Rh1BG265400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0018233
Physical Location & Seq
Reverse (-)
39959166 .. 39959959
794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG265400.1

Sequence Viewer

Length: 489 bp
ATGGCTGGTAATCCTGGTATTGAGAATGAAGAGTACTTCACACCGCCACGTAGCTTCTCATCATCATTGAAAATGCCGAAGAATCTCTCAAGATCTGATGATAATGAAAAGACTCATAAGCTTCGGAGAAACAAGTACTCCAAAGCAATTTTGAAGCACTTAAACAAGGCTAAAGCCATCAAAAAGCCAATAAACCTCGCAAGACGTCATGAGCTTCCTGGGATTAAGTGGTCCAAGTGGATTTTACAACACGTAAAAGGTTGTGTACTCATCAAAAAGCCAACAACAATTGGTGATGACAAAGAAACTGGCAGCAACAACAACCCTACTCTTTTCGAAGACAAATACTCAGAAGCGATTTTGCAGCACTTTAACAAGGCTTATCTAGCCATCAAGAAGTCAATAAGTAAGGCAAGATGTCATGAGGTTGCTGGAATTAAGCGCTCCAAGGAGATTTTACAACACAGTCAACACTTAAAACAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.59

Weight (kDa)

9.98

Isoelectric Point (pI)

60.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 208
AciI CCGC 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 205
AfaI GTAC 3 cut(s) 35, 137, 267
AfeI AGCGCT 1 cut(s) 443
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 2 cut(s) 70, 154
AjnI CCWGG 2 cut(s) 13, 217
AluBI AGCT 3 cut(s) 54, 121, 214
AluI AGCT 3 cut(s) 54, 121, 214
Aor51HI AGCGCT 1 cut(s) 443
ApeKI GCWGC 2 cut(s) 312, 364
AspLEI GCGC 1 cut(s) 444
AspS9I GGNCC 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 305
AsuII TTCGAA 1 cut(s) 336
AvaII GGWCC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 345
BbvI GCAGC 2 cut(s) 324, 376
BccI CCATC 2 cut(s) 185, 398
BciT130I CCWGG 2 cut(s) 15, 219
BfaI CTAG 2 cut(s) 386, 487
BfoI RGCGCY 1 cut(s) 445
BglII AGATCT 1 cut(s) 92
BisI GCNGC 2 cut(s) 313, 365
BlsI GCNGC 2 cut(s) 314, 366
BmcAI AGTACT 2 cut(s) 35, 137
Bme1390I CCNGG 2 cut(s) 15, 219
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 231
BmrFI CCNGG 2 cut(s) 15, 219
BpiI GAAGAC 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 73
BsaAI YACGTR 2 cut(s) 50, 253
BsaHI GRCGYC 1 cut(s) 205
BsaJI CCNNGG 2 cut(s) 218, 447
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bse1I ACTGG 1 cut(s) 313
BseBI CCWGG 2 cut(s) 15, 219
BseDI CCNNGG 2 cut(s) 218, 447
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 313
BseXI GCAGC 2 cut(s) 324, 376
Bsp119I TTCGAA 1 cut(s) 336
Bsp143I GATC 1 cut(s) 92
BspACI CCGC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 362
BspHI TCATGA 2 cut(s) 208, 421
BspT104I TTCGAA 1 cut(s) 336
BsrI ACTGG 1 cut(s) 313
BssECI CCNNGG 2 cut(s) 218, 447
BssMI GATC 1 cut(s) 92
BssNI GRCGYC 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 2 cut(s) 15, 219
Bst4CI ACNGT 1 cut(s) 467
Bst6I CTCTTC 1 cut(s) 24
BstACI GRCGYC 1 cut(s) 205
BstBAI YACGTR 2 cut(s) 50, 253
BstBI TTCGAA 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 349
BstH2I RGCGCY 1 cut(s) 445
BstHHI GCGC 1 cut(s) 444
BstKTI GATC 1 cut(s) 95
BstMBI GATC 1 cut(s) 92
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 2 cut(s) 15, 219
BstSCI CCNGG 2 cut(s) 13, 217
BstV1I GCAGC 2 cut(s) 324, 376
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
CciI TCATGA 2 cut(s) 208, 421
CfoI GCGC 1 cut(s) 444
Cfr13I GGNCC 1 cut(s) 231
Csp6I GTAC 3 cut(s) 34, 136, 266
CviAII CATG 2 cut(s) 209, 422
CviQI GTAC 3 cut(s) 34, 136, 266
DdeI CTNAG 1 cut(s) 349
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 447
Eco47I GGWCC 1 cut(s) 231
Eco47III AGCGCT 1 cut(s) 443
EcoRII CCWGG 2 cut(s) 13, 217
EcoT14I CCWWGG 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 2 cut(s) 212, 425
FaiI YATR 3 cut(s) 117, 210, 423
FatI CATG 2 cut(s) 208, 421
Fnu4HI GCNGC 2 cut(s) 313, 365
Fsp4HI GCNGC 2 cut(s) 313, 365
FspBI CTAG 2 cut(s) 386, 487
GlaI GCGC 1 cut(s) 443
GluI GCNGC 2 cut(s) 313, 365
HaeII RGCGCY 1 cut(s) 445
HhaI GCGC 1 cut(s) 444
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 2 cut(s) 212, 425
Hin6I GCGC 1 cut(s) 442
HinP1I GCGC 1 cut(s) 442
HincII GTYRAC 1 cut(s) 470
HindII GTYRAC 1 cut(s) 470
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 2 cut(s) 82, 112
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 2 cut(s) 266, 470
Hpy188I TCNGA 3 cut(s) 97, 126, 352
Hpy188III TCNNGA 4 cut(s) 90, 209, 394, 422
Hpy8I GTNNAC 2 cut(s) 266, 470
HpyCH4III ACNGT 1 cut(s) 467
HpyCH4IV ACGT 3 cut(s) 49, 205, 252
HpyCH4V TGCA 1 cut(s) 364
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 1 cut(s) 349
HpySE526I ACGT 3 cut(s) 49, 205, 252
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 2 cut(s) 212, 425
HspAI GCGC 1 cut(s) 442
Kzo9I GATC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 449
LpnPI CCDG 5 cut(s) 27, 204, 231, 294, 417
Lsp1109I GCAGC 2 cut(s) 324, 376
MaeI CTAG 2 cut(s) 386, 487
MaeII ACGT 3 cut(s) 49, 205, 252
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 3 cut(s) 41, 91, 350
MfeI CAATTG 1 cut(s) 288
MflI RGATCY 1 cut(s) 92
MluCI AATT 3 cut(s) 147, 288, 435
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 2 cut(s) 206, 418
MseI TTAA 5 cut(s) 161, 225, 372, 438, 476
MspR9I CCNGG 2 cut(s) 15, 219
MunI CAATTG 1 cut(s) 288
MvaI CCWGG 2 cut(s) 15, 219
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeII GATC 1 cut(s) 92
NlaIII CATG 2 cut(s) 212, 425
NspV TTCGAA 1 cut(s) 336
PagI TCATGA 2 cut(s) 208, 421
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 2 cut(s) 314, 366
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
Ppu21I YACGTR 2 cut(s) 50, 253
Psp6I CCWGG 2 cut(s) 13, 217
PspGI CCWGG 2 cut(s) 13, 217
PspPI GGNCC 1 cut(s) 231
PsuI RGATCY 1 cut(s) 92
RsaI GTAC 3 cut(s) 35, 137, 267
RsaNI GTAC 3 cut(s) 34, 136, 266
SaqAI TTAA 5 cut(s) 161, 225, 372, 438, 476
SatI GCNGC 2 cut(s) 313, 365
Sau3AI GATC 1 cut(s) 92
Sau96I GGNCC 1 cut(s) 231
ScaI AGTACT 2 cut(s) 35, 137
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 2 cut(s) 15, 219
SetI ASST 9 cut(s) 52, 56, 123, 198, 208, 216, 255, 262, 429
SfuI TTCGAA 1 cut(s) 336
SinI GGWCC 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 3 cut(s) 147, 288, 435
SsiI CCGC 1 cut(s) 44
SspMI CTAG 2 cut(s) 386, 487
StyD4I CCNGG 2 cut(s) 13, 217
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 1 cut(s) 467
TaiI ACGT 3 cut(s) 52, 208, 255
TaqI TCGA 1 cut(s) 336
TasI AATT 3 cut(s) 147, 288, 435
TatI WGTACW 3 cut(s) 33, 135, 265
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 5 cut(s) 161, 225, 372, 438, 476
Tru9I TTAA 5 cut(s) 161, 225, 372, 438, 476
TseI GCWGC 2 cut(s) 312, 364
TspDTI ATGAA 2 cut(s) 42, 120
VpaK11BI GGWCC 1 cut(s) 231
XspI CTAG 2 cut(s) 386, 487
ZraI GACGTC 1 cut(s) 206
ZrmI AGTACT 2 cut(s) 35, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.