Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018233

Physical Location & Seq

Genomic Coordinates Forward (+)

8214722 .. 8215287

Gene Structure 566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016610

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTGCCCAGAACAGGACTGCGGGGCAGTATTAGACCCTGAGCACTGTCGTCAGATCCTCCCAAGCAGGGTCATTGATAGGTGGGTAGATGACATAAATGATGAAAACTTAGAGGGTTGTGTAGCCATCACAACTATTGGTGATGACACAAAAACTCACGAGTTTCCTGAAAACAAGCCTTCTAGCAACAACATTGCTACTCATTCCAAAGAGAAGTACTCTGAGGCAAATTTGCAGCACTTAAACAAGGCTTATTGTCTAGCCATCAAAAAGCTAATAAATTTTGCAAGATCTCATGAGCTACCTGGGATTAAGTGCTCCAAGGCGATTTTACAACACCTACAAGACGATGACTATGAAGCTGAAGATGAAGAAGGAGAGGATGACCCGGATCAATCCAGCGATTTTTTGATGAATTTATTTGAAAAGTTTCATACTTGTCTCCAGACAAATATGAAATTTTTTGATGAGCTCATCAATGATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

163

Amino Acids

18.55

Weight (kDa)

4.51

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018233)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000016610 RLG00000016612 RLG00000027698
rosa_multiflora	Rmu_sc0002497.1_g000005
rosa_rugosa	Rorug01G0291700 Rorug01G0291800
rosa_samantha	Rh1BG265400 Rh1BG265500 Rh1DG295400 Rh1DG295500 Rh2DG105200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	2 cut(s)	49, 399
AcsI	RAATTY	4 cut(s)	229, 280, 415, 458
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	2 cut(s)	13, 67
AgsI	TTSAA	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	4 cut(s)	274, 301, 362, 472
AluI	AGCT	4 cut(s)	274, 301, 362, 472
Alw21I	GWGCWC	3 cut(s)	45, 320, 474
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	2 cut(s)	49, 399
ApeKI	GCWGC	1 cut(s)	235
ApoI	RAATTY	4 cut(s)	229, 280, 415, 458
Asp700I	GAANNNNTTC	1 cut(s)	429
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	474
BauI	CACGAG	1 cut(s)	158
Bbv12I	GWGCWC	3 cut(s)	45, 320, 474
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	2 cut(s)	134, 272
BciT130I	CCWGG	1 cut(s)	306
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	2 cut(s)	183, 260
BglII	AGATCT	1 cut(s)	290
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	306, 389
BmrFI	CCNGG	2 cut(s)	306, 389
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpmI	CTGGAG	1 cut(s)	428
Bpu10I	CCTNAGC	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	389
BsaJI	CCNNGG	2 cut(s)	305, 321
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 67
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	305, 321
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	2 cut(s)	13, 67
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	30, 213
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	247
BsiHKAI	GWGCWC	3 cut(s)	45, 320, 474
BsiSI	CCGG	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	13, 67
BsmAI	GTCTC	1 cut(s)	446
Bsp1286I	GDGCHC	4 cut(s)	8, 45, 320, 474
Bsp143I	GATC	3 cut(s)	54, 290, 391
BspACI	CCGC	1 cut(s)	21
BspCNI	CTCAG	2 cut(s)	31, 214
BspHI	TCATGA	1 cut(s)	295
BspPI	GGATC	2 cut(s)	49, 399
BsrDI	GCAATG	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	305, 321
BssMI	GATC	3 cut(s)	54, 290, 391
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	321
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	47
BstDEI	CTNAG	3 cut(s)	39, 109, 222
BstF5I	GGATG	1 cut(s)	388
BstKTI	GATC	3 cut(s)	57, 293, 394
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	3 cut(s)	54, 290, 391
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	304, 387
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	247
BstX2I	RGATCY	2 cut(s)	54, 290
BstYI	RGATCY	2 cut(s)	54, 290
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	43
CciI	TCATGA	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	8 cut(s)	125, 178, 251, 263, 274, 301, 362, 472
CviKI_1	RGCY	8 cut(s)	125, 178, 251, 263, 274, 301, 362, 472
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	3 cut(s)	39, 109, 222
DpnI	GATC	3 cut(s)	56, 292, 393
DpnII	GATC	3 cut(s)	54, 290, 391
Ecl136II	GAGCTC	1 cut(s)	472
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	474
Eco53kI	GAGCTC	1 cut(s)	472
Eco57I	CTGAAG	1 cut(s)	384
EcoICRI	GAGCTC	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	1 cut(s)	299
FaiI	YATR	5 cut(s)	95, 297, 357, 435, 455
FatI	CATG	1 cut(s)	295
FauI	CCCGC	1 cut(s)	14
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	1 cut(s)	236
FspBI	CTAG	2 cut(s)	183, 260
GluI	GCNGC	1 cut(s)	236
GsuI	CTGGAG	1 cut(s)	428
HapII	CCGG	1 cut(s)	389
Hin1II	CATG	1 cut(s)	299
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	54, 223
Hpy188III	TCNNGA	4 cut(s)	158, 167, 296, 445
HpyAV	CCTTC	2 cut(s)	189, 368
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	2 cut(s)	235, 287
HpyF3I	CTNAG	3 cut(s)	39, 109, 222
Hsp92II	CATG	1 cut(s)	299
Kzo9I	GATC	3 cut(s)	54, 290, 391
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	9 cut(s)	21, 51, 52, 180, 291, 318, 402, 412, 458
Lsp1109I	GCAGC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	183, 260
MalI	GATC	3 cut(s)	56, 292, 393
MboI	GATC	3 cut(s)	54, 290, 391
MboII	GAAGA	2 cut(s)	377, 383
MflI	RGATCY	2 cut(s)	54, 290
MhlI	GDGCHC	4 cut(s)	8, 45, 320, 474
MluCI	AATT	4 cut(s)	229, 280, 415, 458
MnlI	CCTC	4 cut(s)	68, 106, 217, 373
MroXI	GAANNNNTTC	1 cut(s)	429
MseI	TTAA	2 cut(s)	242, 312
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	2 cut(s)	306, 389
MvaI	CCWGG	1 cut(s)	306
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	3 cut(s)	54, 290, 391
NlaIII	CATG	1 cut(s)	299
PagI	TCATGA	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	429
PkrI	GCNGC	1 cut(s)	237
Psp124BI	GAGCTC	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PsuI	RGATCY	2 cut(s)	54, 290
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SacI	GAGCTC	1 cut(s)	474
SaqAI	TTAA	2 cut(s)	242, 312
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	3 cut(s)	54, 290, 391
ScaI	AGTACT	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	306, 389
SduI	GDGCHC	4 cut(s)	8, 45, 320, 474
SetI	ASST	7 cut(s)	83, 276, 303, 307, 342, 364, 474
Sse9I	AATT	4 cut(s)	229, 280, 415, 458
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	2 cut(s)	183, 260
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	2 cut(s)	304, 387
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	47
TasI	AATT	4 cut(s)	229, 280, 415, 458
TatI	WGTACW	1 cut(s)	216
Tru1I	TTAA	2 cut(s)	242, 312
Tru9I	TTAA	2 cut(s)	242, 312
TscAI	CASTG	1 cut(s)	50
TseI	GCWGC	1 cut(s)	235
TspDTI	ATGAA	6 cut(s)	117, 372, 384, 422, 428, 470
TspRI	CASTG	1 cut(s)	50
XapI	RAATTY	4 cut(s)	229, 280, 415, 458
XmnI	GAANNNNTTC	1 cut(s)	429
XspI	CTAG	2 cut(s)	183, 260
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.