RLG00000017010

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017219
Physical Location & Seq
Forward (+)
12083794 .. 12085446
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017010

Sequence Viewer

Length: 1131 bp
ATGTTTCTCGCAATAGCAGGAGCATTTGTGGAGTTGTACAATTATGTTAGAGGGCCTATGGTGCCGCAAGCAACTCAATTAAGGGATGCAGTAGTGAGGATTCATGAAAGCTGGGCAGGTCAAATTGCAAAGCCAGAATCGATGATCAGTAGTATTCTCGAATTGATTAATGCGTTCCAAAACATTTATACCGGACTAGGATTGGTTTGTTTGGTGATCTCCTTTGTTCTAGGACTGCTTTGGAAAGCGTTTGTTCTGCTGATTTCTGCTTTGGGTGTATGGATTTCCTATTTGATTTTGACAGACCATGATTGGCACGGGCTGTTTCTGACAGACGAAAAAGGATTTACACTTTTTGCAAGTGCTTGGCTTGGTTTACTGCTACTCTACCAAGCACAAAGTCTGCTTGCCAAAGTTTGCCTTTTCTGTATCGAAACCATAGTAATATGGGTAATGTATTCAAGGGCGACTAATATGGAAATCTCTTGGGATCATTATAATTTCCCTGAAATCATCTCCCGATCTGTTGATCCGGTGCCCCATTATTCCTCTCCGTCAGACCTCTACCGCAGTCTCTGCGCTTCCCCCATCTTCCTTGACGAAGGCCATTTGAGTTTTGCTTATGATCGGGCGACTGGTAAAAAATGCTGGATGCTGGGAGCTAGGCTTTTACTTATTGATTTGGCAGAAATTCCAGAATACTGGAACTGGAGATCTGTACCCGAATCCAGGTTCTCCCAAGTGGCTGAGCTCATATTTGTACAAGACTTGAAGATCAAGGGATCCATAACGACAGATATGTTGTCTCCGAGAACAACTTATGTAGCTTACCTTGTATATAAGTTTCCAAATATATCTCGATCTGGTTTTCATGAAAGCCCTGTTAGCTTGCGTGTAGTGCGTGTAGTTAATACTCAACGCAGGGTTGTAGCTCAACATAATCGTGTCTTCCTGATAGGAGATATGGCTTCACAAGCTCGAAGGAGAAATGATAGATGGATGGAGATTGAGTTCGGTGAAATCTCCTATATTGAAGATAATGCTACTATAGAGTGTATTCTAGAGGGATCTGAAAGTTTTGTGAGAAAAAGAGGTCTCATTGTGGAAGGTATTGAATTTAGGCCCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

377

Amino Acids

43.03

Weight (kDa)

6.27

Isoelectric Point (pI)

57.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 214 - 375 7.9e-39 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017219)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12730
rosa_chinensis RchiOBHm_Chr2g0100791
rosa_laevigata RLG00000017010
rosa_multiflora Rmu_sc0001187.1_g000001 Rmu_sc0001659.1_g000017
rosa_roxburghii Rroxscaffold_2G00141860
rosa_rugosa Rorug02G0092700 Rorug02G0092700 Rorug02G0092800
rosa_samantha Rh2AG140500 Rh2BG145400 Rh2CG146300 Rh2DG145800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 498
Acc36I ACCTGC 1 cut(s) 107
AccB1I GGYRCC 2 cut(s) 61, 535
AciI CCGC 2 cut(s) 65, 568
AclWI GGATC 5 cut(s) 498, 524, 777, 790, 1075
AcsI RAATTY 2 cut(s) 690, 1115
AfaI GTAC 3 cut(s) 38, 720, 762
AfiI CCNNNNNNNGG 1 cut(s) 729
AgsI TTSAA 4 cut(s) 462, 772, 1034, 1115
AjnI CCWGG 1 cut(s) 728
AloI GAACNNNNNNTCC 2 cut(s) 995, 1027
AluBI AGCT 7 cut(s) 111, 662, 751, 827, 888, 932, 977
AluI AGCT 7 cut(s) 111, 662, 751, 827, 888, 932, 977
Alw21I GWGCWC 1 cut(s) 753
Alw26I GTCTC 3 cut(s) 578, 810, 1100
AlwI GGATC 5 cut(s) 498, 524, 777, 790, 1075
AlwNI CAGNNNCTG 1 cut(s) 576
AoxI GGCC 3 cut(s) 53, 604, 1121
ApoI RAATTY 2 cut(s) 690, 1115
AseI ATTAAT 1 cut(s) 168
AspLEI GCGC 1 cut(s) 581
AspS9I GGNCC 2 cut(s) 53, 1122
AsuHPI GGTGA 2 cut(s) 226, 1028
BaeGI GKGCMC 1 cut(s) 540
BamHI GGATCC 1 cut(s) 782
BanI GGYRCC 2 cut(s) 61, 535
BanII GRGCYC 1 cut(s) 753
BbsI GAAGAC 1 cut(s) 940
Bbv12I GWGCWC 1 cut(s) 753
BccI CCATC 3 cut(s) 596, 990, 994
BciT130I CCWGG 1 cut(s) 730
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 3 cut(s) 578, 810, 1100
BfaI CTAG 4 cut(s) 197, 230, 663, 1061
BfmI CTRYAG 1 cut(s) 1047
BfuAI ACCTGC 1 cut(s) 107
BglII AGATCT 1 cut(s) 713
BisI GCNGC 1 cut(s) 65
BlpI GCTNAGC 1 cut(s) 747
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 730
BmgT120I GGNCC 2 cut(s) 53, 1122
BmiI GGNNCC 3 cut(s) 63, 537, 784
BmrFI CCNGG 1 cut(s) 730
BmsI GCATC 2 cut(s) 76, 642
BpiI GAAGAC 1 cut(s) 940
BpmI CTGGAG 1 cut(s) 730
Bpu1102I GCTNAGC 1 cut(s) 747
Bsa29I ATCGAT 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 1100
BsaWI WCCGGW 2 cut(s) 191, 532
BsaXI ACNNNNNCTCC 4 cut(s) 12, 42, 995, 1025
Bsc4I CCNNNNNNNGG 1 cut(s) 729
Bse1I ACTGG 3 cut(s) 640, 707, 713
BseBI CCWGG 1 cut(s) 730
BseCI ATCGAT 1 cut(s) 140
BseGI GGATG 3 cut(s) 91, 657, 1005
BseLI CCNNNNNNNGG 1 cut(s) 729
BseMII CTCAG 1 cut(s) 738
BseNI ACTGG 3 cut(s) 640, 707, 713
BseSI GKGCMC 1 cut(s) 540
BseYI CCCAGC 2 cut(s) 111, 655
BshFI GGCC 3 cut(s) 55, 606, 1123
BshNI GGYRCC 2 cut(s) 61, 535
BshVI ATCGAT 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 753
BsiSI CCGG 2 cut(s) 192, 533
BslI CCNNNNNNNGG 1 cut(s) 729
BsmAI GTCTC 3 cut(s) 578, 810, 1100
BsnI GGCC 3 cut(s) 55, 606, 1123
Bso31I GGTCTC 1 cut(s) 1100
Bsp1286I GDGCHC 2 cut(s) 540, 753
Bsp1407I TGTACA 2 cut(s) 36, 760
Bsp1720I GCTNAGC 1 cut(s) 747
BspACI CCGC 2 cut(s) 65, 568
BspANI GGCC 3 cut(s) 55, 606, 1123
BspCNI CTCAG 1 cut(s) 739
BspDI ATCGAT 1 cut(s) 140
BspHI TCATGA 2 cut(s) 103, 871
BspLI GGNNCC 3 cut(s) 63, 537, 784
BspMI ACCTGC 1 cut(s) 107
BspPI GGATC 5 cut(s) 498, 524, 777, 790, 1075
BspT107I GGYRCC 2 cut(s) 61, 535
BspTNI GGTCTC 1 cut(s) 1100
BsrGI TGTACA 2 cut(s) 36, 760
BsrI ACTGG 3 cut(s) 640, 707, 713
Bst2UI CCWGG 1 cut(s) 730
BstAPI GCANNNNNTGC 1 cut(s) 576
BstAUI TGTACA 2 cut(s) 36, 760
BstC8I GCNNGC 3 cut(s) 69, 408, 890
BstDEI CTNAG 1 cut(s) 747
BstF5I GGATG 3 cut(s) 91, 657, 1005
BstHHI GCGC 1 cut(s) 581
BstMAI GTCTC 3 cut(s) 578, 810, 1100
BstMWI GCNNNNNNNGC 5 cut(s) 61, 576, 885, 898, 974
BstNI CCWGG 1 cut(s) 730
BstSCI CCNGG 1 cut(s) 728
BstSFI CTRYAG 1 cut(s) 1047
BstSLI GKGCMC 1 cut(s) 540
BstV2I GAAGAC 1 cut(s) 940
BstX2I RGATCY 3 cut(s) 713, 782, 1067
BstXI CCANNNNNNTGG 1 cut(s) 702
BstYI RGATCY 3 cut(s) 713, 782, 1067
Bsu15I ATCGAT 1 cut(s) 140
BsuRI GGCC 3 cut(s) 55, 606, 1123
BsuTUI ATCGAT 1 cut(s) 140
BtsCI GGATG 3 cut(s) 91, 657, 1005
BveI ACCTGC 1 cut(s) 107
Cac8I GCNNGC 3 cut(s) 69, 408, 890
CaiI CAGNNNCTG 1 cut(s) 576
CciI TCATGA 2 cut(s) 103, 871
CfoI GCGC 1 cut(s) 581
Cfr13I GGNCC 2 cut(s) 53, 1122
ClaI ATCGAT 1 cut(s) 140
Csp6I GTAC 3 cut(s) 37, 719, 761
CviAII CATG 3 cut(s) 104, 308, 872
CviQI GTAC 3 cut(s) 37, 719, 761
DdeI CTNAG 1 cut(s) 747
Ecl136II GAGCTC 1 cut(s) 751
Eco24I GRGCYC 1 cut(s) 753
Eco31I GGTCTC 1 cut(s) 1100
Eco53kI GAGCTC 1 cut(s) 751
EcoICRI GAGCTC 1 cut(s) 751
EcoO109I RGGNCCY 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 728
EcoT38I GRGCYC 1 cut(s) 753
FaeI CATG 3 cut(s) 107, 311, 875
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FatI CATG 3 cut(s) 103, 307, 871
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 3 cut(s) 98, 664, 1012
FriOI GRGCYC 1 cut(s) 753
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 4 cut(s) 197, 230, 663, 1061
GlaI GCGC 1 cut(s) 580
GluI GCNGC 1 cut(s) 65
GsaI CCCAGC 2 cut(s) 115, 659
GsuI CTGGAG 1 cut(s) 730
HaeIII GGCC 3 cut(s) 55, 606, 1123
HapII CCGG 2 cut(s) 192, 533
HhaI GCGC 1 cut(s) 581
Hin1II CATG 3 cut(s) 107, 311, 875
Hin6I GCGC 1 cut(s) 579
HinP1I GCGC 1 cut(s) 579
HinfI GANTC 3 cut(s) 100, 137, 725
HpaII CCGG 2 cut(s) 192, 533
HphI GGTGA 2 cut(s) 226, 1028
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 4 cut(s) 330, 559, 810, 1072
Hpy188III TCNNGA 8 cut(s) 104, 158, 519, 695, 858, 872, 952, 1061
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 3 cut(s) 596, 975, 1100
HpyCH4V TGCA 3 cut(s) 89, 128, 359
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 576, 885, 898, 974
HpyF3I CTNAG 1 cut(s) 747
Hsp92II CATG 3 cut(s) 107, 311, 875
HspAI GCGC 1 cut(s) 579
Ksp22I TGATCA 1 cut(s) 144
LmnI GCTCC 2 cut(s) 20, 659
LweI GCATC 2 cut(s) 76, 642
MaeI CTAG 4 cut(s) 197, 230, 663, 1061
MboII GAAGA 4 cut(s) 583, 784, 940, 1046
MflI RGATCY 3 cut(s) 713, 782, 1067
MhlI GDGCHC 2 cut(s) 540, 753
MluCI AATT 7 cut(s) 40, 77, 123, 161, 499, 690, 1115
MnlI CCTC 6 cut(s) 44, 90, 559, 572, 1057, 1085
MseI TTAA 3 cut(s) 80, 168, 909
MslI CAYNNNNRTG 1 cut(s) 942
MspI CCGG 2 cut(s) 192, 533
MspR9I CCNGG 1 cut(s) 730
MvaI CCWGG 1 cut(s) 730
MwoI GCNNNNNNNGC 5 cut(s) 61, 576, 885, 898, 974
NlaIII CATG 3 cut(s) 107, 311, 875
NlaIV GGNNCC 3 cut(s) 63, 537, 784
PagI TCATGA 2 cut(s) 103, 871
PfeI GAWTC 3 cut(s) 100, 137, 725
PkrI GCNGC 1 cut(s) 66
PshBI ATTAAT 1 cut(s) 168
PsiI TTATAA 1 cut(s) 498
Psp124BI GAGCTC 1 cut(s) 753
Psp6I CCWGG 1 cut(s) 728
PspFI CCCAGC 2 cut(s) 111, 655
PspGI CCWGG 1 cut(s) 728
PspN4I GGNNCC 3 cut(s) 63, 537, 784
PspPI GGNCC 2 cut(s) 53, 1122
PstNI CAGNNNCTG 1 cut(s) 576
PsuI RGATCY 3 cut(s) 713, 782, 1067
RsaI GTAC 3 cut(s) 38, 720, 762
RsaNI GTAC 3 cut(s) 37, 719, 761
RseI CAYNNNNRTG 1 cut(s) 942
SacI GAGCTC 1 cut(s) 753
SaqAI TTAA 3 cut(s) 80, 168, 909
SatI GCNGC 1 cut(s) 65
Sau96I GGNCC 2 cut(s) 53, 1122
ScrFI CCNGG 1 cut(s) 730
SduI GDGCHC 2 cut(s) 540, 753
SfaNI GCATC 2 cut(s) 76, 642
SfcI CTRYAG 1 cut(s) 1047
SmiMI CAYNNNNRTG 1 cut(s) 942
Sse9I AATT 7 cut(s) 40, 77, 123, 161, 499, 690, 1115
SsiI CCGC 2 cut(s) 65, 568
SspMI CTAG 4 cut(s) 197, 230, 663, 1061
SstI GAGCTC 1 cut(s) 753
StyD4I CCNGG 1 cut(s) 728
TaqI TCGA 5 cut(s) 140, 159, 432, 859, 979
TasI AATT 7 cut(s) 40, 77, 123, 161, 499, 690, 1115
TatI WGTACW 2 cut(s) 36, 760
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 3 cut(s) 100, 137, 725
Tru1I TTAA 3 cut(s) 80, 168, 909
Tru9I TTAA 3 cut(s) 80, 168, 909
TspDTI ATGAA 4 cut(s) 92, 120, 860, 888
TspGWI ACGGA 1 cut(s) 543
VspI ATTAAT 1 cut(s) 168
XapI RAATTY 2 cut(s) 690, 1115
XbaI TCTAGA 1 cut(s) 1060
XspI CTAG 4 cut(s) 197, 230, 663, 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.