Rorug02G0092700

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017219
Physical Location & Seq
Forward (+)
7623742 .. 7626086
2345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0092700.1

Sequence Viewer

Length: 456 bp
ATGGTTGACTCAGTTCCAACGCAAGCGTATATACATAGCTGGAAACTTGTTATGCAATGGGATGATTCTGCAGCTAGGGAGGCATACTTCAATGCCAAAAACCGGTATTGGAGAAATTGTAATGGCCTTCCCAGCAACATACCATTGGCTAGTCCTGATGCTTACGTTGATGACATCAATTGGAGCGTTGTCTACTCCAGAAATCGATTGGAGCAGGCTTGTGATGAGGAGGACTACTCCAAAAAAGATACCAACAAGTACAAAAACATAGATAATAAAGAAAGTCAGGGTTATGGAGGGAATAATGTGGATAAGAAGAGAAGGAAATATGGTGATGGCTATTTGTACAACTTATTCAGACATTCAACCTCGAGAGGTCCCAGTGATCATGATCAGAAAGACCGATGGTGGCGGAGGAACATAGGAAGAAAATATGTTAGAGCTTATGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

151

Amino Acids

17.91

Weight (kDa)

9.11

Isoelectric Point (pI)

51.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017219)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12730
rosa_chinensis RchiOBHm_Chr2g0100791
rosa_laevigata RLG00000017010
rosa_multiflora Rmu_sc0001187.1_g000001 Rmu_sc0001659.1_g000017
rosa_roxburghii Rroxscaffold_2G00141860
rosa_rugosa Rorug02G0092700 Rorug02G0092700 Rorug02G0092800
rosa_samantha Rh2AG140500 Rh2BG145400 Rh2CG146300 Rh2DG145800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 192
AciI CCGC 1 cut(s) 412
AfaI GTAC 2 cut(s) 260, 347
AfiI CCNNNNNNNGG 1 cut(s) 102
AgeI ACCGGT 1 cut(s) 102
AgsI TTSAA 2 cut(s) 91, 366
AluBI AGCT 3 cut(s) 39, 74, 443
AluI AGCT 3 cut(s) 39, 74, 443
Ama87I CYCGRG 1 cut(s) 370
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 71
AsiGI ACCGGT 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 344
AvaI CYCGRG 1 cut(s) 370
AvaII GGWCC 1 cut(s) 377
BbvI GCAGC 1 cut(s) 83
BccI CCATC 3 cut(s) 329, 399, 443
BclI TGATCA 2 cut(s) 385, 391
BfaI CTAG 2 cut(s) 75, 150
BfmI CTRYAG 1 cut(s) 69
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 377
BmeT110I CYCGRG 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 1 cut(s) 379
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 375
BplI GAGNNNNNCTC 2 cut(s) 221, 253
BpmI CTGGAG 1 cut(s) 181
Bsa29I ATCGAT 1 cut(s) 205
BsaBI GATNNNNATC 1 cut(s) 390
BsaWI WCCGGW 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse118I RCCGGY 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 381
Bse3DI GCAATG 1 cut(s) 62
Bse8I GATNNNNATC 1 cut(s) 390
BseCI ATCGAT 1 cut(s) 205
BseGI GGATG 1 cut(s) 67
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 381
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 1 cut(s) 83
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 1 cut(s) 126
BshTI ACCGGT 1 cut(s) 102
BshVI ATCGAT 1 cut(s) 205
BsiHKCI CYCGRG 1 cut(s) 370
BsiSI CCGG 1 cut(s) 103
BslFI GGGAC 1 cut(s) 363
BslI CCNNNNNNNGG 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 363
BsnI GGCC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 370
Bsp1407I TGTACA 1 cut(s) 345
Bsp143I GATC 2 cut(s) 385, 391
BspACI CCGC 1 cut(s) 412
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 1 cut(s) 23
BspDI ATCGAT 1 cut(s) 205
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 379
BspMAI CTGCAG 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 102
BsrGI TGTACA 1 cut(s) 345
BsrI ACTGG 1 cut(s) 381
BssAI RCCGGY 1 cut(s) 102
BssMI GATC 2 cut(s) 385, 391
Bst6I CTCTTC 1 cut(s) 311
BstAUI TGTACA 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 24, 216
BstDEI CTNAG 1 cut(s) 10
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 2 cut(s) 388, 394
BstMBI GATC 2 cut(s) 385, 391
BstMWI GCNNNNNNNGC 2 cut(s) 80, 132
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 83
Bsu15I ATCGAT 1 cut(s) 205
BsuRI GGCC 1 cut(s) 126
BsuTUI ATCGAT 1 cut(s) 205
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 388
Cac8I GCNNGC 2 cut(s) 24, 216
CciI TCATGA 1 cut(s) 388
Cfr10I RCCGGY 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 377
ClaI ATCGAT 1 cut(s) 205
Csp6I GTAC 2 cut(s) 259, 346
CspAI ACCGGT 1 cut(s) 102
CviAII CATG 1 cut(s) 389
CviJI RGCY 7 cut(s) 39, 74, 126, 149, 218, 339, 443
CviKI_1 RGCY 7 cut(s) 39, 74, 126, 149, 218, 339, 443
CviQI GTAC 2 cut(s) 259, 346
DdeI CTNAG 1 cut(s) 10
DpnI GATC 2 cut(s) 387, 393
DpnII GATC 2 cut(s) 385, 391
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
EciI GGCGGA 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 377
Eco88I CYCGRG 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 377
FaeI CATG 1 cut(s) 392
FaqI GGGAC 1 cut(s) 363
FatI CATG 1 cut(s) 388
FbaI TGATCA 2 cut(s) 385, 391
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 2 cut(s) 75, 150
GluI GCNGC 1 cut(s) 72
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 181
HaeIII GGCC 1 cut(s) 126
HapII CCGG 1 cut(s) 103
Hin1II CATG 1 cut(s) 392
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 2 cut(s) 8, 65
HpaII CCGG 1 cut(s) 103
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 2 cut(s) 7, 193
Hpy188I TCNGA 2 cut(s) 359, 396
Hpy188III TCNNGA 4 cut(s) 155, 198, 372, 389
Hpy8I GTNNAC 2 cut(s) 7, 193
HpyAV CCTTC 2 cut(s) 137, 315
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 2 cut(s) 55, 71
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 132
HpyF3I CTNAG 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 1 cut(s) 392
Ksp22I TGATCA 2 cut(s) 385, 391
Kzo9I GATC 2 cut(s) 385, 391
LmnI GCTCC 2 cut(s) 183, 211
LpnPI CCDG 8 cut(s) 25, 116, 145, 168, 200, 211, 272, 394
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 1 cut(s) 148
MaeI CTAG 2 cut(s) 75, 150
MaeII ACGT 1 cut(s) 165
MalI GATC 2 cut(s) 387, 393
MboI GATC 2 cut(s) 385, 391
MboII GAAGA 2 cut(s) 328, 438
MfeI CAATTG 1 cut(s) 178
MluCI AATT 2 cut(s) 115, 178
MlyI GAGTC 1 cut(s) 2
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 7 cut(s) 73, 220, 223, 290, 368, 379, 408
MseI TTAA 1 cut(s) 454
MspI CCGG 1 cut(s) 103
MunI CAATTG 1 cut(s) 178
MwoI GCNNNNNNNGC 2 cut(s) 80, 132
NdeII GATC 2 cut(s) 385, 391
NlaIII CATG 1 cut(s) 392
NlaIV GGNNCC 1 cut(s) 379
PaeR7I CTCGAG 1 cut(s) 370
PagI TCATGA 1 cut(s) 388
PfeI GAWTC 1 cut(s) 65
PinAI ACCGGT 1 cut(s) 102
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PpuMI RGGWCCY 1 cut(s) 377
Psp5II RGGWCCY 1 cut(s) 377
PspFI CCCAGC 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 1 cut(s) 377
PspPPI RGGWCCY 1 cut(s) 377
PstI CTGCAG 1 cut(s) 73
RsaI GTAC 2 cut(s) 260, 347
RsaNI GTAC 2 cut(s) 259, 346
SaqAI TTAA 1 cut(s) 454
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 2 cut(s) 385, 391
Sau96I GGNCC 1 cut(s) 377
SchI GAGTC 1 cut(s) 2
SetI ASST 6 cut(s) 41, 76, 168, 371, 379, 445
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 1 cut(s) 69
Sfr274I CTCGAG 1 cut(s) 370
SinI GGWCC 1 cut(s) 377
SlaI CTCGAG 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
Sse9I AATT 2 cut(s) 115, 178
SsiI CCGC 1 cut(s) 412
SspMI CTAG 2 cut(s) 75, 150
TaiI ACGT 1 cut(s) 168
TaqI TCGA 2 cut(s) 205, 371
TaqII GACCGA 1 cut(s) 417
TasI AATT 2 cut(s) 115, 178
TatI WGTACW 2 cut(s) 258, 345
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 454
Tru9I TTAA 1 cut(s) 454
TscAI CASTG 1 cut(s) 388
TseI GCWGC 1 cut(s) 71
TspRI CASTG 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 377
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 2 cut(s) 75, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.