Rmu_sc0000157.1_g000040

Osmotin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000157.1
OG0020027
Physical Location & Seq
Reverse (-)
188418 .. 191572
3155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000157.1_g000040.1.cds

Sequence Viewer

Length: 573 bp
atgcctagtgtggaggcaacttggcaaggccggaaaggtggcttcctggagacggatttgcgacttccggataccagagagagaaaccggagccccgtcactggtcgtcacactccgatcaccggccgcaggaatcctgtcaccaactgtcggattcctgctaaccttcaccggattccggtcatcgacctccggaatccggcccgtgccggcagctcccactctaacaaccacttctcctgcttcaccggcgactatggctgcaagttagagtgcaacggagcacgcgcagcccctgcaactcttgcccggttcaacctccaccacggccccaacgataatggtgtacggcttcagaaagatagagaagttgaagaagctctggctgctcgacgcgtccataaccggctgacgggatcgattcccgatgagttgactcggctagagttggaaggcctgaatctttatgagaataacttcaaggggagcttgctgatgagcattgccgactcgctgaagcagtacgagctcgatgagagagagagagagatctgccagaatggcacgatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

190

Amino Acids

21.37

Weight (kDa)

8.69

Isoelectric Point (pI)

35.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020027)

Species Orthologous Gene IDs
rosa_laevigata RLG00000016946
rosa_multiflora Rmu_sc0000157.1_g000040 Rmu_sc0002819.1_g000008 Rmu_sc0004199.1_g000024 Rmu_sc0035221.1_g000001
rosa_roxburghii Rroxscaffold_2G00140740
rosa_samantha Rh5CG217800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 288, 396
AccIII TCCGGA 2 cut(s) 67, 192
AciI CCGC 1 cut(s) 127
AclWI GGATC 1 cut(s) 424
AcoI YGGCCR 1 cut(s) 124
AcuI CTGAAG 2 cut(s) 338, 536
AfaI GTAC 2 cut(s) 348, 524
AfiI CCNNNNNNNGG 8 cut(s) 52, 101, 122, 129, 150, 178, 199, 412
AflIII ACRYGT 1 cut(s) 394
AgsI TTSAA 3 cut(s) 316, 374, 481
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 4 cut(s) 216, 380, 489, 529
AluI AGCT 4 cut(s) 216, 380, 489, 529
Alw21I GWGCWC 2 cut(s) 286, 531
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 1 cut(s) 424
AlwNI CAGNNNCTG 1 cut(s) 296
Aor13HI TCCGGA 2 cut(s) 67, 192
AoxI GGCC 5 cut(s) 28, 124, 201, 328, 454
ApeKI GCWGC 4 cut(s) 213, 261, 290, 386
Asp700I GAANNNNTTC 1 cut(s) 476
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 2 cut(s) 202, 329
AsuC2I CCSGG 1 cut(s) 310
AsuHPI GGTGA 4 cut(s) 112, 133, 161, 238
BanII GRGCYC 2 cut(s) 95, 531
Bbv12I GWGCWC 2 cut(s) 286, 531
BbvI GCAGC 4 cut(s) 225, 248, 302, 373
BceAI ACGGC 2 cut(s) 343, 365
BciT130I CCWGG 1 cut(s) 47
BciVI GTATCC 1 cut(s) 64
BcnI CCSGG 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 2 cut(s) 6, 443
BfuI GTATCC 1 cut(s) 64
BglI GCCNNNNNGGC 1 cut(s) 561
BglII AGATCT 1 cut(s) 549
BisI GCNGC 5 cut(s) 127, 214, 262, 291, 387
BlsI GCNGC 5 cut(s) 128, 215, 263, 292, 388
Bme1390I CCNGG 2 cut(s) 47, 310
BmgT120I GGNCC 2 cut(s) 202, 329
BmiI GGNNCC 2 cut(s) 92, 331
BmrFI CCNGG 2 cut(s) 47, 310
BpmI CTGGAG 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 310
Bsa29I ATCGAT 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 325
BsaWI WCCGGW 5 cut(s) 67, 87, 171, 178, 192
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 8 cut(s) 52, 101, 122, 129, 150, 178, 199, 412
Bse118I RCCGGY 4 cut(s) 122, 209, 248, 405
Bse1I ACTGG 1 cut(s) 106
Bse3DI GCAATG 1 cut(s) 501
BseAI TCCGGA 2 cut(s) 67, 192
BseBI CCWGG 1 cut(s) 47
BseCI ATCGAT 1 cut(s) 419
BseDI CCNNGG 1 cut(s) 325
BseLI CCNNNNNNNGG 8 cut(s) 52, 101, 122, 129, 150, 178, 199, 412
BseMI GCAATG 1 cut(s) 501
BseNI ACTGG 1 cut(s) 106
BseX3I CGGCCG 1 cut(s) 124
BseXI GCAGC 4 cut(s) 225, 248, 302, 373
Bsh1236I CGCG 2 cut(s) 288, 396
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 5 cut(s) 30, 126, 203, 330, 456
BshVI ATCGAT 1 cut(s) 419
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 2 cut(s) 286, 531
BslI CCNNNNNNNGG 8 cut(s) 52, 101, 122, 129, 150, 178, 199, 412
BsmAI GTCTC 1 cut(s) 44
BsmBI CGTCTC 1 cut(s) 44
BsnI GGCC 5 cut(s) 30, 126, 203, 330, 456
Bsp1286I GDGCHC 3 cut(s) 95, 286, 531
Bsp13I TCCGGA 2 cut(s) 67, 192
Bsp143I GATC 3 cut(s) 117, 416, 549
BspACI CCGC 1 cut(s) 127
BspANI GGCC 5 cut(s) 30, 126, 203, 330, 456
BspDI ATCGAT 1 cut(s) 419
BspEI TCCGGA 2 cut(s) 67, 192
BspFNI CGCG 2 cut(s) 288, 396
BspLI GGNNCC 2 cut(s) 92, 331
BspPI GGATC 1 cut(s) 424
BsrDI GCAATG 1 cut(s) 501
BsrFI RCCGGY 4 cut(s) 122, 209, 248, 405
BsrI ACTGG 1 cut(s) 106
BssAI RCCGGY 4 cut(s) 122, 209, 248, 405
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 3 cut(s) 117, 416, 549
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 149
BstAPI GCANNNNNTGC 2 cut(s) 296, 305
BstC8I GCNNGC 3 cut(s) 211, 286, 491
BstDSI CCRYGG 1 cut(s) 325
BstFNI CGCG 2 cut(s) 288, 396
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 3 cut(s) 120, 419, 552
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 3 cut(s) 117, 416, 549
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 8 cut(s) 249, 258, 290, 296, 305, 386, 526, 561
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 2 cut(s) 45, 308
BstUI CGCG 2 cut(s) 288, 396
BstV1I GCAGC 4 cut(s) 225, 248, 302, 373
BstX2I RGATCY 1 cut(s) 549
BstYI RGATCY 1 cut(s) 549
BstZI CGGCCG 1 cut(s) 124
Bsu15I ATCGAT 1 cut(s) 419
BsuI GTATCC 1 cut(s) 64
BsuRI GGCC 5 cut(s) 30, 126, 203, 330, 456
BsuTUI ATCGAT 1 cut(s) 419
BtgI CCRYGG 1 cut(s) 325
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 3 cut(s) 211, 286, 491
CaiI CAGNNNCTG 1 cut(s) 296
CfoI GCGC 1 cut(s) 290
Cfr10I RCCGGY 4 cut(s) 122, 209, 248, 405
Cfr13I GGNCC 2 cut(s) 202, 329
ClaI ATCGAT 1 cut(s) 419
CseI GACGC 2 cut(s) 385, 402
Csp6I GTAC 2 cut(s) 347, 523
CviQI GTAC 2 cut(s) 347, 523
DpnI GATC 3 cut(s) 119, 418, 551
DpnII GATC 3 cut(s) 117, 416, 549
EaeI YGGCCR 1 cut(s) 124
EagI CGGCCG 1 cut(s) 124
Ecl136II GAGCTC 1 cut(s) 529
EclXI CGGCCG 1 cut(s) 124
Eco147I AGGCCT 1 cut(s) 456
Eco24I GRGCYC 2 cut(s) 95, 531
Eco52I CGGCCG 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 529
Eco57I CTGAAG 2 cut(s) 338, 536
EcoICRI GAGCTC 1 cut(s) 529
EcoRII CCWGG 1 cut(s) 45
EcoT38I GRGCYC 2 cut(s) 95, 531
Esp3I CGTCTC 1 cut(s) 44
FaiI YATR 3 cut(s) 258, 402, 468
FalI AAGNNNNNCTT 2 cut(s) 473, 505
Fnu4HI GCNGC 5 cut(s) 127, 214, 262, 291, 387
FriOI GRGCYC 2 cut(s) 95, 531
Fsp4HI GCNGC 5 cut(s) 127, 214, 262, 291, 387
FspBI CTAG 2 cut(s) 6, 443
GlaI GCGC 1 cut(s) 289
GluI GCNGC 5 cut(s) 127, 214, 262, 291, 387
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 5 cut(s) 30, 126, 203, 330, 456
HgaI GACGC 2 cut(s) 385, 402
HhaI GCGC 1 cut(s) 290
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HincII GTYRAC 1 cut(s) 435
HindII GTYRAC 1 cut(s) 435
HinfI GANTC 8 cut(s) 133, 154, 175, 196, 421, 436, 460, 509
HphI GGTGA 4 cut(s) 112, 133, 161, 238
Hpy166II GTNNAC 2 cut(s) 347, 435
Hpy188I TCNGA 3 cut(s) 117, 153, 357
Hpy188III TCNNGA 3 cut(s) 68, 193, 425
Hpy8I GTNNAC 2 cut(s) 347, 435
Hpy99I CGWCG 1 cut(s) 396
HpyAV CCTTC 2 cut(s) 176, 446
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4V TGCA 3 cut(s) 264, 276, 299
HpyF10VI GCNNNNNNNGC 8 cut(s) 249, 258, 290, 296, 305, 386, 526, 561
HspAI GCGC 1 cut(s) 288
Kpn2I TCCGGA 2 cut(s) 67, 192
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
Kzo9I GATC 3 cut(s) 117, 416, 549
LmnI GCTCC 4 cut(s) 90, 221, 281, 486
Lsp1109I GCAGC 4 cut(s) 225, 248, 302, 373
MaeI CTAG 2 cut(s) 6, 443
MaeIII GTNAC 3 cut(s) 97, 107, 139
MalI GATC 3 cut(s) 119, 418, 551
MboI GATC 3 cut(s) 117, 416, 549
MboII GAAGA 1 cut(s) 386
MflI RGATCY 1 cut(s) 549
MhlI GDGCHC 3 cut(s) 95, 286, 531
MluI ACGCGT 1 cut(s) 394
MlyI GAGTC 2 cut(s) 430, 503
MmeI TCCRAC 2 cut(s) 131, 429
MnlI CCTC 3 cut(s) 7, 200, 329
MroI TCCGGA 2 cut(s) 67, 192
MroNI GCCGGC 1 cut(s) 209
MroXI GAANNNNTTC 1 cut(s) 476
MspR9I CCNGG 2 cut(s) 47, 310
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 2 cut(s) 288, 396
MwoI GCNNNNNNNGC 8 cut(s) 249, 258, 290, 296, 305, 386, 526, 561
NaeI GCCGGC 1 cut(s) 211
NciI CCSGG 1 cut(s) 310
NdeII GATC 3 cut(s) 117, 416, 549
NgoMIV GCCGGC 1 cut(s) 209
NlaIV GGNNCC 2 cut(s) 92, 331
NmeAIII GCCGAG 1 cut(s) 418
NmuCI GTSAC 3 cut(s) 97, 107, 139
PceI AGGCCT 1 cut(s) 456
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PdiI GCCGGC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 476
PfeI GAWTC 6 cut(s) 133, 154, 175, 196, 421, 460
PfoI TCCNGGA 1 cut(s) 45
PkrI GCNGC 5 cut(s) 128, 215, 263, 292, 388
PleI GAGTC 2 cut(s) 430, 503
PpsI GAGTC 2 cut(s) 430, 503
Psp124BI GAGCTC 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 92, 331
PspPI GGNCC 2 cut(s) 202, 329
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 1 cut(s) 549
RsaI GTAC 2 cut(s) 348, 524
RsaNI GTAC 2 cut(s) 347, 523
SacI GAGCTC 1 cut(s) 531
SatI GCNGC 5 cut(s) 127, 214, 262, 291, 387
Sau3AI GATC 3 cut(s) 117, 416, 549
Sau96I GGNCC 2 cut(s) 202, 329
SchI GAGTC 2 cut(s) 430, 503
ScrFI CCNGG 2 cut(s) 47, 310
SduI GDGCHC 3 cut(s) 95, 286, 531
SetI ASST 8 cut(s) 40, 168, 192, 218, 321, 382, 491, 531
SgrAI CRCCGGYG 1 cut(s) 248
SseBI AGGCCT 1 cut(s) 456
SsiI CCGC 1 cut(s) 127
SspMI CTAG 2 cut(s) 6, 443
SstI GAGCTC 1 cut(s) 531
StuI AGGCCT 1 cut(s) 456
StyD4I CCNGG 2 cut(s) 45, 308
TaaI ACNGT 1 cut(s) 149
TaqI TCGA 4 cut(s) 186, 391, 419, 531
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 6 cut(s) 133, 154, 175, 196, 421, 460
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 3 cut(s) 97, 107, 139
TseI GCWGC 4 cut(s) 213, 261, 290, 386
Tsp45I GTSAC 3 cut(s) 97, 107, 139
TspGWI ACGGA 2 cut(s) 68, 294
TspRI CASTG 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 476
XspI CTAG 2 cut(s) 6, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.