RLG00000016612

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018233
Physical Location & Seq
Forward (+)
8241045 .. 8241881
837 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016612

Sequence Viewer

Length: 744 bp
ATGTTCACAATGAAGTGTGCTTCACAGTTCTTACCACCCCGTAGCTTTTCATCTTCATCGAATAAGAAAATCAAAGGGACTCTGCAACAGTACTTCAAGGCTTGTCAACCCATCAGAAAGCCAAAGGATCTCTCAAGAGCTGATGATAATGAAGAAACTCATAAGCTCCCTAGAAACAAGTACTCTGAATCGATTTTGCAGCACTTAAATAAGGCTTGTCTAGCCATCAGAAGGCAAATAACCCTTGCGAGATCTCATGAGTTTCCTGGGATTAAGTTCTCCAAGGTGATTCGAGGACACTTGGAGGGTTGTGTAGCCATAAAAAAGCCAACAACAATTGGTGGTGATGAAGAAACTCATGAGTTCCCTGAAAACAAGCCCTCTAGCAACAGCACTACTACTCGTTCCGAAGAGAAGTACTCTAAAGCAATTTTGCAGCACTTAAACAAGGCTTGTTGTCGAGCCATAAAAAAGCCAATAAATCTCGCAAGATCTCTTGAGCTTCCTGGGATTAAGTGCTCCAAGGCGATTTACAACAGTTGGAGGGTTGTGTACCCATCAAAAAGCCAACAACAGAGGGTAATGAGGAAGAAACCCATGAGTTTTCTGAAAAGAAGCCATCTACCTAGCAAGAACAGTACTACTTGCTTGATCAATGCGATGAAAATGATGACTATGAAGCTGAAGACGAAGAAGGAGAGGATGGAGATGAACATGATGAACCATCTATGTACGTTACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

28.38

Weight (kDa)

10.09

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 135
AcuI CTGAAG 1 cut(s) 704
AfaI GTAC 6 cut(s) 92, 182, 419, 554, 640, 733
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 2 cut(s) 265, 505
AluBI AGCT 5 cut(s) 45, 140, 166, 502, 682
AluI AGCT 5 cut(s) 45, 140, 166, 502, 682
Alw21I GWGCWC 1 cut(s) 521
AlwI GGATC 1 cut(s) 135
ApeKI GCWGC 2 cut(s) 199, 436
AsuHPI GGTGA 2 cut(s) 298, 356
BbsI GAAGAC 1 cut(s) 692
Bbv12I GWGCWC 1 cut(s) 521
BbvI GCAGC 2 cut(s) 211, 448
BccI CCATC 6 cut(s) 119, 233, 565, 627, 697, 732
BciT130I CCWGG 2 cut(s) 267, 507
BclI TGATCA 1 cut(s) 651
BfaI CTAG 5 cut(s) 171, 221, 384, 627, 742
BglII AGATCT 2 cut(s) 251, 491
BisI GCNGC 2 cut(s) 200, 437
BlsI GCNGC 2 cut(s) 201, 438
BmcAI AGTACT 4 cut(s) 92, 182, 419, 640
Bme1390I CCNGG 2 cut(s) 267, 507
BmrFI CCNGG 2 cut(s) 267, 507
BpiI GAAGAC 1 cut(s) 692
BplI GAGNNNNNCTC 2 cut(s) 404, 436
BpuEI CTTGAG 2 cut(s) 118, 518
Bsa29I ATCGAT 1 cut(s) 191
BsaJI CCNNGG 4 cut(s) 266, 282, 506, 522
Bsc4I CCNNNNNNNGG 1 cut(s) 231
BseBI CCWGG 2 cut(s) 267, 507
BseCI ATCGAT 1 cut(s) 191
BseDI CCNNGG 4 cut(s) 266, 282, 506, 522
BseGI GGATG 1 cut(s) 708
BseLI CCNNNNNNNGG 1 cut(s) 231
BseXI GCAGC 2 cut(s) 211, 448
BshVI ATCGAT 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 521
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 521
Bsp143I GATC 4 cut(s) 127, 251, 491, 651
BspDI ATCGAT 1 cut(s) 191
BspHI TCATGA 2 cut(s) 256, 358
BspPI GGATC 1 cut(s) 135
BssECI CCNNGG 4 cut(s) 266, 282, 506, 522
BssMI GATC 4 cut(s) 127, 251, 491, 651
BssT1I CCWWGG 2 cut(s) 282, 522
Bst2UI CCWGG 2 cut(s) 267, 507
Bst4CI ACNGT 4 cut(s) 27, 90, 539, 638
Bst6I CTCTTC 1 cut(s) 405
BstF5I GGATG 1 cut(s) 708
BstKTI GATC 4 cut(s) 130, 254, 494, 654
BstMBI GATC 4 cut(s) 127, 251, 491, 651
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 2 cut(s) 267, 507
BstSCI CCNGG 2 cut(s) 265, 505
BstV1I GCAGC 2 cut(s) 211, 448
BstV2I GAAGAC 1 cut(s) 692
BstX2I RGATCY 3 cut(s) 127, 251, 491
BstYI RGATCY 3 cut(s) 127, 251, 491
Bsu15I ATCGAT 1 cut(s) 191
BsuTUI ATCGAT 1 cut(s) 191
BtgZI GCGATG 1 cut(s) 674
BtsCI GGATG 1 cut(s) 708
CciI TCATGA 2 cut(s) 256, 358
ClaI ATCGAT 1 cut(s) 191
Csp6I GTAC 6 cut(s) 91, 181, 418, 553, 639, 732
CviAII CATG 4 cut(s) 257, 359, 598, 715
CviQI GTAC 6 cut(s) 91, 181, 418, 553, 639, 732
DpnI GATC 4 cut(s) 129, 253, 493, 653
DpnII GATC 4 cut(s) 127, 251, 491, 651
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 2 cut(s) 282, 522
Eco57I CTGAAG 1 cut(s) 704
EcoRII CCWGG 2 cut(s) 265, 505
EcoT14I CCWWGG 2 cut(s) 282, 522
ErhI CCWWGG 2 cut(s) 282, 522
FaeI CATG 4 cut(s) 260, 362, 601, 718
FaiI YATR 9 cut(s) 162, 258, 320, 360, 467, 599, 677, 716, 730
FaqI GGGAC 1 cut(s) 91
FatI CATG 4 cut(s) 256, 358, 597, 714
FbaI TGATCA 1 cut(s) 651
Fnu4HI GCNGC 2 cut(s) 200, 437
FokI GGATG 1 cut(s) 715
Fsp4HI GCNGC 2 cut(s) 200, 437
FspBI CTAG 5 cut(s) 171, 221, 384, 627, 742
GluI GCNGC 2 cut(s) 200, 437
Hin1II CATG 4 cut(s) 260, 362, 601, 718
HincII GTYRAC 1 cut(s) 107
HindII GTYRAC 1 cut(s) 107
HinfI GANTC 3 cut(s) 79, 188, 289
HphI GGTGA 2 cut(s) 298, 356
Hpy166II GTNNAC 3 cut(s) 6, 107, 553
Hpy188I TCNGA 5 cut(s) 116, 187, 230, 409, 609
Hpy188III TCNNGA 4 cut(s) 135, 257, 359, 497
Hpy8I GTNNAC 3 cut(s) 6, 107, 553
HpyAV CCTTC 2 cut(s) 225, 688
HpyCH4III ACNGT 4 cut(s) 27, 90, 539, 638
HpyCH4IV ACGT 1 cut(s) 734
HpyCH4V TGCA 3 cut(s) 85, 199, 436
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpySE526I ACGT 1 cut(s) 734
Hsp92II CATG 4 cut(s) 260, 362, 601, 718
Ksp22I TGATCA 1 cut(s) 651
Kzo9I GATC 4 cut(s) 127, 251, 491, 651
LmnI GCTCC 2 cut(s) 171, 524
LpnPI CCDG 5 cut(s) 252, 279, 381, 492, 519
Lsp1109I GCAGC 2 cut(s) 211, 448
MaeI CTAG 5 cut(s) 171, 221, 384, 627, 742
MaeII ACGT 1 cut(s) 734
MaeIII GTNAC 1 cut(s) 735
MalI GATC 4 cut(s) 129, 253, 493, 653
MboI GATC 4 cut(s) 127, 251, 491, 651
MboII GAAGA 7 cut(s) 45, 164, 362, 422, 601, 697, 703
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 3 cut(s) 127, 251, 491
MhlI GDGCHC 1 cut(s) 521
MluCI AATT 2 cut(s) 336, 429
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 7 cut(s) 287, 298, 391, 537, 570, 579, 693
MseI TTAA 4 cut(s) 206, 273, 443, 513
MspR9I CCNGG 2 cut(s) 267, 507
MunI CAATTG 1 cut(s) 336
MvaI CCWGG 2 cut(s) 267, 507
MwoI GCNNNNNNNGC 1 cut(s) 221
NdeII GATC 4 cut(s) 127, 251, 491, 651
NlaIII CATG 4 cut(s) 260, 362, 601, 718
PagI TCATGA 2 cut(s) 256, 358
PfeI GAWTC 2 cut(s) 188, 289
PkrI GCNGC 2 cut(s) 201, 438
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
Psp6I CCWGG 2 cut(s) 265, 505
PspGI CCWGG 2 cut(s) 265, 505
PsuI RGATCY 3 cut(s) 127, 251, 491
RsaI GTAC 6 cut(s) 92, 182, 419, 554, 640, 733
RsaNI GTAC 6 cut(s) 91, 181, 418, 553, 639, 732
SaqAI TTAA 4 cut(s) 206, 273, 443, 513
SatI GCNGC 2 cut(s) 200, 437
Sau3AI GATC 4 cut(s) 127, 251, 491, 651
ScaI AGTACT 4 cut(s) 92, 182, 419, 640
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 2 cut(s) 267, 507
SduI GDGCHC 1 cut(s) 521
SetI ASST 8 cut(s) 47, 142, 168, 288, 504, 628, 684, 737
SmlI CTYRAG 2 cut(s) 133, 497
SmoI CTYRAG 2 cut(s) 133, 497
Sse9I AATT 2 cut(s) 336, 429
SspMI CTAG 5 cut(s) 171, 221, 384, 627, 742
StyD4I CCNGG 2 cut(s) 265, 505
StyI CCWWGG 2 cut(s) 282, 522
TaaI ACNGT 4 cut(s) 27, 90, 539, 638
TaiI ACGT 1 cut(s) 737
TaqI TCGA 4 cut(s) 59, 191, 292, 460
TasI AATT 2 cut(s) 336, 429
TatI WGTACW 4 cut(s) 90, 180, 417, 638
TfiI GAWTC 2 cut(s) 188, 289
Tru1I TTAA 4 cut(s) 206, 273, 443, 513
Tru9I TTAA 4 cut(s) 206, 273, 443, 513
TseI GCWGC 2 cut(s) 199, 436
TspDTI ATGAA 9 cut(s) 26, 39, 45, 165, 363, 677, 692, 725, 734
XspI CTAG 5 cut(s) 171, 221, 384, 627, 742
ZrmI AGTACT 4 cut(s) 92, 182, 419, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.