Rorug01G0291800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0018233
Physical Location & Seq
Reverse (-)
40811755 .. 40813443
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0291800.1

Sequence Viewer

Length: 618 bp
ATGGCGTTCCCATTCTTAGAAGCAGTTATTGCCCCACTCTTTAACAAGTTCACCCCTCTTCCGGAGGGTCCGCTTAGGGAGAAAATTGAGGAGCTCGCCTCTTCCCTCAAGTTTCCATTGAAGAAGTTGTTTGTCGTTGATGGATCTATAAGGTCAAGTCACAGCAATGGATTTTTTAAGAACAAGAGGATTGTCCTTTATGATACACTGATCCAGCAGTGCAAAAATGATGAGGAAATTGTAGCTGTTCTAGCTCATGAGCTAGGCTATTGGAAGCTTAATCACAGTGTATACTTATTCATTTCTATGCAGATCCGTACGCTGTTACACTTTGGGGGATATGCTCTCCTGAGAGACTCCAGCAGTCGGTTTCAAAGCTTTGGGTTTTATACCCAACCAGTAATCATTGGTCTCATCATATTTCAGCATACCATAACACCTATCCAGCACCTAGTACACTTTGCTCGTAACCTTGTGAGCCGAGCTTTTGAATTTCAGGCTGATGCTTTTGCTAAGAAACTTGGTTATGCCTCTTCACTTCGAGCTAGTCTTGTTAGGCTACAGTTTACATCATTTCTAAACGGAAATTTGATGGTATTTCTCAGCTATGAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.52

Weight (kDa)

9.46

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M48 PF01435 20 - 185 2.9e-35 Peptidase family M48
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 291
AccIII TCCGGA 1 cut(s) 61
AciI CCGC 1 cut(s) 71
AclWI GGATC 3 cut(s) 151, 205, 307
AcsI RAATTY 2 cut(s) 491, 586
AfaI GTAC 2 cut(s) 319, 456
AfiI CCNNNNNNNGG 2 cut(s) 61, 366
AgsI TTSAA 3 cut(s) 121, 374, 491
AluBI AGCT 9 cut(s) 94, 245, 254, 262, 277, 378, 485, 545, 606
AluI AGCT 9 cut(s) 94, 245, 254, 262, 277, 378, 485, 545, 606
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 348, 416
AlwI GGATC 3 cut(s) 151, 205, 307
Aor13HI TCCGGA 1 cut(s) 61
ApoI RAATTY 2 cut(s) 491, 586
AspS9I GGNCC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 43
AvaII GGWCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 96
BccI CCATC 2 cut(s) 134, 586
BcoDI GTCTC 2 cut(s) 348, 416
BfaI CTAG 4 cut(s) 251, 263, 452, 546
BfmI CTRYAG 1 cut(s) 560
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 69
BmsI GCATC 1 cut(s) 493
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BpmI CTGGAG 1 cut(s) 343
Bpu10I CCTNAGC 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 416
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 366
Bse1I ACTGG 1 cut(s) 398
Bse3DI GCAATG 1 cut(s) 172
BseAI TCCGGA 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 61, 366
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 2 cut(s) 341, 616
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 62
BsiWI CGTACG 1 cut(s) 317
BslI CCNNNNNNNGG 2 cut(s) 61, 366
BsmAI GTCTC 2 cut(s) 348, 416
Bso31I GGTCTC 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 96
Bsp13I TCCGGA 1 cut(s) 61
Bsp143I GATC 3 cut(s) 143, 210, 312
BspACI CCGC 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 342, 615
BspEI TCCGGA 1 cut(s) 61
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 3 cut(s) 151, 205, 307
BspTNI GGTCTC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 172
BsrI ACTGG 1 cut(s) 398
BssMI GATC 3 cut(s) 143, 210, 312
BssNAI GTATAC 1 cut(s) 292
Bst1107I GTATAC 1 cut(s) 292
Bst4CI ACNGT 2 cut(s) 287, 564
Bst6I CTCTTC 3 cut(s) 63, 106, 538
BstAPI GCANNNNNTGC 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 5 cut(s) 16, 74, 350, 513, 602
BstKTI GATC 3 cut(s) 146, 213, 315
BstMAI GTCTC 2 cut(s) 348, 416
BstMBI GATC 3 cut(s) 143, 210, 312
BstMWI GCNNNNNNNGC 2 cut(s) 29, 251
BstSFI CTRYAG 1 cut(s) 560
BstX2I RGATCY 2 cut(s) 143, 312
BstYI RGATCY 2 cut(s) 143, 312
BstZ17I GTATAC 1 cut(s) 292
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 3 cut(s) 206, 224, 292
Cac8I GCNNGC 1 cut(s) 96
CciI TCATGA 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 2 cut(s) 318, 455
CviAII CATG 1 cut(s) 257
CviQI GTAC 2 cut(s) 318, 455
DdeI CTNAG 5 cut(s) 16, 74, 350, 513, 602
DpnI GATC 3 cut(s) 145, 212, 314
DpnII GATC 3 cut(s) 143, 210, 312
Eam1104I CTCTTC 3 cut(s) 63, 106, 538
EarI CTCTTC 3 cut(s) 63, 106, 538
Ecl136II GAGCTC 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 416
Eco47I GGWCC 1 cut(s) 68
Eco53kI GAGCTC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 1 cut(s) 260
FatI CATG 1 cut(s) 256
FblI GTMKAC 1 cut(s) 291
FriOI GRGCYC 1 cut(s) 96
FspBI CTAG 4 cut(s) 251, 263, 452, 546
GsuI CTGGAG 1 cut(s) 343
HapII CCGG 1 cut(s) 62
Hin1II CATG 1 cut(s) 260
HindIII AAGCTT 2 cut(s) 275, 376
HinfI GANTC 1 cut(s) 356
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 4 cut(s) 51, 292, 457, 567
Hpy188III TCNNGA 3 cut(s) 62, 257, 349
Hpy8I GTNNAC 4 cut(s) 51, 292, 457, 567
HpyCH4III ACNGT 2 cut(s) 287, 564
HpyCH4V TGCA 2 cut(s) 222, 310
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 251
HpyF3I CTNAG 5 cut(s) 16, 74, 350, 513, 602
Hsp92II CATG 1 cut(s) 260
Kpn2I TCCGGA 1 cut(s) 61
Kzo9I GATC 3 cut(s) 143, 210, 312
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 7 cut(s) 75, 227, 362, 373, 411, 458, 482
LweI GCATC 1 cut(s) 493
MaeI CTAG 4 cut(s) 251, 263, 452, 546
MaeIII GTNAC 3 cut(s) 158, 324, 467
MalI GATC 3 cut(s) 145, 212, 314
MboI GATC 3 cut(s) 143, 210, 312
MboII GAAGA 4 cut(s) 50, 93, 133, 525
MflI RGATCY 2 cut(s) 143, 312
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 4 cut(s) 84, 237, 491, 586
MlyI GAGTC 1 cut(s) 350
MnlI CCTC 8 cut(s) 58, 66, 82, 109, 116, 180, 226, 541
MroI TCCGGA 1 cut(s) 61
MseI TTAA 3 cut(s) 42, 177, 279
MslI CAYNNNNRTG 2 cut(s) 165, 305
MspI CCGG 1 cut(s) 62
MwoI GCNNNNNNNGC 2 cut(s) 29, 251
NdeII GATC 3 cut(s) 143, 210, 312
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 69
NmeAIII GCCGAG 1 cut(s) 506
NmuCI GTSAC 1 cut(s) 158
PagI TCATGA 1 cut(s) 256
Pfl23II CGTACG 1 cut(s) 317
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 96
PspLI CGTACG 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 1 cut(s) 68
PsuI RGATCY 2 cut(s) 143, 312
RsaI GTAC 2 cut(s) 319, 456
RsaNI GTAC 2 cut(s) 318, 455
RseI CAYNNNNRTG 2 cut(s) 165, 305
SacI GAGCTC 1 cut(s) 96
SaqAI TTAA 3 cut(s) 42, 177, 279
Sau3AI GATC 3 cut(s) 143, 210, 312
Sau96I GGNCC 1 cut(s) 68
SchI GAGTC 1 cut(s) 350
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 1 cut(s) 493
SfcI CTRYAG 1 cut(s) 560
SinI GGWCC 1 cut(s) 68
SmiMI CAYNNNNRTG 2 cut(s) 165, 305
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 4 cut(s) 84, 237, 491, 586
SsiI CCGC 1 cut(s) 71
SspMI CTAG 4 cut(s) 251, 263, 452, 546
SstI GAGCTC 1 cut(s) 96
TaaI ACNGT 2 cut(s) 287, 564
TaqI TCGA 1 cut(s) 541
TasI AATT 4 cut(s) 84, 237, 491, 586
TatI WGTACW 1 cut(s) 454
Tru1I TTAA 3 cut(s) 42, 177, 279
Tru9I TTAA 3 cut(s) 42, 177, 279
TscAI CASTG 3 cut(s) 213, 224, 292
TseFI GTSAC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 289
TspGWI ACGGA 2 cut(s) 305, 597
TspRI CASTG 3 cut(s) 213, 224, 292
VpaK11BI GGWCC 1 cut(s) 68
XapI RAATTY 2 cut(s) 491, 586
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 4 cut(s) 251, 263, 452, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.