Rh5CG217800

Osmotin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0020027
Physical Location & Seq
Forward (+)
22133581 .. 22133925
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG217800.1

Sequence Viewer

Length: 345 bp
ATGGCCCGTGGTCAACAACTGACCTTTCCCTATCTGGTCCGCCATCCAGCTCAACTCCGGCAGCCCCGTCCTCGAAAATTACGATTCGCCCTCCCCAGCCTCACCCACCACTCCTTCCCTGCTCCGACCCAGACCTGGTCAGGCCGGATCTTGGCCCGTACAGGCAGCTCCCACTTGACCAACCACTTCTCCTGCCTCACGGGTGACTGCGGCAGCAAGCTAGAGTGCAACGGTGCCGGCGCAGCCCCCGGAACTCTTGCCCGGTTCGTTCTCCACCACGGCCCCAACGACAATGGTCTACGACATCAGAGAGAGAGAGAAGTTGAAAAAACTCTGGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

114

Amino Acids

12.61

Weight (kDa)

11.09

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 21 - 95 7.4e-14 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020027)

Species Orthologous Gene IDs
rosa_laevigata RLG00000016946
rosa_multiflora Rmu_sc0000157.1_g000040 Rmu_sc0002819.1_g000008 Rmu_sc0004199.1_g000024 Rmu_sc0035221.1_g000001
rosa_roxburghii Rroxscaffold_2G00140740
rosa_samantha Rh5CG217800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 233
AccI GTMKAC 1 cut(s) 298
AciI CCGC 2 cut(s) 40, 210
AclWI GGATC 1 cut(s) 155
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 2 cut(s) 135, 151
AgsI TTSAA 1 cut(s) 326
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 3 cut(s) 50, 168, 220
AluI AGCT 3 cut(s) 50, 168, 220
AlwI GGATC 1 cut(s) 155
AoxI GGCC 4 cut(s) 3, 142, 153, 280
ApeKI GCWGC 5 cut(s) 61, 165, 213, 242, 338
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 4 cut(s) 4, 37, 154, 281
AsuC2I CCSGG 2 cut(s) 249, 262
AsuHPI GGTGA 2 cut(s) 94, 215
AvaII GGWCC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 233
BbvI GCAGC 5 cut(s) 73, 177, 225, 254, 325
BccI CCATC 1 cut(s) 51
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 136
BcnI CCSGG 2 cut(s) 249, 262
BfaI CTAG 1 cut(s) 221
BisI GCNGC 6 cut(s) 62, 166, 211, 214, 243, 339
BlsI GCNGC 6 cut(s) 63, 167, 212, 215, 244, 340
Bme1390I CCNGG 3 cut(s) 136, 249, 262
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 4 cut(s) 4, 37, 154, 281
BmiI GGNNCC 2 cut(s) 235, 283
BmrFI CCNGG 3 cut(s) 136, 249, 262
BoxI GACNNNNGTC 1 cut(s) 294
BpuMI CCSGG 2 cut(s) 249, 262
BsaJI CCNNGG 3 cut(s) 7, 247, 277
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 151
Bse118I RCCGGY 1 cut(s) 236
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 3 cut(s) 7, 247, 277
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 2 cut(s) 135, 151
BseXI GCAGC 5 cut(s) 73, 177, 225, 254, 325
BseYI CCCAGC 1 cut(s) 95
BshFI GGCC 4 cut(s) 5, 144, 155, 282
BshNI GGYRCC 1 cut(s) 233
BsiSI CCGG 5 cut(s) 58, 145, 237, 249, 262
BslI CCNNNNNNNGG 2 cut(s) 135, 151
BsnI GGCC 4 cut(s) 5, 144, 155, 282
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 2 cut(s) 40, 210
BspANI GGCC 4 cut(s) 5, 144, 155, 282
BspLI GGNNCC 2 cut(s) 235, 283
BspPI GGATC 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 3 cut(s) 7, 247, 277
BssMI GATC 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 233
BstC8I GCNNGC 2 cut(s) 218, 238
BstDSI CCRYGG 2 cut(s) 7, 277
BstF5I GGATG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 136
BstPAI GACNNNNGTC 1 cut(s) 294
BstSCI CCNGG 3 cut(s) 134, 247, 260
BstV1I GCAGC 5 cut(s) 73, 177, 225, 254, 325
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BsuRI GGCC 4 cut(s) 5, 144, 155, 282
BtgI CCRYGG 2 cut(s) 7, 277
BtsCI GGATG 1 cut(s) 43
Cac8I GCNNGC 2 cut(s) 218, 238
CfoI GCGC 1 cut(s) 242
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 4 cut(s) 4, 37, 154, 281
CsiI ACCWGGT 1 cut(s) 134
Csp6I GTAC 1 cut(s) 159
CviQI GTAC 1 cut(s) 159
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
EciI GGCGGA 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 134
FblI GTMKAC 1 cut(s) 298
Fnu4HI GCNGC 6 cut(s) 62, 166, 211, 214, 243, 339
FokI GGATG 1 cut(s) 30
Fsp4HI GCNGC 6 cut(s) 62, 166, 211, 214, 243, 339
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 241
GluI GCNGC 6 cut(s) 62, 166, 211, 214, 243, 339
GsaI CCCAGC 1 cut(s) 99
HaeIII GGCC 4 cut(s) 5, 144, 155, 282
HapII CCGG 5 cut(s) 58, 145, 237, 249, 262
HhaI GCGC 1 cut(s) 242
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HincII GTYRAC 1 cut(s) 14
HindII GTYRAC 1 cut(s) 14
HinfI GANTC 1 cut(s) 84
HpaII CCGG 5 cut(s) 58, 145, 237, 249, 262
HphI GGTGA 2 cut(s) 94, 215
Hpy166II GTNNAC 2 cut(s) 14, 299
Hpy188I TCNGA 2 cut(s) 126, 309
Hpy8I GTNNAC 2 cut(s) 14, 299
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HspAI GCGC 1 cut(s) 240
KroI GCCGGC 1 cut(s) 236
KroNI GCCGGC 1 cut(s) 238
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 2 cut(s) 127, 173
Lsp1109I GCAGC 5 cut(s) 73, 177, 225, 254, 325
MabI ACCWGGT 1 cut(s) 134
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 203
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MflI RGATCY 1 cut(s) 147
MluCI AATT 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 4 cut(s) 81, 101, 110, 206
MroNI GCCGGC 1 cut(s) 236
MspI CCGG 5 cut(s) 58, 145, 237, 249, 262
MspR9I CCNGG 3 cut(s) 136, 249, 262
MvaI CCWGG 1 cut(s) 136
MwoI GCNNNNNNNGC 1 cut(s) 242
NaeI GCCGGC 1 cut(s) 238
NciI CCSGG 2 cut(s) 249, 262
NdeII GATC 1 cut(s) 147
NgoMIV GCCGGC 1 cut(s) 236
NlaIV GGNNCC 2 cut(s) 235, 283
NmuCI GTSAC 1 cut(s) 203
PcsI WCGNNNNNNNCGW 2 cut(s) 79, 285
PdiI GCCGGC 1 cut(s) 238
PfeI GAWTC 1 cut(s) 84
PflFI GACNNNGTC 1 cut(s) 136
PkrI GCNGC 6 cut(s) 63, 167, 212, 215, 244, 340
PshAI GACNNNNGTC 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 134
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 235, 283
PspPI GGNCC 4 cut(s) 4, 37, 154, 281
PsuI RGATCY 1 cut(s) 147
PsyI GACNNNGTC 1 cut(s) 136
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
SatI GCNGC 6 cut(s) 62, 166, 211, 214, 243, 339
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 4 cut(s) 4, 37, 154, 281
ScrFI CCNGG 3 cut(s) 136, 249, 262
SetI ASST 5 cut(s) 26, 52, 137, 170, 222
SexAI ACCWGGT 1 cut(s) 134
SinI GGWCC 1 cut(s) 37
Sse9I AATT 1 cut(s) 77
SsiI CCGC 2 cut(s) 40, 210
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 3 cut(s) 134, 247, 260
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 73
TasI AATT 1 cut(s) 77
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 1 cut(s) 84
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 5 cut(s) 61, 165, 213, 242, 338
Tsp45I GTSAC 1 cut(s) 203
Tth111I GACNNNGTC 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 298
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.