Pre-mRNA-splicing factor ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g06762 |
| rosa_laevigata | RLG00000016199 |
| rosa_multiflora | Rmu_sc0002270.1_g000026 |
| rosa_rugosa | Rorug02G0015300 |
| rosa_samantha | Rh2BG073600 Rh2DG060200 Rh2DG071700 Rh6BG121500 Rh6CG119900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 233 |
| AfaI | GTAC | 1 cut(s) | 140 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 130, 148, 238 |
| AleI | CACNNNNGTG | 1 cut(s) | 116 |
| AluBI | AGCT | 4 cut(s) | 43, 100, 196, 218 |
| AluI | AGCT | 4 cut(s) | 43, 100, 196, 218 |
| Alw21I | GWGCWC | 1 cut(s) | 123 |
| Alw26I | GTCTC | 1 cut(s) | 169 |
| Ama87I | CYCGRG | 1 cut(s) | 124 |
| ApeKI | GCWGC | 1 cut(s) | 43 |
| AspS9I | GGNCC | 1 cut(s) | 151 |
| AvaI | CYCGRG | 1 cut(s) | 124 |
| AvaII | GGWCC | 1 cut(s) | 151 |
| AxyI | CCTNAGG | 1 cut(s) | 237 |
| Bbv12I | GWGCWC | 1 cut(s) | 123 |
| BbvI | GCAGC | 1 cut(s) | 30 |
| BccI | CCATC | 2 cut(s) | 123, 178 |
| BclI | TGATCA | 1 cut(s) | 28 |
| BcoDI | GTCTC | 1 cut(s) | 169 |
| BisI | GCNGC | 1 cut(s) | 44 |
| BlsI | GCNGC | 1 cut(s) | 45 |
| Bme18I | GGWCC | 1 cut(s) | 151 |
| BmeT110I | CYCGRG | 1 cut(s) | 124 |
| BmgT120I | GGNCC | 1 cut(s) | 151 |
| BpmI | CTGGAG | 1 cut(s) | 204 |
| Bpu10I | CCTNAGC | 1 cut(s) | 101 |
| BsaJI | CCNNGG | 1 cut(s) | 75 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 105, 135 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 130, 148, 238 |
| Bse1I | ACTGG | 1 cut(s) | 153 |
| Bse21I | CCTNAGG | 1 cut(s) | 237 |
| BseDI | CCNNGG | 1 cut(s) | 75 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 130, 148, 238 |
| BseMII | CTCAG | 2 cut(s) | 115, 228 |
| BseNI | ACTGG | 1 cut(s) | 153 |
| BseXI | GCAGC | 1 cut(s) | 30 |
| BsiHKAI | GWGCWC | 1 cut(s) | 123 |
| BsiHKCI | CYCGRG | 1 cut(s) | 124 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 130, 148, 238 |
| BsmAI | GTCTC | 1 cut(s) | 169 |
| BsoBI | CYCGRG | 1 cut(s) | 124 |
| Bsp1286I | GDGCHC | 1 cut(s) | 123 |
| Bsp143I | GATC | 1 cut(s) | 28 |
| BspACI | CCGC | 1 cut(s) | 233 |
| BspCNI | CTCAG | 2 cut(s) | 114, 229 |
| BsrI | ACTGG | 1 cut(s) | 153 |
| BssECI | CCNNGG | 1 cut(s) | 75 |
| BssMI | GATC | 1 cut(s) | 28 |
| BssT1I | CCWWGG | 1 cut(s) | 75 |
| Bst4CI | ACNGT | 1 cut(s) | 143 |
| BstC8I | GCNNGC | 1 cut(s) | 198 |
| BstDEI | CTNAG | 2 cut(s) | 101, 237 |
| BstKTI | GATC | 1 cut(s) | 31 |
| BstMAI | GTCTC | 1 cut(s) | 169 |
| BstMBI | GATC | 1 cut(s) | 28 |
| BstV1I | GCAGC | 1 cut(s) | 30 |
| Bsu36I | CCTNAGG | 1 cut(s) | 237 |
| Cac8I | GCNNGC | 1 cut(s) | 198 |
| Cfr13I | GGNCC | 1 cut(s) | 151 |
| Csp6I | GTAC | 1 cut(s) | 139 |
| CviAII | CATG | 1 cut(s) | 172 |
| CviJI | RGCY | 6 cut(s) | 43, 68, 74, 100, 196, 218 |
| CviKI_1 | RGCY | 6 cut(s) | 43, 68, 74, 100, 196, 218 |
| CviQI | GTAC | 1 cut(s) | 139 |
| DdeI | CTNAG | 2 cut(s) | 101, 237 |
| DpnI | GATC | 1 cut(s) | 30 |
| DpnII | GATC | 1 cut(s) | 28 |
| Eco130I | CCWWGG | 1 cut(s) | 75 |
| Eco47I | GGWCC | 1 cut(s) | 151 |
| Eco81I | CCTNAGG | 1 cut(s) | 237 |
| Eco88I | CYCGRG | 1 cut(s) | 124 |
| EcoT14I | CCWWGG | 1 cut(s) | 75 |
| ErhI | CCWWGG | 1 cut(s) | 75 |
| FaeI | CATG | 1 cut(s) | 175 |
| FaiI | YATR | 4 cut(s) | 60, 88, 90, 173 |
| FatI | CATG | 1 cut(s) | 171 |
| FauI | CCCGC | 1 cut(s) | 240 |
| FbaI | TGATCA | 1 cut(s) | 28 |
| Fnu4HI | GCNGC | 1 cut(s) | 44 |
| Fsp4HI | GCNGC | 1 cut(s) | 44 |
| GluI | GCNGC | 1 cut(s) | 44 |
| GsuI | CTGGAG | 1 cut(s) | 204 |
| Hin1II | CATG | 1 cut(s) | 175 |
| HinfI | GANTC | 1 cut(s) | 21 |
| Hpy166II | GTNNAC | 1 cut(s) | 146 |
| Hpy188III | TCNNGA | 3 cut(s) | 18, 124, 221 |
| Hpy8I | GTNNAC | 1 cut(s) | 146 |
| HpyCH4III | ACNGT | 1 cut(s) | 143 |
| HpyCH4V | TGCA | 3 cut(s) | 38, 46, 248 |
| HpyF3I | CTNAG | 2 cut(s) | 101, 237 |
| Hsp92II | CATG | 1 cut(s) | 175 |
| Ksp22I | TGATCA | 1 cut(s) | 28 |
| Kzo9I | GATC | 1 cut(s) | 28 |
| LmnI | GCTCC | 2 cut(s) | 126, 223 |
| LpnPI | CCDG | 6 cut(s) | 3, 88, 134, 182, 234, 249 |
| Lsp1109I | GCAGC | 1 cut(s) | 30 |
| MaeIII | GTNAC | 1 cut(s) | 61 |
| MalI | GATC | 1 cut(s) | 30 |
| MboI | GATC | 1 cut(s) | 28 |
| MboII | GAAGA | 1 cut(s) | 193 |
| MhlI | GDGCHC | 1 cut(s) | 123 |
| MluCI | AATT | 1 cut(s) | 52 |
| MnlI | CCTC | 2 cut(s) | 164, 232 |
| MseI | TTAA | 1 cut(s) | 253 |
| MslI | CAYNNNNRTG | 1 cut(s) | 116 |
| NdeII | GATC | 1 cut(s) | 28 |
| NlaIII | CATG | 1 cut(s) | 175 |
| OliI | CACNNNNGTG | 1 cut(s) | 116 |
| PfeI | GAWTC | 1 cut(s) | 21 |
| PkrI | GCNGC | 1 cut(s) | 45 |
| PspPI | GGNCC | 1 cut(s) | 151 |
| RsaI | GTAC | 1 cut(s) | 140 |
| RsaNI | GTAC | 1 cut(s) | 139 |
| RseI | CAYNNNNRTG | 1 cut(s) | 116 |
| SaqAI | TTAA | 1 cut(s) | 253 |
| SatI | GCNGC | 1 cut(s) | 44 |
| Sau3AI | GATC | 1 cut(s) | 28 |
| Sau96I | GGNCC | 1 cut(s) | 151 |
| SduI | GDGCHC | 1 cut(s) | 123 |
| SetI | ASST | 5 cut(s) | 45, 102, 156, 198, 220 |
| SinI | GGWCC | 1 cut(s) | 151 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 116 |
| Sse9I | AATT | 1 cut(s) | 52 |
| SsiI | CCGC | 1 cut(s) | 233 |
| StyI | CCWWGG | 1 cut(s) | 75 |
| TaaI | ACNGT | 1 cut(s) | 143 |
| TasI | AATT | 1 cut(s) | 52 |
| TfiI | GAWTC | 1 cut(s) | 21 |
| Tru1I | TTAA | 1 cut(s) | 253 |
| Tru9I | TTAA | 1 cut(s) | 253 |
| TseI | GCWGC | 1 cut(s) | 43 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| VpaK11BI | GGWCC | 1 cut(s) | 151 |