Rh1DG295500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018233
Physical Location & Seq
Reverse (-)
52126446 .. 52127039
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG295500.1

Sequence Viewer

Length: 594 bp
ATGGCTGGTAATCCTGGTATTGAGAATGAAGAGTACTTCACACCACCACGTAGCTTCTCATCATCATTGAAAATGCCGAAGAATCTCTCAAGATCTGATGATAATGAAAAGACTCATAAGCTTCGGAGAAACAAGTACTCCAAAGCAATTTTGAAGCACTTAAACAAGGCTAAAGCCATCAAAAAGCCAATAAACCTCGCAAGACGTCATGAGCTTCCTGGGATTAAGTGGTCCAAGTCGATTTTACAACACGTAAAAGGTTGTGTACTCATCAAAAAGCCAACAACAATTGGTGATGACAAAGAAACTAGCAGCAACAACACCCCTACTCTTTTCGAAGACAAATACTACGAAGTGATTTTGCAGCACTTAAACAAGGCTTATCTAGCCATCAAGAAGTCAATAAGTAAGGCAAGATGTCATGAGCTTCCTGGAATTAAGCGCTCCAAGGAGATTTTACAACACAGTCAACATGCACTTAAAACAAGACTAGTGTACCCATCAAAAAGCCAACAACTACATGTGGTGGTAACGAAGAAAGTCCTGAATTTCCTGGAAACAAGCCATCCAGCAATAACACTACTACTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.48

Weight (kDa)

10.05

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 208
AcsI RAATTY 1 cut(s) 547
AcyI GRCGYC 1 cut(s) 205
AfaI GTAC 4 cut(s) 35, 137, 267, 497
AfeI AGCGCT 1 cut(s) 443
AflIII ACRYGT 2 cut(s) 250, 520
AgsI TTSAA 2 cut(s) 70, 154
AhlI ACTAGT 1 cut(s) 490
AjnI CCWGG 4 cut(s) 13, 217, 430, 552
AluBI AGCT 4 cut(s) 54, 121, 214, 427
AluI AGCT 4 cut(s) 54, 121, 214, 427
Aor51HI AGCGCT 1 cut(s) 443
ApeKI GCWGC 2 cut(s) 312, 364
ApoI RAATTY 1 cut(s) 547
AspLEI GCGC 1 cut(s) 444
AspS9I GGNCC 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 305
AsuII TTCGAA 1 cut(s) 336
AvaII GGWCC 1 cut(s) 231
BaeI ACNNNNGTAYC 2 cut(s) 479, 512
BbsI GAAGAC 1 cut(s) 345
BbvI GCAGC 2 cut(s) 324, 376
BccI CCATC 4 cut(s) 185, 398, 508, 573
BciT130I CCWGG 4 cut(s) 15, 219, 432, 554
BcuI ACTAGT 1 cut(s) 490
BfaI CTAG 3 cut(s) 309, 386, 491
BfoI RGCGCY 1 cut(s) 445
BglII AGATCT 1 cut(s) 92
BisI GCNGC 2 cut(s) 313, 365
BlsI GCNGC 2 cut(s) 314, 366
BmcAI AGTACT 2 cut(s) 35, 137
Bme1390I CCNGG 4 cut(s) 15, 219, 432, 554
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 231
BmrFI CCNGG 4 cut(s) 15, 219, 432, 554
BpiI GAAGAC 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 73
BsaAI YACGTR 2 cut(s) 50, 253
BsaHI GRCGYC 1 cut(s) 205
BsaJI CCNNGG 2 cut(s) 218, 447
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bse1I ACTGG 1 cut(s) 591
BseBI CCWGG 4 cut(s) 15, 219, 432, 554
BseDI CCNNGG 2 cut(s) 218, 447
BseGI GGATG 1 cut(s) 565
BseNI ACTGG 1 cut(s) 591
BseXI GCAGC 2 cut(s) 324, 376
Bsp119I TTCGAA 1 cut(s) 336
Bsp143I GATC 1 cut(s) 92
BspHI TCATGA 2 cut(s) 208, 421
BspT104I TTCGAA 1 cut(s) 336
BsrI ACTGG 1 cut(s) 591
BssECI CCNNGG 2 cut(s) 218, 447
BssMI GATC 1 cut(s) 92
BssNI GRCGYC 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 4 cut(s) 15, 219, 432, 554
Bst4CI ACNGT 1 cut(s) 467
Bst6I CTCTTC 1 cut(s) 24
BstACI GRCGYC 1 cut(s) 205
BstBAI YACGTR 2 cut(s) 50, 253
BstBI TTCGAA 1 cut(s) 336
BstF5I GGATG 1 cut(s) 565
BstH2I RGCGCY 1 cut(s) 445
BstHHI GCGC 1 cut(s) 444
BstKTI GATC 1 cut(s) 95
BstMBI GATC 1 cut(s) 92
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 4 cut(s) 15, 219, 432, 554
BstNSI RCATGY 2 cut(s) 476, 524
BstSCI CCNGG 4 cut(s) 13, 217, 430, 552
BstV1I GCAGC 2 cut(s) 324, 376
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BtsCI GGATG 1 cut(s) 565
CciI TCATGA 2 cut(s) 208, 421
CfoI GCGC 1 cut(s) 444
Cfr13I GGNCC 1 cut(s) 231
Csp6I GTAC 4 cut(s) 34, 136, 266, 496
CviAII CATG 4 cut(s) 209, 422, 473, 521
CviQI GTAC 4 cut(s) 34, 136, 266, 496
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 447
Eco47I GGWCC 1 cut(s) 231
Eco47III AGCGCT 1 cut(s) 443
EcoRII CCWGG 4 cut(s) 13, 217, 430, 552
EcoT14I CCWWGG 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 4 cut(s) 212, 425, 476, 524
FaiI YATR 5 cut(s) 117, 210, 423, 474, 522
FatI CATG 4 cut(s) 208, 421, 472, 520
Fnu4HI GCNGC 2 cut(s) 313, 365
FokI GGATG 1 cut(s) 552
Fsp4HI GCNGC 2 cut(s) 313, 365
FspBI CTAG 3 cut(s) 309, 386, 491
GlaI GCGC 1 cut(s) 443
GluI GCNGC 2 cut(s) 313, 365
HaeII RGCGCY 1 cut(s) 445
HhaI GCGC 1 cut(s) 444
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 4 cut(s) 212, 425, 476, 524
Hin6I GCGC 1 cut(s) 442
HinP1I GCGC 1 cut(s) 442
HincII GTYRAC 1 cut(s) 470
HindII GTYRAC 1 cut(s) 470
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 2 cut(s) 82, 112
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 3 cut(s) 266, 470, 496
Hpy188I TCNGA 2 cut(s) 97, 126
Hpy188III TCNNGA 5 cut(s) 90, 209, 394, 422, 544
Hpy8I GTNNAC 3 cut(s) 266, 470, 496
HpyCH4III ACNGT 1 cut(s) 467
HpyCH4IV ACGT 3 cut(s) 49, 205, 252
HpyCH4V TGCA 2 cut(s) 364, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpySE526I ACGT 3 cut(s) 49, 205, 252
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 4 cut(s) 212, 425, 476, 524
HspAI GCGC 1 cut(s) 442
Kzo9I GATC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 449
Lsp1109I GCAGC 2 cut(s) 324, 376
MaeI CTAG 3 cut(s) 309, 386, 491
MaeII ACGT 3 cut(s) 49, 205, 252
MaeIII GTNAC 1 cut(s) 529
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 4 cut(s) 41, 91, 350, 547
MfeI CAATTG 1 cut(s) 288
MflI RGATCY 1 cut(s) 92
MluCI AATT 4 cut(s) 147, 288, 435, 547
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 1 cut(s) 206
MseI TTAA 5 cut(s) 161, 225, 371, 438, 480
MspR9I CCNGG 4 cut(s) 15, 219, 432, 554
MunI CAATTG 1 cut(s) 288
MvaI CCWGG 4 cut(s) 15, 219, 432, 554
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeII GATC 1 cut(s) 92
NlaIII CATG 4 cut(s) 212, 425, 476, 524
NspI RCATGY 2 cut(s) 476, 524
NspV TTCGAA 1 cut(s) 336
PagI TCATGA 2 cut(s) 208, 421
PciI ACATGT 1 cut(s) 520
PfeI GAWTC 1 cut(s) 82
PfoI TCCNGGA 2 cut(s) 430, 552
PkrI GCNGC 2 cut(s) 314, 366
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
Ppu21I YACGTR 2 cut(s) 50, 253
PscI ACATGT 1 cut(s) 520
Psp6I CCWGG 4 cut(s) 13, 217, 430, 552
PspGI CCWGG 4 cut(s) 13, 217, 430, 552
PspPI GGNCC 1 cut(s) 231
PsuI RGATCY 1 cut(s) 92
RsaI GTAC 4 cut(s) 35, 137, 267, 497
RsaNI GTAC 4 cut(s) 34, 136, 266, 496
SaqAI TTAA 5 cut(s) 161, 225, 371, 438, 480
SatI GCNGC 2 cut(s) 313, 365
Sau3AI GATC 1 cut(s) 92
Sau96I GGNCC 1 cut(s) 231
ScaI AGTACT 2 cut(s) 35, 137
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 4 cut(s) 15, 219, 432, 554
SetI ASST 9 cut(s) 52, 56, 123, 198, 208, 216, 255, 262, 429
SfuI TTCGAA 1 cut(s) 336
SinI GGWCC 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
SpeI ACTAGT 1 cut(s) 490
Sse9I AATT 4 cut(s) 147, 288, 435, 547
SspMI CTAG 3 cut(s) 309, 386, 491
StyD4I CCNGG 4 cut(s) 13, 217, 430, 552
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 1 cut(s) 467
TaiI ACGT 3 cut(s) 52, 208, 255
TaqI TCGA 2 cut(s) 239, 336
TasI AATT 4 cut(s) 147, 288, 435, 547
TatI WGTACW 3 cut(s) 33, 135, 265
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 5 cut(s) 161, 225, 371, 438, 480
Tru9I TTAA 5 cut(s) 161, 225, 371, 438, 480
TseI GCWGC 2 cut(s) 312, 364
TspDTI ATGAA 2 cut(s) 42, 120
VpaK11BI GGWCC 1 cut(s) 231
XapI RAATTY 1 cut(s) 547
XceI RCATGY 2 cut(s) 476, 524
XspI CTAG 3 cut(s) 309, 386, 491
ZraI GACGTC 1 cut(s) 206
ZrmI AGTACT 2 cut(s) 35, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.