Rmu_sc0001659.1_g000017

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001659.1
OG0017219
Physical Location & Seq
Forward (+)
68323 .. 70019
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001659.1_g000017.1.cds

Sequence Viewer

Length: 1131 bp
atgtttctcgcaatagcaggagcatttgtggagttgtacaattatgttagagggcctatggtgccgcaagtaactcaattaagggatgcagtagtgaggattcatgaaagctgggcaggtcaaattgcagagccagaattgatgatcagtagtattctcgaattgcttaatacgttccaaaacatttataccggactaggattggtttgtttggtgatctcctttgttctaggattgctttggagagcgtttgttctggtgatttctgctttgggtgtatggatttcctatttgattttgacagaccatgattggcacgggctatttctgacagacgaaaaaggctttacactttttgcaagtgcttggcttggtttactgctactctaccaagcacaaagtctgcttgccaaagtttgcctttgcggtatagaaaccctagtaatatgggtaatgtattcgatgacgactaataaggaaatcccttgggatcattctagtttccctgaaatcatctcccgatctattgatccggtgccccattattcctctccgtcagacctctaccgcagtctctgcgtttcccccatcttccttgacgaaggccatttgagctttgcgtatgatcgggtgactggtaaaaaatgctggatgctgggagccaggcttttacttattgatttggcagaaattccagaatactggaactggagttctgtacccgaatccaggttctcccaagtggctgagctcagatttgtatatagtcttaagatcaagggatccatagcgacatatatgttgtccccgagaacaacttatgtagcttaccttgtatataagtttccaaatatatctcgatctggttttcatgaaagccctgttagcttgcgtgtagtgcgtgtagttaatattcaacgcagagttgtagctcaacataatcgtgtcttcctgataggagatatggcttcacaagctcgaaggagaaatgatggatggatggagattgagttcggtgaaatctcctatattgaagataatgctactatagagtgtattctagagggatctgaaagttttgtgagaaaaagaggtctcattgtggaaggtattgagtttaggcctagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

376

Amino Acids

42.93

Weight (kDa)

6.1

Isoelectric Point (pI)

58.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017219)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12730
rosa_chinensis RchiOBHm_Chr2g0100791
rosa_laevigata RLG00000017010
rosa_multiflora Rmu_sc0001187.1_g000001 Rmu_sc0001659.1_g000017
rosa_roxburghii Rroxscaffold_2G00141860
rosa_rugosa Rorug02G0092700 Rorug02G0092700 Rorug02G0092800
rosa_samantha Rh2AG140500 Rh2BG145400 Rh2CG146300 Rh2DG145800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 107
AccB1I GGYRCC 2 cut(s) 61, 535
AciI CCGC 3 cut(s) 65, 426, 568
AclWI GGATC 5 cut(s) 498, 524, 777, 790, 1075
AcsI RAATTY 1 cut(s) 690
AfaI GTAC 2 cut(s) 38, 720
AfiI CCNNNNNNNGG 1 cut(s) 729
AflII CTTAAG 1 cut(s) 770
AgsI TTSAA 2 cut(s) 917, 1034
AjnI CCWGG 2 cut(s) 662, 728
AloI GAACNNNNNNTCC 4 cut(s) 697, 729, 995, 1027
AluBI AGCT 7 cut(s) 111, 615, 751, 827, 888, 932, 977
AluI AGCT 7 cut(s) 111, 615, 751, 827, 888, 932, 977
Alw21I GWGCWC 1 cut(s) 753
Alw26I GTCTC 2 cut(s) 578, 1100
AlwI GGATC 5 cut(s) 498, 524, 777, 790, 1075
AlwNI CAGNNNCTG 1 cut(s) 576
Ama87I CYCGRG 1 cut(s) 808
AoxI GGCC 3 cut(s) 53, 604, 1121
ApoI RAATTY 1 cut(s) 690
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 4 cut(s) 226, 271, 643, 1028
AvaI CYCGRG 1 cut(s) 808
BaeGI GKGCMC 1 cut(s) 540
BamHI GGATCC 1 cut(s) 782
BanI GGYRCC 2 cut(s) 61, 535
BanII GRGCYC 1 cut(s) 753
BbsI GAAGAC 1 cut(s) 940
Bbv12I GWGCWC 1 cut(s) 753
BccI CCATC 4 cut(s) 596, 986, 990, 994
BciT130I CCWGG 2 cut(s) 664, 730
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 2 cut(s) 578, 1100
BfaI CTAG 6 cut(s) 197, 230, 440, 498, 1061, 1125
BfmI CTRYAG 1 cut(s) 1047
BfrI CTTAAG 1 cut(s) 770
BfuAI ACCTGC 1 cut(s) 107
BisI GCNGC 1 cut(s) 65
BlpI GCTNAGC 1 cut(s) 747
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 2 cut(s) 664, 730
BmeT110I CYCGRG 1 cut(s) 808
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 4 cut(s) 63, 537, 661, 784
BmrFI CCNGG 2 cut(s) 664, 730
BmsI GCATC 2 cut(s) 76, 642
BpiI GAAGAC 1 cut(s) 940
BpmI CTGGAG 1 cut(s) 730
Bpu1102I GCTNAGC 1 cut(s) 747
BsaI GGTCTC 1 cut(s) 1100
BsaJI CCNNGG 1 cut(s) 485
BsaWI WCCGGW 2 cut(s) 191, 532
BsaXI ACNNNNNCTCC 4 cut(s) 12, 42, 995, 1025
Bsc4I CCNNNNNNNGG 1 cut(s) 729
Bse1I ACTGG 3 cut(s) 640, 707, 713
BseBI CCWGG 2 cut(s) 664, 730
BseDI CCNNGG 1 cut(s) 485
BseGI GGATG 4 cut(s) 91, 657, 1001, 1005
BseLI CCNNNNNNNGG 1 cut(s) 729
BseMII CTCAG 2 cut(s) 738, 766
BseNI ACTGG 3 cut(s) 640, 707, 713
BseSI GKGCMC 1 cut(s) 540
BseYI CCCAGC 2 cut(s) 111, 655
BshFI GGCC 3 cut(s) 55, 606, 1123
BshNI GGYRCC 2 cut(s) 61, 535
BsiHKAI GWGCWC 1 cut(s) 753
BsiHKCI CYCGRG 1 cut(s) 808
BsiSI CCGG 2 cut(s) 192, 533
BslFI GGGAC 1 cut(s) 790
BslI CCNNNNNNNGG 1 cut(s) 729
BsmAI GTCTC 2 cut(s) 578, 1100
BsmFI GGGAC 1 cut(s) 790
BsnI GGCC 3 cut(s) 55, 606, 1123
Bso31I GGTCTC 1 cut(s) 1100
BsoBI CYCGRG 1 cut(s) 808
Bsp1286I GDGCHC 2 cut(s) 540, 753
Bsp1407I TGTACA 1 cut(s) 36
Bsp1720I GCTNAGC 1 cut(s) 747
BspACI CCGC 3 cut(s) 65, 426, 568
BspANI GGCC 3 cut(s) 55, 606, 1123
BspCNI CTCAG 2 cut(s) 739, 765
BspHI TCATGA 2 cut(s) 103, 871
BspLI GGNNCC 4 cut(s) 63, 537, 661, 784
BspMI ACCTGC 1 cut(s) 107
BspPI GGATC 5 cut(s) 498, 524, 777, 790, 1075
BspT107I GGYRCC 2 cut(s) 61, 535
BspTI CTTAAG 1 cut(s) 770
BspTNI GGTCTC 1 cut(s) 1100
BsrGI TGTACA 1 cut(s) 36
BsrI ACTGG 3 cut(s) 640, 707, 713
BssECI CCNNGG 1 cut(s) 485
BssT1I CCWWGG 1 cut(s) 485
Bst2UI CCWGG 2 cut(s) 664, 730
BstAFI CTTAAG 1 cut(s) 770
BstAPI GCANNNNNTGC 1 cut(s) 576
BstAUI TGTACA 1 cut(s) 36
BstC8I GCNNGC 2 cut(s) 408, 890
BstDEI CTNAG 2 cut(s) 747, 752
BstF5I GGATG 4 cut(s) 91, 657, 1001, 1005
BstMAI GTCTC 2 cut(s) 578, 1100
BstMWI GCNNNNNNNGC 6 cut(s) 61, 576, 612, 885, 898, 974
BstNI CCWGG 2 cut(s) 664, 730
BstSCI CCNGG 2 cut(s) 662, 728
BstSFI CTRYAG 1 cut(s) 1047
BstSLI GKGCMC 1 cut(s) 540
BstV2I GAAGAC 1 cut(s) 940
BstX2I RGATCY 2 cut(s) 782, 1067
BstXI CCANNNNNNTGG 1 cut(s) 702
BstYI RGATCY 2 cut(s) 782, 1067
BsuRI GGCC 3 cut(s) 55, 606, 1123
BtsCI GGATG 4 cut(s) 91, 657, 1001, 1005
BveI ACCTGC 1 cut(s) 107
Cac8I GCNNGC 2 cut(s) 408, 890
CaiI CAGNNNCTG 1 cut(s) 576
CciI TCATGA 2 cut(s) 103, 871
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 37, 719
CviAII CATG 3 cut(s) 104, 308, 872
CviQI GTAC 2 cut(s) 37, 719
DdeI CTNAG 2 cut(s) 747, 752
Ecl136II GAGCTC 1 cut(s) 751
Eco130I CCWWGG 1 cut(s) 485
Eco147I AGGCCT 1 cut(s) 1123
Eco24I GRGCYC 1 cut(s) 753
Eco31I GGTCTC 1 cut(s) 1100
Eco53kI GAGCTC 1 cut(s) 751
Eco88I CYCGRG 1 cut(s) 808
EcoICRI GAGCTC 1 cut(s) 751
EcoO109I RGGNCCY 1 cut(s) 53
EcoRII CCWGG 2 cut(s) 662, 728
EcoT14I CCWWGG 1 cut(s) 485
EcoT38I GRGCYC 1 cut(s) 753
ErhI CCWWGG 1 cut(s) 485
FaeI CATG 3 cut(s) 107, 311, 875
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FaqI GGGAC 1 cut(s) 790
FatI CATG 3 cut(s) 103, 307, 871
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 4 cut(s) 98, 664, 1008, 1012
FriOI GRGCYC 1 cut(s) 753
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 6 cut(s) 197, 230, 440, 498, 1061, 1125
GluI GCNGC 1 cut(s) 65
GsaI CCCAGC 2 cut(s) 115, 659
GsuI CTGGAG 1 cut(s) 730
HaeIII GGCC 3 cut(s) 55, 606, 1123
HapII CCGG 2 cut(s) 192, 533
Hin1II CATG 3 cut(s) 107, 311, 875
HinfI GANTC 2 cut(s) 100, 725
HpaII CCGG 2 cut(s) 192, 533
HphI GGTGA 4 cut(s) 226, 271, 643, 1028
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 4 cut(s) 330, 559, 755, 1072
Hpy188III TCNNGA 8 cut(s) 104, 158, 519, 695, 858, 872, 952, 1061
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 3 cut(s) 596, 975, 1100
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 3 cut(s) 89, 128, 359
HpyF10VI GCNNNNNNNGC 6 cut(s) 61, 576, 612, 885, 898, 974
HpyF3I CTNAG 2 cut(s) 747, 752
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 3 cut(s) 107, 311, 875
Ksp22I TGATCA 1 cut(s) 144
LmnI GCTCC 2 cut(s) 20, 659
LweI GCATC 2 cut(s) 76, 642
MaeI CTAG 6 cut(s) 197, 230, 440, 498, 1061, 1125
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 2 cut(s) 70, 631
MboII GAAGA 3 cut(s) 583, 940, 1046
MflI RGATCY 2 cut(s) 782, 1067
MhlI GDGCHC 2 cut(s) 540, 753
MluCI AATT 6 cut(s) 40, 77, 123, 137, 161, 690
MnlI CCTC 6 cut(s) 44, 90, 559, 572, 1057, 1085
MseI TTAA 4 cut(s) 80, 168, 771, 909
MslI CAYNNNNRTG 1 cut(s) 942
MspCI CTTAAG 1 cut(s) 770
MspI CCGG 2 cut(s) 192, 533
MspR9I CCNGG 2 cut(s) 664, 730
MvaI CCWGG 2 cut(s) 664, 730
MwoI GCNNNNNNNGC 6 cut(s) 61, 576, 612, 885, 898, 974
NlaIII CATG 3 cut(s) 107, 311, 875
NlaIV GGNNCC 4 cut(s) 63, 537, 661, 784
NmuCI GTSAC 1 cut(s) 631
PagI TCATGA 2 cut(s) 103, 871
PceI AGGCCT 1 cut(s) 1123
PfeI GAWTC 2 cut(s) 100, 725
PkrI GCNGC 1 cut(s) 66
Psp124BI GAGCTC 1 cut(s) 753
Psp6I CCWGG 2 cut(s) 662, 728
PspFI CCCAGC 2 cut(s) 111, 655
PspGI CCWGG 2 cut(s) 662, 728
PspN4I GGNNCC 4 cut(s) 63, 537, 661, 784
PspPI GGNCC 1 cut(s) 53
PstNI CAGNNNCTG 1 cut(s) 576
PsuI RGATCY 2 cut(s) 782, 1067
RsaI GTAC 2 cut(s) 38, 720
RsaNI GTAC 2 cut(s) 37, 719
RseI CAYNNNNRTG 1 cut(s) 942
SacI GAGCTC 1 cut(s) 753
SaqAI TTAA 4 cut(s) 80, 168, 771, 909
SatI GCNGC 1 cut(s) 65
Sau96I GGNCC 1 cut(s) 53
ScrFI CCNGG 2 cut(s) 664, 730
SduI GDGCHC 2 cut(s) 540, 753
SfaNI GCATC 2 cut(s) 76, 642
SfcI CTRYAG 1 cut(s) 1047
SmiMI CAYNNNNRTG 1 cut(s) 942
SmlI CTYRAG 1 cut(s) 770
SmoI CTYRAG 1 cut(s) 770
Sse9I AATT 6 cut(s) 40, 77, 123, 137, 161, 690
SseBI AGGCCT 1 cut(s) 1123
SsiI CCGC 3 cut(s) 65, 426, 568
SspI AATATT 1 cut(s) 913
SspMI CTAG 6 cut(s) 197, 230, 440, 498, 1061, 1125
SstI GAGCTC 1 cut(s) 753
StuI AGGCCT 1 cut(s) 1123
StyD4I CCNGG 2 cut(s) 662, 728
StyI CCWWGG 1 cut(s) 485
TaiI ACGT 1 cut(s) 176
TaqI TCGA 4 cut(s) 159, 461, 859, 979
TasI AATT 6 cut(s) 40, 77, 123, 137, 161, 690
TatI WGTACW 1 cut(s) 36
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 2 cut(s) 100, 725
Tru1I TTAA 4 cut(s) 80, 168, 771, 909
Tru9I TTAA 4 cut(s) 80, 168, 771, 909
TseFI GTSAC 1 cut(s) 631
Tsp45I GTSAC 1 cut(s) 631
TspDTI ATGAA 4 cut(s) 92, 120, 860, 888
TspGWI ACGGA 1 cut(s) 543
Vha464I CTTAAG 1 cut(s) 770
XapI RAATTY 1 cut(s) 690
XbaI TCTAGA 1 cut(s) 1060
XspI CTAG 6 cut(s) 197, 230, 440, 498, 1061, 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.