Rroxscaffold_2G00140740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0020027
Physical Location & Seq
Forward (+)
79046694 .. 79047251
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00140740.1

Sequence Viewer

Length: 558 bp
ATGTGTAGAGAAGGTCACCACCGGAAAACAAAAAACTGCAATAGCCATCCGGCCCATGGTCAACATGCAACCGACCCTTCCCTATATGGCCGCCATCCAACCCAACTCCCGCAGCCCCATCCTAGAAAAAGGCTGGTTCGCCCTCCCCGCCCTCACCCACCACTCCTTCCCCTTCCGACCCGGACATGGTCGGGCCGTAGCCGGGCCGATGCGCAGCTCCCACTCCAACGACCACTTCTCCGCCTCACCGATGACCGCGGCAGCAAGCTAGAGTGCAACGGCGCCGATGCGAGCCCCACAACTTTGCCCGGTTCGTCCTCCATCATGACCCCAATGACAATAGTCTACGGCGTCGAGAGAGAAAGAGAAGTTGAAAAAGTTCTCGCTGCTCGACCAGTCCATGAACCGGCCGACGGGCCGATTCCCGATGAGTTGACTCGGCCGAAGCCGGGAAGGCTCGAATCTTTACGAGAACAACTTCGAGGGGAGCTTGTCGACTCACCGAAGCTGTACGAGCTCGATGAGAGAGAGAGAGAGAGAGATCTGCGGAGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

21.05

Weight (kDa)

9.54

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020027)

Species Orthologous Gene IDs
rosa_laevigata RLG00000016946
rosa_multiflora Rmu_sc0000157.1_g000040 Rmu_sc0002819.1_g000008 Rmu_sc0004199.1_g000024 Rmu_sc0035221.1_g000001
rosa_roxburghii Rroxscaffold_2G00140740
rosa_samantha Rh5CG217800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 281
AccI GTMKAC 2 cut(s) 345, 495
AccII CGCG 1 cut(s) 258
AciI CCGC 7 cut(s) 91, 110, 148, 241, 256, 258, 547
AcoI YGGCCR 3 cut(s) 88, 408, 440
AcyI GRCGYC 2 cut(s) 282, 351
AfaI GTAC 1 cut(s) 512
AfiI CCNNNNNNNGG 6 cut(s) 56, 186, 202, 406, 413, 449
AgsI TTSAA 1 cut(s) 374
AjuI GAANNNNNNNTTGG 2 cut(s) 219, 251
AluBI AGCT 5 cut(s) 217, 268, 490, 508, 517
AluI AGCT 5 cut(s) 217, 268, 490, 508, 517
Alw21I GWGCWC 1 cut(s) 519
AoxI GGCC 7 cut(s) 51, 88, 193, 204, 408, 416, 440
ApeKI GCWGC 4 cut(s) 112, 214, 261, 386
Asp700I GAANNNNTTC 2 cut(s) 378, 477
AspLEI GCGC 2 cut(s) 214, 284
AspS9I GGNCC 4 cut(s) 52, 193, 204, 416
AsuC2I CCSGG 4 cut(s) 181, 203, 309, 450
AsuHPI GGTGA 4 cut(s) 8, 146, 238, 492
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 2 cut(s) 296, 519
Bbv12I GWGCWC 1 cut(s) 519
BbvI GCAGC 4 cut(s) 124, 226, 273, 373
BccI CCATC 4 cut(s) 54, 102, 126, 329
BceAI ACGGC 3 cut(s) 180, 295, 364
BcnI CCSGG 4 cut(s) 181, 203, 309, 450
BfaI CTAG 2 cut(s) 123, 269
BfoI RGCGCY 1 cut(s) 285
BglI GCCNNNNNGGC 1 cut(s) 454
BglII AGATCT 1 cut(s) 541
BisI GCNGC 6 cut(s) 91, 113, 215, 259, 262, 387
BlsI GCNGC 6 cut(s) 92, 114, 216, 260, 263, 388
Bme1390I CCNGG 4 cut(s) 181, 203, 309, 450
BmgT120I GGNCC 4 cut(s) 52, 193, 204, 416
BmiI GGNNCC 1 cut(s) 283
BmrFI CCNGG 4 cut(s) 181, 203, 309, 450
BmsI GCATC 2 cut(s) 199, 277
BoxI GACNNNNGTC 1 cut(s) 341
BpuMI CCSGG 4 cut(s) 181, 203, 309, 450
BsaHI GRCGYC 2 cut(s) 282, 351
BsaJI CCNNGG 2 cut(s) 55, 256
BsaWI WCCGGW 1 cut(s) 21
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 6 cut(s) 56, 186, 202, 406, 413, 449
Bse118I RCCGGY 1 cut(s) 406
Bse1I ACTGG 1 cut(s) 395
BseDI CCNNGG 2 cut(s) 55, 256
BseGI GGATG 3 cut(s) 46, 94, 118
BseLI CCNNNNNNNGG 6 cut(s) 56, 186, 202, 406, 413, 449
BseNI ACTGG 1 cut(s) 395
BseX3I CGGCCG 2 cut(s) 408, 440
BseXI GCAGC 4 cut(s) 124, 226, 273, 373
Bsh1236I CGCG 1 cut(s) 258
Bsh1285I CGRYCG 2 cut(s) 411, 443
BshFI GGCC 7 cut(s) 53, 90, 195, 206, 410, 418, 442
BshNI GGYRCC 1 cut(s) 281
BsiEI CGRYCG 2 cut(s) 411, 443
BsiHKAI GWGCWC 1 cut(s) 519
BsiSI CCGG 7 cut(s) 22, 50, 181, 202, 309, 407, 449
BslI CCNNNNNNNGG 6 cut(s) 56, 186, 202, 406, 413, 449
BsnI GGCC 7 cut(s) 53, 90, 195, 206, 410, 418, 442
Bsp1286I GDGCHC 2 cut(s) 296, 519
Bsp143I GATC 1 cut(s) 541
Bsp19I CCATGG 1 cut(s) 55
BspACI CCGC 7 cut(s) 91, 110, 148, 241, 256, 258, 547
BspANI GGCC 7 cut(s) 53, 90, 195, 206, 410, 418, 442
BspFNI CGCG 1 cut(s) 258
BspHI TCATGA 1 cut(s) 324
BspLI GGNNCC 1 cut(s) 283
BspT107I GGYRCC 1 cut(s) 281
BsrFI RCCGGY 1 cut(s) 406
BsrI ACTGG 1 cut(s) 395
BssAI RCCGGY 1 cut(s) 406
BssECI CCNNGG 2 cut(s) 55, 256
BssMI GATC 1 cut(s) 541
BssNI GRCGYC 2 cut(s) 282, 351
BssT1I CCWWGG 1 cut(s) 55
BstACI GRCGYC 2 cut(s) 282, 351
BstC8I GCNNGC 2 cut(s) 266, 292
BstDSI CCRYGG 2 cut(s) 55, 256
BstEII GGTNACC 1 cut(s) 14
BstF5I GGATG 3 cut(s) 46, 94, 118
BstFNI CGCG 1 cut(s) 258
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 2 cut(s) 214, 284
BstKTI GATC 1 cut(s) 544
BstMBI GATC 1 cut(s) 541
BstMCI CGRYCG 2 cut(s) 411, 443
BstMWI GCNNNNNNNGC 3 cut(s) 147, 454, 514
BstNSI RCATGY 1 cut(s) 68
BstPAI GACNNNNGTC 1 cut(s) 341
BstPI GGTNACC 1 cut(s) 14
BstSCI CCNGG 4 cut(s) 179, 201, 307, 448
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 4 cut(s) 124, 226, 273, 373
BstX2I RGATCY 1 cut(s) 541
BstYI RGATCY 1 cut(s) 541
BstZI CGGCCG 2 cut(s) 408, 440
BsuRI GGCC 7 cut(s) 53, 90, 195, 206, 410, 418, 442
BtgI CCRYGG 2 cut(s) 55, 256
BtsCI GGATG 3 cut(s) 46, 94, 118
Cac8I GCNNGC 2 cut(s) 266, 292
CciI TCATGA 1 cut(s) 324
CfoI GCGC 2 cut(s) 214, 284
Cfr10I RCCGGY 1 cut(s) 406
Cfr13I GGNCC 4 cut(s) 52, 193, 204, 416
Cfr42I CCGCGG 1 cut(s) 259
CseI GACGC 1 cut(s) 340
Csp6I GTAC 1 cut(s) 511
CviAII CATG 5 cut(s) 56, 65, 186, 325, 401
CviQI GTAC 1 cut(s) 511
DinI GGCGCC 1 cut(s) 283
DpnI GATC 1 cut(s) 543
DpnII GATC 1 cut(s) 541
EaeI YGGCCR 3 cut(s) 88, 408, 440
EagI CGGCCG 2 cut(s) 408, 440
EciI GGCGGA 1 cut(s) 230
Ecl136II GAGCTC 1 cut(s) 517
EclXI CGGCCG 2 cut(s) 408, 440
Eco130I CCWWGG 1 cut(s) 55
Eco24I GRGCYC 2 cut(s) 296, 519
Eco52I CGGCCG 2 cut(s) 408, 440
Eco53kI GAGCTC 1 cut(s) 517
Eco91I GGTNACC 1 cut(s) 14
EcoICRI GAGCTC 1 cut(s) 517
EcoO65I GGTNACC 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 55
EcoT38I GRGCYC 2 cut(s) 296, 519
EgeI GGCGCC 1 cut(s) 283
EheI GGCGCC 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 5 cut(s) 59, 68, 189, 328, 404
FaiI YATR 7 cut(s) 57, 66, 85, 87, 187, 326, 402
FatI CATG 5 cut(s) 55, 64, 185, 324, 400
FauI CCCGC 2 cut(s) 117, 155
FblI GTMKAC 2 cut(s) 345, 495
Fnu4HI GCNGC 6 cut(s) 91, 113, 215, 259, 262, 387
FokI GGATG 3 cut(s) 33, 81, 105
FriOI GRGCYC 2 cut(s) 296, 519
Fsp4HI GCNGC 6 cut(s) 91, 113, 215, 259, 262, 387
FspBI CTAG 2 cut(s) 123, 269
FspI TGCGCA 1 cut(s) 213
GlaI GCGC 2 cut(s) 213, 283
GluI GCNGC 6 cut(s) 91, 113, 215, 259, 262, 387
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 7 cut(s) 53, 90, 195, 206, 410, 418, 442
HapII CCGG 7 cut(s) 22, 50, 181, 202, 309, 407, 449
HgaI GACGC 1 cut(s) 340
HhaI GCGC 2 cut(s) 214, 284
Hin1I GRCGYC 2 cut(s) 282, 351
Hin1II CATG 5 cut(s) 59, 68, 189, 328, 404
Hin6I GCGC 2 cut(s) 212, 282
HinP1I GCGC 2 cut(s) 212, 282
HincII GTYRAC 3 cut(s) 62, 435, 496
HindII GTYRAC 3 cut(s) 62, 435, 496
HinfI GANTC 4 cut(s) 421, 436, 461, 497
HpaII CCGG 7 cut(s) 22, 50, 181, 202, 309, 407, 449
HphI GGTGA 4 cut(s) 8, 146, 238, 492
Hpy166II GTNNAC 4 cut(s) 62, 346, 435, 496
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 3 cut(s) 325, 355, 425
Hpy8I GTNNAC 4 cut(s) 62, 346, 435, 496
Hpy99I CGWCG 2 cut(s) 356, 416
HpyAV CCTTC 5 cut(s) 5, 87, 176, 182, 447
HpyCH4V TGCA 3 cut(s) 39, 68, 276
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 454, 514
Hsp92I GRCGYC 2 cut(s) 282, 351
Hsp92II CATG 5 cut(s) 59, 68, 189, 328, 404
HspAI GCGC 2 cut(s) 212, 282
KasI GGCGCC 1 cut(s) 281
KspI CCGCGG 1 cut(s) 259
Kzo9I GATC 1 cut(s) 541
LmnI GCTCC 2 cut(s) 222, 487
LpnPI CCDG 9 cut(s) 35, 63, 119, 194, 215, 322, 408, 420, 462
Lsp1109I GCAGC 4 cut(s) 124, 226, 273, 373
LweI GCATC 2 cut(s) 199, 277
MaeI CTAG 2 cut(s) 123, 269
MaeIII GTNAC 1 cut(s) 14
MalI GATC 1 cut(s) 543
MboI GATC 1 cut(s) 541
MflI RGATCY 1 cut(s) 541
MhlI GDGCHC 2 cut(s) 296, 519
Mly113I GGCGCC 1 cut(s) 282
MlyI GAGTC 2 cut(s) 430, 491
MmeI TCCRAC 3 cut(s) 122, 200, 250
MnlI CCTC 6 cut(s) 153, 162, 254, 328, 476, 543
MroXI GAANNNNTTC 2 cut(s) 378, 477
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 7 cut(s) 22, 50, 181, 202, 309, 407, 449
MspR9I CCNGG 4 cut(s) 181, 203, 309, 450
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 3 cut(s) 147, 454, 514
NarI GGCGCC 1 cut(s) 282
NciI CCSGG 4 cut(s) 181, 203, 309, 450
NcoI CCATGG 1 cut(s) 55
NdeII GATC 1 cut(s) 541
NlaIII CATG 5 cut(s) 59, 68, 189, 328, 404
NlaIV GGNNCC 1 cut(s) 283
NmeAIII GCCGAG 1 cut(s) 418
NmuCI GTSAC 1 cut(s) 14
NsbI TGCGCA 1 cut(s) 213
NspI RCATGY 1 cut(s) 68
PagI TCATGA 1 cut(s) 324
PdmI GAANNNNTTC 2 cut(s) 378, 477
PfeI GAWTC 2 cut(s) 421, 461
PflFI GACNNNGTC 1 cut(s) 187
PkrI GCNGC 6 cut(s) 92, 114, 216, 260, 263, 388
PleI GAGTC 2 cut(s) 430, 491
PluTI GGCGCC 1 cut(s) 285
PpsI GAGTC 2 cut(s) 430, 491
PshAI GACNNNNGTC 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 519
PspEI GGTNACC 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 283
PspPI GGNCC 4 cut(s) 52, 193, 204, 416
PsuI RGATCY 1 cut(s) 541
PsyI GACNNNGTC 1 cut(s) 187
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
SacI GAGCTC 1 cut(s) 519
SacII CCGCGG 1 cut(s) 259
SalI GTCGAC 1 cut(s) 494
SatI GCNGC 6 cut(s) 91, 113, 215, 259, 262, 387
Sau3AI GATC 1 cut(s) 541
Sau96I GGNCC 4 cut(s) 52, 193, 204, 416
SchI GAGTC 2 cut(s) 430, 491
ScrFI CCNGG 4 cut(s) 181, 203, 309, 450
SduI GDGCHC 2 cut(s) 296, 519
SetI ASST 6 cut(s) 16, 219, 270, 492, 510, 519
SfaNI GCATC 2 cut(s) 199, 277
SfoI GGCGCC 1 cut(s) 283
Sfr303I CCGCGG 1 cut(s) 259
SgrBI CCGCGG 1 cut(s) 259
SsiI CCGC 7 cut(s) 91, 110, 148, 241, 256, 258, 547
SspDI GGCGCC 1 cut(s) 281
SspMI CTAG 2 cut(s) 123, 269
SstI GAGCTC 1 cut(s) 519
StyD4I CCNGG 4 cut(s) 179, 201, 307, 448
StyI CCWWGG 1 cut(s) 55
TaqI TCGA 6 cut(s) 354, 391, 459, 481, 495, 519
TauI GCSGC 2 cut(s) 93, 261
TfiI GAWTC 2 cut(s) 421, 461
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 4 cut(s) 112, 214, 261, 386
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 417
Tth111I GACNNNGTC 1 cut(s) 187
XceI RCATGY 1 cut(s) 68
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
XmiI GTMKAC 2 cut(s) 345, 495
XmnI GAANNNNTTC 2 cut(s) 378, 477
XspI CTAG 2 cut(s) 123, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.