Rh2DG105200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0018233
Physical Location & Seq
Forward (+)
8612976 .. 8613975
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG105200.1

Sequence Viewer

Length: 699 bp
ATGAAGATGTTCACAATGAAGTGTACTTCACAGTTCTTACCACCCCGTAGCTTGTCATCTTCATCGAATAAGAAAATCAAAGGGGCTTTGCAACAGTACTTCAAGGCTTGTCGACCCGTCAGAAAGCCAAAGGATCTCTCAAGAGCTGATGATAATGAAGAAACTCATAAGCTCCCTAGAAACAAGTACTCTGAATCGATTTTGCAGCACTTAAATAAGGCTTGTCTAGCCATCAGAAGGCAACTTGCAAGATCTCATGTGTTTCCTGGGATCAAGTGCTCCAAGGTGATTCTAGGACACTTAGAGGGTTGTGTAGCCATAAAAAAGCCAACAACAATTGGTGGGGATGAAGAAACTCATGAGTTCCCTGAAAACAAGCCCTTTAGCAACAGCACTACTACTCGTTCCGAAGAGAAGTACTCTAAAGCGATTTTGCAGCACTTAAACAAGGCTTGTTGTCGAGCCATAAAAAAGCCAATAAATCTCGCAAGATCTCTTGAGCTTCCTGGGATTAAGTGCTCCAAGGCGATTTACAACAGTTGGAGAAAGCAGTACAGGCAATTTACTTTGTTGCTTTCTGATGTTCTAAACCAACACAAAGCCAGGATCAATCCGAGCAATTTGTTAAAGAATTTAAATCTTGAAAGTTTGGATACTTTAGTCTTCTCTCATGAGTTGATGAGACACTTCCAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

26.6

Weight (kDa)

9.9

Isoelectric Point (pI)

57.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 112
AclWI GGATC 3 cut(s) 141, 278, 614
AcsI RAATTY 1 cut(s) 631
AfaI GTAC 5 cut(s) 25, 98, 188, 419, 554
AfiI CCNNNNNNNGG 1 cut(s) 237
AgsI TTSAA 2 cut(s) 103, 644
AjnI CCWGG 3 cut(s) 265, 505, 602
AluBI AGCT 5 cut(s) 51, 146, 172, 502, 694
AluI AGCT 5 cut(s) 51, 146, 172, 502, 694
Alw21I GWGCWC 2 cut(s) 281, 521
Alw26I GTCTC 1 cut(s) 676
AlwI GGATC 3 cut(s) 141, 278, 614
ApeKI GCWGC 2 cut(s) 205, 436
ApoI RAATTY 1 cut(s) 631
Asp700I GAANNNNTTC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 298
BaeI ACNNNNGTAYC 2 cut(s) 645, 678
BbsI GAAGAC 1 cut(s) 655
Bbv12I GWGCWC 2 cut(s) 281, 521
BbvI GCAGC 2 cut(s) 217, 448
BccI CCATC 1 cut(s) 239
BciT130I CCWGG 3 cut(s) 267, 507, 604
BciVI GTATCC 1 cut(s) 646
BcoDI GTCTC 1 cut(s) 676
BfaI CTAG 3 cut(s) 177, 227, 293
BfuI GTATCC 1 cut(s) 646
BglII AGATCT 2 cut(s) 251, 491
BisI GCNGC 2 cut(s) 206, 437
BlsI GCNGC 2 cut(s) 207, 438
BmcAI AGTACT 3 cut(s) 98, 188, 419
Bme1390I CCNGG 3 cut(s) 267, 507, 604
BmrFI CCNGG 3 cut(s) 267, 507, 604
BpiI GAAGAC 1 cut(s) 655
BplI GAGNNNNNCTC 2 cut(s) 404, 436
BpuEI CTTGAG 2 cut(s) 124, 518
Bsa29I ATCGAT 1 cut(s) 197
BsaJI CCNNGG 4 cut(s) 266, 282, 506, 522
Bsc4I CCNNNNNNNGG 1 cut(s) 237
BseBI CCWGG 3 cut(s) 267, 507, 604
BseCI ATCGAT 1 cut(s) 197
BseDI CCNNGG 4 cut(s) 266, 282, 506, 522
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 237
BseXI GCAGC 2 cut(s) 217, 448
BshVI ATCGAT 1 cut(s) 197
BsiHKAI GWGCWC 2 cut(s) 281, 521
BslI CCNNNNNNNGG 1 cut(s) 237
BsmAI GTCTC 1 cut(s) 676
Bsp1286I GDGCHC 2 cut(s) 281, 521
Bsp143I GATC 5 cut(s) 133, 251, 270, 491, 606
BspDI ATCGAT 1 cut(s) 197
BspHI TCATGA 2 cut(s) 358, 670
BspPI GGATC 3 cut(s) 141, 278, 614
BssECI CCNNGG 4 cut(s) 266, 282, 506, 522
BssMI GATC 5 cut(s) 133, 251, 270, 491, 606
BssT1I CCWWGG 2 cut(s) 282, 522
Bst2UI CCWGG 3 cut(s) 267, 507, 604
Bst4CI ACNGT 3 cut(s) 33, 96, 539
Bst6I CTCTTC 1 cut(s) 405
BstDEI CTNAG 1 cut(s) 301
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 5 cut(s) 136, 254, 273, 494, 609
BstMAI GTCTC 1 cut(s) 676
BstMBI GATC 5 cut(s) 133, 251, 270, 491, 606
BstMWI GCNNNNNNNGC 2 cut(s) 227, 556
BstNI CCWGG 3 cut(s) 267, 507, 604
BstSCI CCNGG 3 cut(s) 265, 505, 602
BstV1I GCAGC 2 cut(s) 217, 448
BstV2I GAAGAC 1 cut(s) 655
BstX2I RGATCY 3 cut(s) 133, 251, 491
BstYI RGATCY 3 cut(s) 133, 251, 491
Bsu15I ATCGAT 1 cut(s) 197
BsuI GTATCC 1 cut(s) 646
BsuTUI ATCGAT 1 cut(s) 197
BtsCI GGATG 1 cut(s) 352
CciI TCATGA 2 cut(s) 358, 670
ClaI ATCGAT 1 cut(s) 197
Csp6I GTAC 5 cut(s) 24, 97, 187, 418, 553
CviAII CATG 3 cut(s) 257, 359, 671
CviQI GTAC 5 cut(s) 24, 97, 187, 418, 553
DdeI CTNAG 1 cut(s) 301
DpnI GATC 5 cut(s) 135, 253, 272, 493, 608
DpnII GATC 5 cut(s) 133, 251, 270, 491, 606
DraI TTTAAA 1 cut(s) 636
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 2 cut(s) 282, 522
EcoRII CCWGG 3 cut(s) 265, 505, 602
EcoT14I CCWWGG 2 cut(s) 282, 522
ErhI CCWWGG 2 cut(s) 282, 522
FaeI CATG 3 cut(s) 260, 362, 674
FaiI YATR 6 cut(s) 168, 258, 320, 360, 467, 672
FatI CATG 3 cut(s) 256, 358, 670
FblI GTMKAC 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 206, 437
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 2 cut(s) 206, 437
FspBI CTAG 3 cut(s) 177, 227, 293
GluI GCNGC 2 cut(s) 206, 437
Hin1II CATG 3 cut(s) 260, 362, 674
HincII GTYRAC 1 cut(s) 113
HindII GTYRAC 1 cut(s) 113
HinfI GANTC 2 cut(s) 194, 289
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 3 cut(s) 12, 24, 113
Hpy188I TCNGA 6 cut(s) 122, 193, 236, 409, 580, 615
Hpy188III TCNNGA 5 cut(s) 141, 359, 497, 641, 671
Hpy8I GTNNAC 3 cut(s) 12, 24, 113
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 3 cut(s) 33, 96, 539
HpyCH4V TGCA 4 cut(s) 91, 205, 248, 436
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 556
HpyF3I CTNAG 1 cut(s) 301
Hsp92II CATG 3 cut(s) 260, 362, 674
Kzo9I GATC 5 cut(s) 133, 251, 270, 491, 606
LmnI GCTCC 3 cut(s) 177, 284, 524
LpnPI CCDG 8 cut(s) 252, 279, 381, 492, 519, 541, 589, 616
Lsp1109I GCAGC 2 cut(s) 217, 448
MaeI CTAG 3 cut(s) 177, 227, 293
MalI GATC 5 cut(s) 135, 253, 272, 493, 608
MboI GATC 5 cut(s) 133, 251, 270, 491, 606
MboII GAAGA 6 cut(s) 16, 51, 170, 362, 422, 655
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 3 cut(s) 133, 251, 491
MhlI GDGCHC 2 cut(s) 281, 521
MluCI AATT 4 cut(s) 336, 560, 619, 631
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 6 cut(s) 212, 443, 513, 626, 635, 697
MspR9I CCNGG 3 cut(s) 267, 507, 604
MunI CAATTG 1 cut(s) 336
MvaI CCWGG 3 cut(s) 267, 507, 604
MwoI GCNNNNNNNGC 2 cut(s) 227, 556
NdeII GATC 5 cut(s) 133, 251, 270, 491, 606
NlaIII CATG 3 cut(s) 260, 362, 674
PagI TCATGA 2 cut(s) 358, 670
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 194, 289
PkrI GCNGC 2 cut(s) 207, 438
Psp6I CCWGG 3 cut(s) 265, 505, 602
PspGI CCWGG 3 cut(s) 265, 505, 602
PsuI RGATCY 3 cut(s) 133, 251, 491
RsaI GTAC 5 cut(s) 25, 98, 188, 419, 554
RsaNI GTAC 5 cut(s) 24, 97, 187, 418, 553
SalI GTCGAC 1 cut(s) 111
SaqAI TTAA 6 cut(s) 212, 443, 513, 626, 635, 697
SatI GCNGC 2 cut(s) 206, 437
Sau3AI GATC 5 cut(s) 133, 251, 270, 491, 606
ScaI AGTACT 3 cut(s) 98, 188, 419
ScrFI CCNGG 3 cut(s) 267, 507, 604
SduI GDGCHC 2 cut(s) 281, 521
SetI ASST 6 cut(s) 53, 148, 174, 288, 504, 696
SmiI ATTTAAAT 1 cut(s) 636
SmlI CTYRAG 2 cut(s) 139, 497
SmoI CTYRAG 2 cut(s) 139, 497
Sse9I AATT 4 cut(s) 336, 560, 619, 631
SspMI CTAG 3 cut(s) 177, 227, 293
StyD4I CCNGG 3 cut(s) 265, 505, 602
StyI CCWWGG 2 cut(s) 282, 522
SwaI ATTTAAAT 1 cut(s) 636
TaaI ACNGT 3 cut(s) 33, 96, 539
TaqI TCGA 4 cut(s) 65, 112, 197, 460
TasI AATT 4 cut(s) 336, 560, 619, 631
TatI WGTACW 5 cut(s) 23, 96, 186, 417, 552
TfiI GAWTC 2 cut(s) 194, 289
Tru1I TTAA 6 cut(s) 212, 443, 513, 626, 635, 697
Tru9I TTAA 6 cut(s) 212, 443, 513, 626, 635, 697
TseI GCWGC 2 cut(s) 205, 436
TspDTI ATGAA 5 cut(s) 17, 32, 51, 171, 363
XapI RAATTY 1 cut(s) 631
XmiI GTMKAC 1 cut(s) 112
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 3 cut(s) 177, 227, 293
ZrmI AGTACT 3 cut(s) 98, 188, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.