RLG00000016946

Osmotin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0020027
Physical Location & Seq
Reverse (-)
11475268 .. 11475728
461 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016946

Sequence Viewer

Length: 381 bp
ATGACCCGTGGTCAGCAACTGACCCTTCCCTATCTGGCCCGACATCCAGCCCAACTCCGGCAGCCCCGTCCTCGAAAATTACAGGCAGCTCCCACTCGACCAACCACTTCTCCTGCATCACCGGCGACTAGCAAGCTAGAGTGCAACGGCGCCGGCGCAGCCCCCGCAACTCTTGCCTGGTTCGTCCTCCACCACGGCCCCAACGACAATGGTCTATGGAGTCAAAGAGAGAGAGAGAAGTTGAAAAAGCTCCGACTGCTTGACGCGTCCATGAACCGGCTGACGGGGCCGATTCCCGACGAGTTGACTCGGCTGGAAGGCTTGAATCTTTATGAGAACAACTTTAGGGGAGCTTGCTGGCGCGCATTGCAGACTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

127

Amino Acids

14.15

Weight (kDa)

10.84

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020027)

Species Orthologous Gene IDs
rosa_laevigata RLG00000016946
rosa_multiflora Rmu_sc0000157.1_g000040 Rmu_sc0002819.1_g000008 Rmu_sc0004199.1_g000024 Rmu_sc0035221.1_g000001
rosa_roxburghii Rroxscaffold_2G00140740
rosa_samantha Rh5CG217800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 149
AccII CGCG 2 cut(s) 266, 363
AciI CCGC 1 cut(s) 165
AcyI GRCGYC 1 cut(s) 150
AfiI CCNNNNNNNGG 3 cut(s) 57, 276, 283
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 2 cut(s) 244, 325
AhdI GACNNNNNGTC 1 cut(s) 9
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 4 cut(s) 89, 136, 250, 353
AluI AGCT 4 cut(s) 89, 136, 250, 353
AlwNI CAGNNNCTG 1 cut(s) 19
AoxI GGCC 3 cut(s) 36, 196, 287
ApeKI GCWGC 3 cut(s) 61, 86, 158
AspLEI GCGC 4 cut(s) 152, 158, 363, 365
AspS9I GGNCC 3 cut(s) 37, 197, 287
AsuHPI GGTGA 1 cut(s) 111
BanI GGYRCC 1 cut(s) 149
BbvI GCAGC 3 cut(s) 73, 98, 170
BceAI ACGGC 2 cut(s) 163, 211
BciT130I CCWGG 1 cut(s) 178
BfaI CTAG 2 cut(s) 129, 137
BfoI RGCGCY 1 cut(s) 153
BisI GCNGC 3 cut(s) 62, 87, 159
BlsI GCNGC 3 cut(s) 63, 88, 160
Bme1390I CCNGG 1 cut(s) 178
BmeRI GACNNNNNGTC 1 cut(s) 9
BmgT120I GGNCC 3 cut(s) 37, 197, 287
BmiI GGNNCC 3 cut(s) 151, 199, 288
BmrFI CCNGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 125
BoxI GACNNNNGTC 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 7, 193
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 276, 283
Bse118I RCCGGY 3 cut(s) 121, 152, 276
Bse3DI GCAATG 1 cut(s) 365
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 2 cut(s) 7, 193
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 3 cut(s) 57, 276, 283
BseMI GCAATG 1 cut(s) 365
BsePI GCGCGC 1 cut(s) 361
BseXI GCAGC 3 cut(s) 73, 98, 170
Bsh1236I CGCG 2 cut(s) 266, 363
BshFI GGCC 3 cut(s) 38, 198, 289
BshNI GGYRCC 1 cut(s) 149
BsiSI CCGG 4 cut(s) 58, 122, 153, 277
BslI CCNNNNNNNGG 3 cut(s) 57, 276, 283
BsnI GGCC 3 cut(s) 38, 198, 289
BspACI CCGC 1 cut(s) 165
BspANI GGCC 3 cut(s) 38, 198, 289
BspFNI CGCG 2 cut(s) 266, 363
BspLI GGNNCC 3 cut(s) 151, 199, 288
BspT107I GGYRCC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 365
BsrFI RCCGGY 3 cut(s) 121, 152, 276
BssAI RCCGGY 3 cut(s) 121, 152, 276
BssECI CCNNGG 2 cut(s) 7, 193
BssHII GCGCGC 1 cut(s) 361
BssNI GRCGYC 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 178
BstACI GRCGYC 1 cut(s) 150
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 5 cut(s) 134, 154, 355, 359, 363
BstDSI CCRYGG 2 cut(s) 7, 193
BstF5I GGATG 1 cut(s) 43
BstFNI CGCG 2 cut(s) 266, 363
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 4 cut(s) 152, 158, 363, 365
BstMWI GCNNNNNNNGC 7 cut(s) 122, 158, 164, 173, 256, 286, 367
BstNI CCWGG 1 cut(s) 178
BstPAI GACNNNNGTC 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 176
BstUI CGCG 2 cut(s) 266, 363
BstV1I GCAGC 3 cut(s) 73, 98, 170
BsuRI GGCC 3 cut(s) 38, 198, 289
BtgI CCRYGG 2 cut(s) 7, 193
BtsCI GGATG 1 cut(s) 43
Cac8I GCNNGC 5 cut(s) 134, 154, 355, 359, 363
CaiI CAGNNNCTG 1 cut(s) 19
CfoI GCGC 4 cut(s) 152, 158, 363, 365
Cfr10I RCCGGY 3 cut(s) 121, 152, 276
Cfr13I GGNCC 3 cut(s) 37, 197, 287
CseI GACGC 2 cut(s) 255, 272
CviAII CATG 1 cut(s) 271
DinI GGCGCC 1 cut(s) 151
DriI GACNNNNNGTC 1 cut(s) 9
Eam1105I GACNNNNNGTC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 176
EgeI GGCGCC 1 cut(s) 151
EheI GGCGCC 1 cut(s) 151
FaeI CATG 1 cut(s) 274
FaiI YATR 3 cut(s) 217, 272, 333
FatI CATG 1 cut(s) 270
FauI CCCGC 1 cut(s) 172
Fnu4HI GCNGC 3 cut(s) 62, 87, 159
FokI GGATG 1 cut(s) 30
Fsp4HI GCNGC 3 cut(s) 62, 87, 159
FspBI CTAG 2 cut(s) 129, 137
GlaI GCGC 4 cut(s) 151, 157, 362, 364
GluI GCNGC 3 cut(s) 62, 87, 159
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 3 cut(s) 38, 198, 289
HapII CCGG 4 cut(s) 58, 122, 153, 277
HgaI GACGC 2 cut(s) 255, 272
HhaI GCGC 4 cut(s) 152, 158, 363, 365
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 4 cut(s) 150, 156, 361, 363
HinP1I GCGC 4 cut(s) 150, 156, 361, 363
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 5 cut(s) 220, 292, 307, 325, 373
HpaII CCGG 4 cut(s) 58, 122, 153, 277
HphI GGTGA 1 cut(s) 111
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 1 cut(s) 254
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 1 cut(s) 306
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 2 cut(s) 35, 311
HpyCH4V TGCA 3 cut(s) 116, 144, 370
HpyF10VI GCNNNNNNNGC 7 cut(s) 122, 158, 164, 173, 256, 286, 367
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 4 cut(s) 150, 156, 361, 363
KasI GGCGCC 1 cut(s) 149
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
LmnI GCTCC 3 cut(s) 94, 255, 350
Lsp1109I GCAGC 3 cut(s) 73, 98, 170
LweI GCATC 1 cut(s) 125
MaeI CTAG 2 cut(s) 129, 137
MluCI AATT 1 cut(s) 77
MluI ACGCGT 1 cut(s) 264
Mly113I GGCGCC 1 cut(s) 150
MlyI GAGTC 3 cut(s) 229, 301, 367
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 2 cut(s) 81, 197
MreI CGCCGGCG 1 cut(s) 152
MroNI GCCGGC 1 cut(s) 152
MspI CCGG 4 cut(s) 58, 122, 153, 277
MspR9I CCNGG 1 cut(s) 178
MvaI CCWGG 1 cut(s) 178
MvnI CGCG 2 cut(s) 266, 363
MwoI GCNNNNNNNGC 7 cut(s) 122, 158, 164, 173, 256, 286, 367
NaeI GCCGGC 1 cut(s) 154
NarI GGCGCC 1 cut(s) 150
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 3 cut(s) 151, 199, 288
NmeAIII GCCGAG 1 cut(s) 289
PauI GCGCGC 1 cut(s) 361
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PdiI GCCGGC 1 cut(s) 154
PfeI GAWTC 2 cut(s) 292, 325
PkrI GCNGC 3 cut(s) 63, 88, 160
PleI GAGTC 3 cut(s) 228, 301, 367
PluTI GGCGCC 1 cut(s) 153
PpsI GAGTC 3 cut(s) 228, 301, 367
PshAI GACNNNNGTC 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 3 cut(s) 151, 199, 288
PspPI GGNCC 3 cut(s) 37, 197, 287
PstNI CAGNNNCTG 1 cut(s) 19
PteI GCGCGC 1 cut(s) 361
SatI GCNGC 3 cut(s) 62, 87, 159
Sau96I GGNCC 3 cut(s) 37, 197, 287
SchI GAGTC 3 cut(s) 229, 301, 367
ScrFI CCNGG 1 cut(s) 178
SetI ASST 4 cut(s) 91, 138, 252, 355
SfaNI GCATC 1 cut(s) 125
SfoI GGCGCC 1 cut(s) 151
SgrAI CRCCGGYG 2 cut(s) 121, 152
Sse9I AATT 1 cut(s) 77
SsiI CCGC 1 cut(s) 165
SspDI GGCGCC 1 cut(s) 149
SspMI CTAG 2 cut(s) 129, 137
StyD4I CCNGG 1 cut(s) 176
TaqI TCGA 2 cut(s) 73, 97
TasI AATT 1 cut(s) 77
TfiI GAWTC 2 cut(s) 292, 325
TseI GCWGC 3 cut(s) 61, 86, 158
TspDTI ATGAA 1 cut(s) 287
XspI CTAG 2 cut(s) 129, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.