Rmu_sc0002819.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002819.1
OG0020027
Physical Location & Seq
Reverse (-)
50714 .. 51031
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002819.1_g000008.1.cds

Sequence Viewer

Length: 318 bp
ctgtcgaccaactcgagctcggaccgaagttcctccggggtcgctcaagctccggacaccaccacacttgggcgacacgagccggatgtccatgagaatctcgccaaaggtctctacagagctgaggcggcgcaggatgtacggcgacaacagagagagagagagagagaagttgaaaaagcttcggctgctcgacgcgtccatgaatcggctgacggggccgattcccgacgagttgctcggctggagctggaaggcttgaatctttacgagaacaacttgaggggagcttgccggagcgcattgcagactcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.66

Weight (kDa)

8.18

Isoelectric Point (pI)

55.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020027)

Species Orthologous Gene IDs
rosa_laevigata RLG00000016946
rosa_multiflora Rmu_sc0000157.1_g000040 Rmu_sc0002819.1_g000008 Rmu_sc0004199.1_g000024 Rmu_sc0035221.1_g000001
rosa_roxburghii Rroxscaffold_2G00140740
rosa_samantha Rh5CG217800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 198
AccIII TCCGGA 1 cut(s) 52
AciI CCGC 1 cut(s) 128
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 69, 208
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 2 cut(s) 176, 262
AluBI AGCT 6 cut(s) 18, 50, 122, 182, 250, 290
AluI AGCT 6 cut(s) 18, 50, 122, 182, 250, 290
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 116
Ama87I CYCGRG 1 cut(s) 13
Aor13HI TCCGGA 1 cut(s) 52
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 1 cut(s) 188
AspLEI GCGC 2 cut(s) 133, 302
AspS9I GGNCC 2 cut(s) 22, 219
AsuC2I CCSGG 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 13
AvaII GGWCC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 20
BauI CACGAG 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 20
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 175
BceAI ACGGC 1 cut(s) 158
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 115
BisI GCNGC 2 cut(s) 129, 189
BlsI GCNGC 2 cut(s) 130, 190
Bme1390I CCNGG 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 22, 219
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 266
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 2 cut(s) 30, 301
BpuMI CCSGG 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 208
Bse3DI GCAATG 1 cut(s) 302
BseAI TCCGGA 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 2 cut(s) 91, 142
BseLI CCNNNNNNNGG 2 cut(s) 69, 208
BseMI GCAATG 1 cut(s) 302
BseMII CTCAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 175
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 20
BsiHKCI CYCGRG 1 cut(s) 13
BsiSI CCGG 4 cut(s) 36, 53, 83, 295
BslI CCNNNNNNNGG 2 cut(s) 69, 208
BsmAI GTCTC 1 cut(s) 116
BsnI GGCC 1 cut(s) 221
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 20
Bsp13I TCCGGA 1 cut(s) 52
BspACI CCGC 1 cut(s) 128
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 1 cut(s) 115
BspEI TCCGGA 1 cut(s) 52
BspFNI CGCG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 220
BspTNI GGTCTC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 36
BssSI CACGAG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 91, 142
BstFNI CGCG 1 cut(s) 198
BstHHI GCGC 2 cut(s) 133, 302
BstMAI GTCTC 1 cut(s) 116
BstMWI GCNNNNNNNGC 4 cut(s) 79, 128, 188, 218
BstSCI CCNGG 1 cut(s) 35
BstSFI CTRYAG 1 cut(s) 115
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 175
BsuRI GGCC 1 cut(s) 221
BtsCI GGATG 2 cut(s) 91, 142
Cac8I GCNNGC 1 cut(s) 292
CfoI GCGC 2 cut(s) 133, 302
Cfr13I GGNCC 2 cut(s) 22, 219
CpoI CGGWCCG 1 cut(s) 22
CseI GACGC 2 cut(s) 187, 204
Csp6I GTAC 1 cut(s) 140
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CspI CGGWCCG 1 cut(s) 22
CviAII CATG 2 cut(s) 92, 203
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 1 cut(s) 123
Ecl136II GAGCTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 22
Eco53kI GAGCTC 1 cut(s) 18
Eco88I CYCGRG 1 cut(s) 13
EcoICRI GAGCTC 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 20
FaeI CATG 2 cut(s) 95, 206
FaiI YATR 2 cut(s) 93, 204
FatI CATG 2 cut(s) 91, 202
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 129, 189
FokI GGATG 2 cut(s) 98, 149
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 129, 189
GlaI GCGC 2 cut(s) 132, 301
GluI GCNGC 2 cut(s) 129, 189
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 1 cut(s) 221
HapII CCGG 4 cut(s) 36, 53, 83, 295
HgaI GACGC 2 cut(s) 187, 204
HhaI GCGC 2 cut(s) 133, 302
Hin1II CATG 2 cut(s) 95, 206
Hin6I GCGC 2 cut(s) 131, 300
HinP1I GCGC 2 cut(s) 131, 300
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 180
HinfI GANTC 5 cut(s) 97, 206, 224, 262, 310
HpaII CCGG 4 cut(s) 36, 53, 83, 295
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 2 cut(s) 53, 228
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 2 cut(s) 198, 234
HpyAV CCTTC 1 cut(s) 248
HpyCH4V TGCA 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 4 cut(s) 79, 128, 188, 218
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 2 cut(s) 95, 206
HspAI GCGC 2 cut(s) 131, 300
Kpn2I TCCGGA 1 cut(s) 52
LmnI GCTCC 4 cut(s) 55, 247, 287, 297
LpnPI CCDG 7 cut(s) 49, 66, 96, 119, 230, 236, 308
Lsp1109I GCAGC 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 20
MluI ACGCGT 1 cut(s) 196
MlyI GAGTC 1 cut(s) 304
MnlI CCTC 3 cut(s) 43, 118, 276
MroI TCCGGA 1 cut(s) 52
MspI CCGG 4 cut(s) 36, 53, 83, 295
MspR9I CCNGG 1 cut(s) 37
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 4 cut(s) 79, 128, 188, 218
NciI CCSGG 1 cut(s) 37
NlaIII CATG 2 cut(s) 95, 206
NlaIV GGNNCC 1 cut(s) 220
NmeAIII GCCGAG 1 cut(s) 220
PaeR7I CTCGAG 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PfeI GAWTC 4 cut(s) 97, 206, 224, 262
PkrI GCNGC 2 cut(s) 130, 190
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
Psp124BI GAGCTC 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 2 cut(s) 22, 219
PspXI VCTCGAGB 1 cut(s) 13
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
Rsr2I CGGWCCG 1 cut(s) 22
RsrII CGGWCCG 1 cut(s) 22
SacI GAGCTC 1 cut(s) 20
SalI GTCGAC 1 cut(s) 4
SatI GCNGC 2 cut(s) 129, 189
Sau96I GGNCC 2 cut(s) 22, 219
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 1 cut(s) 37
SduI GDGCHC 1 cut(s) 20
SetI ASST 7 cut(s) 20, 52, 112, 124, 184, 252, 292
SfcI CTRYAG 1 cut(s) 115
Sfr274I CTCGAG 1 cut(s) 13
SinI GGWCC 1 cut(s) 22
SlaI CTCGAG 1 cut(s) 13
SmlI CTYRAG 3 cut(s) 13, 45, 280
SmoI CTYRAG 3 cut(s) 13, 45, 280
SsiI CCGC 1 cut(s) 128
SstI GAGCTC 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 35
TaqI TCGA 3 cut(s) 5, 14, 193
TaqII GACCGA 1 cut(s) 39
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 4 cut(s) 97, 206, 224, 262
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 22
XhoI CTCGAG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.