	RLG00000016199
rosa_multiflora	Rmu_sc0002270.1_g000026
rosa_rugosa	Rorug02G0015300
rosa_samantha	Rh2BG073600 Rh2DG060200 Rh2DG071700 Rh6BG121500 Rh6CG119900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	479
AcoI	YGGCCR	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	2 cut(s)	185, 386
AfiI	CCNNNNNNNGG	5 cut(s)	27, 82, 376, 394, 484
AleI	CACNNNNGTG	1 cut(s)	362
AluBI	AGCT	7 cut(s)	106, 197, 217, 289, 346, 442, 464
AluI	AGCT	7 cut(s)	106, 197, 217, 289, 346, 442, 464
Alw21I	GWGCWC	3 cut(s)	124, 194, 369
Alw26I	GTCTC	1 cut(s)	415
Alw44I	GTGCAC	1 cut(s)	120
Ama87I	CYCGRG	1 cut(s)	370
AoxI	GGCC	1 cut(s)	73
ApaLI	GTGCAC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	289
AspS9I	GGNCC	2 cut(s)	18, 397
AsuHPI	GGTGA	2 cut(s)	113, 175
AvaI	CYCGRG	1 cut(s)	370
AvaII	GGWCC	2 cut(s)	18, 397
AxyI	CCTNAGG	2 cut(s)	141, 483
BaeGI	GKGCMC	1 cut(s)	124
BalI	TGGCCA	1 cut(s)	75
Bbv12I	GWGCWC	3 cut(s)	124, 194, 369
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	3 cut(s)	26, 369, 424
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	415
BisI	GCNGC	1 cut(s)	290
BlpI	GCTNAGC	1 cut(s)	193
BlsI	GCNGC	1 cut(s)	291
Bme18I	GGWCC	2 cut(s)	18, 397
BmeT110I	CYCGRG	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	18, 397
BmrI	ACTGGG	1 cut(s)	37
BmsI	GCATC	2 cut(s)	136, 141
BmuI	ACTGGG	1 cut(s)	37
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	347
Bpu1102I	GCTNAGC	1 cut(s)	193
BsaAI	YACGTR	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	21, 321
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	5 cut(s)	27, 82, 376, 394, 484
Bse1I	ACTGG	3 cut(s)	32, 76, 399
Bse21I	CCTNAGG	2 cut(s)	141, 483
Bse3DI	GCAATG	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	21, 321
BseGI	GGATG	2 cut(s)	37, 151
BseLI	CCNNNNNNNGG	5 cut(s)	27, 82, 376, 394, 484
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	5 cut(s)	132, 189, 207, 361, 474
BseNI	ACTGG	3 cut(s)	32, 76, 399
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	276
BshFI	GGCC	1 cut(s)	75
BsiHKAI	GWGCWC	3 cut(s)	124, 194, 369
BsiHKCI	CYCGRG	1 cut(s)	370
BslI	CCNNNNNNNGG	5 cut(s)	27, 82, 376, 394, 484
BsmAI	GTCTC	1 cut(s)	415
BsnI	GGCC	1 cut(s)	75
BsoBI	CYCGRG	1 cut(s)	370
Bsp1286I	GDGCHC	3 cut(s)	124, 194, 369
Bsp143I	GATC	2 cut(s)	50, 274
Bsp1720I	GCTNAGC	1 cut(s)	193
BspACI	CCGC	1 cut(s)	479
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	5 cut(s)	133, 190, 206, 360, 475
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	3 cut(s)	32, 76, 399
BssECI	CCNNGG	2 cut(s)	21, 321
BssMI	GATC	2 cut(s)	50, 274
BssT1I	CCWWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	112, 389
BstBAI	YACGTR	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	6 cut(s)	141, 159, 193, 198, 347, 483
BstF5I	GGATG	2 cut(s)	37, 151
BstKTI	GATC	2 cut(s)	53, 277
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	2 cut(s)	50, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstSLI	GKGCMC	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	276
Bsu36I	CCTNAGG	2 cut(s)	141, 483
BsuRI	GGCC	1 cut(s)	75
BtgZI	GCGATG	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	37, 151
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	444
Cfr13I	GGNCC	2 cut(s)	18, 397
Csp6I	GTAC	2 cut(s)	184, 385
CviAII	CATG	3 cut(s)	5, 77, 418
CviQI	GTAC	2 cut(s)	184, 385
DdeI	CTNAG	6 cut(s)	141, 159, 193, 198, 347, 483
DpnI	GATC	2 cut(s)	52, 276
DpnII	GATC	2 cut(s)	50, 274
EaeI	YGGCCR	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	321
Eco47I	GGWCC	2 cut(s)	18, 397
Eco57I	CTGAAG	1 cut(s)	159
Eco81I	CCTNAGG	2 cut(s)	141, 483
Eco88I	CYCGRG	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	321
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	3 cut(s)	8, 80, 421
FaiI	YATR	9 cut(s)	6, 16, 78, 128, 248, 306, 334, 336, 419
FatI	CATG	3 cut(s)	4, 76, 417
FauI	CCCGC	1 cut(s)	486
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	1 cut(s)	290
FokI	GGATG	2 cut(s)	44, 158
Fsp4HI	GCNGC	1 cut(s)	290
GluI	GCNGC	1 cut(s)	290
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	75
Hin1II	CATG	3 cut(s)	8, 80, 421
HinfI	GANTC	2 cut(s)	36, 267
HphI	GGTGA	2 cut(s)	113, 175
Hpy166II	GTNNAC	2 cut(s)	122, 392
Hpy188I	TCNGA	2 cut(s)	22, 178
Hpy188III	TCNNGA	3 cut(s)	264, 370, 467
Hpy8I	GTNNAC	2 cut(s)	122, 392
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	2 cut(s)	112, 389
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	7 cut(s)	4, 44, 80, 122, 284, 292, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	6 cut(s)	141, 159, 193, 198, 347, 483
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	3 cut(s)	8, 80, 421
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	50, 274
LmnI	GCTCC	2 cut(s)	372, 469
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	2 cut(s)	136, 141
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	2 cut(s)	52, 276
MboI	GATC	2 cut(s)	50, 274
MhlI	GDGCHC	3 cut(s)	124, 194, 369
MlsI	TGGCCA	1 cut(s)	75
MluCI	AATT	2 cut(s)	210, 298
MluNI	TGGCCA	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	7 cut(s)	16, 76, 136, 195, 232, 410, 478
Mox20I	TGGCCA	1 cut(s)	75
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	75
MseI	TTAA	1 cut(s)	499
MslI	CAYNNNNRTG	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	2 cut(s)	50, 274
NlaIII	CATG	3 cut(s)	8, 80, 421
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	267
PkrI	GCNGC	1 cut(s)	291
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
Ppu21I	YACGTR	1 cut(s)	125
PspPI	GGNCC	2 cut(s)	18, 397
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	2 cut(s)	185, 386
RsaNI	GTAC	2 cut(s)	184, 385
RseI	CAYNNNNRTG	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	499
SatI	GCNGC	1 cut(s)	290
Sau3AI	GATC	2 cut(s)	50, 274
Sau96I	GGNCC	2 cut(s)	18, 397
SchI	GAGTC	1 cut(s)	45
SduI	GDGCHC	3 cut(s)	124, 194, 369
SfaNI	GCATC	2 cut(s)	136, 141
SinI	GGWCC	2 cut(s)	18, 397
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	2 cut(s)	210, 298
SsiI	CCGC	1 cut(s)	479
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	112, 389
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	49
TasI	AATT	2 cut(s)	210, 298
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	1 cut(s)	499
Tru9I	TTAA	1 cut(s)	499
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	21, 263
TspRI	CASTG	1 cut(s)	76
VneI	GTGCAC	1 cut(s)	120
VpaK11BI	GGWCC	2 cut(s)	18, 397
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.