Rmu_sc0001187.1_g000001

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001187.1
OG0017219
Physical Location & Seq
Forward (+)
36 .. 1094
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001187.1_g000001.1.cds

Sequence Viewer

Length: 669 bp
atgacgactaataaggaaatcccttgggatcattctagtttccctgaaatcatctcccgatctattgatccggtgccccattattcctctccgtcagacctctaccgcagtctctgcgtttcccccatcttccttgacgaaggccatttgagctttgcgtatgatcgggtgactggtaaaaaatgctggatgctgggagccaggcttttacttattgatttggcagaaattccagaatactggaactggagttctgtacccgaatccaggttctcccaagtggctgagctcagatttgtatatagtcttaagatcaagggatccatagcgacatatatgttgtccccgagaacaacttatgtagcttaccttgtatataagtttccaaatatatctcgatctggttttcatgaaagccctgttagcttgcgtgtagtgcgtgtagttaatattcaacgcagagttgtagctcaacataatcgtgtcttcctgataggagatatggcttcacaagctcgaaggagaaatgatggatggatggagattgagttcggtgaaatctcctatattgaagataatgctactatagagtgtattctagagggatctgaaagttttgtgagaaaaagaggtctcattgtggaaggtattgagtttaggcctagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

222

Amino Acids

25.66

Weight (kDa)

7.74

Isoelectric Point (pI)

77.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017219)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12730
rosa_chinensis RchiOBHm_Chr2g0100791
rosa_laevigata RLG00000017010
rosa_multiflora Rmu_sc0001187.1_g000001 Rmu_sc0001659.1_g000017
rosa_roxburghii Rroxscaffold_2G00141860
rosa_rugosa Rorug02G0092700 Rorug02G0092700 Rorug02G0092800
rosa_samantha Rh2AG140500 Rh2BG145400 Rh2CG146300 Rh2DG145800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AciI CCGC 1 cut(s) 106
AclWI GGATC 5 cut(s) 36, 62, 315, 328, 613
AcsI RAATTY 1 cut(s) 228
AfaI GTAC 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 267
AflII CTTAAG 1 cut(s) 308
AgsI TTSAA 2 cut(s) 455, 572
AjnI CCWGG 2 cut(s) 200, 266
AloI GAACNNNNNNTCC 4 cut(s) 235, 267, 533, 565
AluBI AGCT 6 cut(s) 153, 289, 365, 426, 470, 515
AluI AGCT 6 cut(s) 153, 289, 365, 426, 470, 515
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 2 cut(s) 116, 638
AlwI GGATC 5 cut(s) 36, 62, 315, 328, 613
AlwNI CAGNNNCTG 1 cut(s) 114
Ama87I CYCGRG 1 cut(s) 346
AoxI GGCC 2 cut(s) 142, 659
ApoI RAATTY 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 181, 566
AvaI CYCGRG 1 cut(s) 346
BaeGI GKGCMC 1 cut(s) 78
BamHI GGATCC 1 cut(s) 320
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 291
BccI CCATC 4 cut(s) 134, 524, 528, 532
BciT130I CCWGG 2 cut(s) 202, 268
BcoDI GTCTC 2 cut(s) 116, 638
BfaI CTAG 3 cut(s) 36, 599, 663
BfmI CTRYAG 1 cut(s) 585
BfrI CTTAAG 1 cut(s) 308
BlpI GCTNAGC 1 cut(s) 285
Bme1390I CCNGG 2 cut(s) 202, 268
BmeT110I CYCGRG 1 cut(s) 346
BmiI GGNNCC 3 cut(s) 75, 199, 322
BmrFI CCNGG 2 cut(s) 202, 268
BmsI GCATC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 268
Bpu1102I GCTNAGC 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 638
BsaJI CCNNGG 1 cut(s) 23
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 3 cut(s) 178, 245, 251
BseBI CCWGG 2 cut(s) 202, 268
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 3 cut(s) 195, 539, 543
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 2 cut(s) 276, 304
BseNI ACTGG 3 cut(s) 178, 245, 251
BseSI GKGCMC 1 cut(s) 78
BseYI CCCAGC 1 cut(s) 193
BshFI GGCC 2 cut(s) 144, 661
BshNI GGYRCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 346
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 2 cut(s) 116, 638
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 2 cut(s) 144, 661
Bso31I GGTCTC 1 cut(s) 638
BsoBI CYCGRG 1 cut(s) 346
Bsp1286I GDGCHC 2 cut(s) 78, 291
Bsp143I GATC 8 cut(s) 28, 59, 67, 163, 312, 320, 398, 605
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 1 cut(s) 106
BspANI GGCC 2 cut(s) 144, 661
BspCNI CTCAG 2 cut(s) 277, 303
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 3 cut(s) 75, 199, 322
BspPI GGATC 5 cut(s) 36, 62, 315, 328, 613
BspT107I GGYRCC 1 cut(s) 73
BspTI CTTAAG 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 638
BsrI ACTGG 3 cut(s) 178, 245, 251
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 8 cut(s) 28, 59, 67, 163, 312, 320, 398, 605
BssT1I CCWWGG 1 cut(s) 23
Bst2UI CCWGG 2 cut(s) 202, 268
BstAFI CTTAAG 1 cut(s) 308
BstAPI GCANNNNNTGC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 428
BstDEI CTNAG 2 cut(s) 285, 290
BstF5I GGATG 3 cut(s) 195, 539, 543
BstKTI GATC 8 cut(s) 31, 62, 70, 166, 315, 323, 401, 608
BstMAI GTCTC 2 cut(s) 116, 638
BstMBI GATC 8 cut(s) 28, 59, 67, 163, 312, 320, 398, 605
BstMWI GCNNNNNNNGC 5 cut(s) 114, 150, 423, 436, 512
BstNI CCWGG 2 cut(s) 202, 268
BstSCI CCNGG 2 cut(s) 200, 266
BstSFI CTRYAG 1 cut(s) 585
BstSLI GKGCMC 1 cut(s) 78
BstV2I GAAGAC 1 cut(s) 478
BstX2I RGATCY 2 cut(s) 320, 605
BstXI CCANNNNNNTGG 1 cut(s) 240
BstYI RGATCY 2 cut(s) 320, 605
BsuRI GGCC 2 cut(s) 144, 661
BtsCI GGATG 3 cut(s) 195, 539, 543
Cac8I GCNNGC 1 cut(s) 428
CaiI CAGNNNCTG 1 cut(s) 114
CciI TCATGA 1 cut(s) 409
Csp6I GTAC 1 cut(s) 257
CviAII CATG 1 cut(s) 410
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 2 cut(s) 285, 290
DpnI GATC 8 cut(s) 30, 61, 69, 165, 314, 322, 400, 607
DpnII GATC 8 cut(s) 28, 59, 67, 163, 312, 320, 398, 605
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 23
Eco147I AGGCCT 1 cut(s) 661
Eco24I GRGCYC 1 cut(s) 291
Eco31I GGTCTC 1 cut(s) 638
Eco53kI GAGCTC 1 cut(s) 289
Eco88I CYCGRG 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 289
EcoRII CCWGG 2 cut(s) 200, 266
EcoT14I CCWWGG 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 1 cut(s) 413
FaqI GGGAC 1 cut(s) 328
FatI CATG 1 cut(s) 409
FokI GGATG 3 cut(s) 202, 546, 550
FriOI GRGCYC 1 cut(s) 291
FspBI CTAG 3 cut(s) 36, 599, 663
GsaI CCCAGC 1 cut(s) 197
GsuI CTGGAG 1 cut(s) 268
HaeIII GGCC 2 cut(s) 144, 661
HapII CCGG 1 cut(s) 71
Hin1II CATG 1 cut(s) 413
HinfI GANTC 1 cut(s) 263
HpaII CCGG 1 cut(s) 71
HphI GGTGA 2 cut(s) 181, 566
Hpy188I TCNGA 3 cut(s) 97, 293, 610
Hpy188III TCNNGA 6 cut(s) 57, 233, 396, 410, 490, 599
HpyAV CCTTC 3 cut(s) 134, 513, 638
HpyF10VI GCNNNNNNNGC 5 cut(s) 114, 150, 423, 436, 512
HpyF3I CTNAG 2 cut(s) 285, 290
Hsp92II CATG 1 cut(s) 413
Kzo9I GATC 8 cut(s) 28, 59, 67, 163, 312, 320, 398, 605
LmnI GCTCC 1 cut(s) 197
LweI GCATC 1 cut(s) 180
MaeI CTAG 3 cut(s) 36, 599, 663
MaeIII GTNAC 1 cut(s) 169
MalI GATC 8 cut(s) 30, 61, 69, 165, 314, 322, 400, 607
MboI GATC 8 cut(s) 28, 59, 67, 163, 312, 320, 398, 605
MboII GAAGA 3 cut(s) 121, 478, 584
MflI RGATCY 2 cut(s) 320, 605
MhlI GDGCHC 2 cut(s) 78, 291
MluCI AATT 1 cut(s) 228
MnlI CCTC 4 cut(s) 97, 110, 595, 623
MseI TTAA 2 cut(s) 309, 447
MslI CAYNNNNRTG 1 cut(s) 480
MspCI CTTAAG 1 cut(s) 308
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 2 cut(s) 202, 268
MvaI CCWGG 2 cut(s) 202, 268
MwoI GCNNNNNNNGC 5 cut(s) 114, 150, 423, 436, 512
NdeII GATC 8 cut(s) 28, 59, 67, 163, 312, 320, 398, 605
NlaIII CATG 1 cut(s) 413
NlaIV GGNNCC 3 cut(s) 75, 199, 322
NmuCI GTSAC 1 cut(s) 169
PagI TCATGA 1 cut(s) 409
PceI AGGCCT 1 cut(s) 661
PfeI GAWTC 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 2 cut(s) 200, 266
PspFI CCCAGC 1 cut(s) 193
PspGI CCWGG 2 cut(s) 200, 266
PspN4I GGNNCC 3 cut(s) 75, 199, 322
PstNI CAGNNNCTG 1 cut(s) 114
PsuI RGATCY 2 cut(s) 320, 605
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 480
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 309, 447
Sau3AI GATC 8 cut(s) 28, 59, 67, 163, 312, 320, 398, 605
ScrFI CCNGG 2 cut(s) 202, 268
SduI GDGCHC 2 cut(s) 78, 291
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 585
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 1 cut(s) 228
SseBI AGGCCT 1 cut(s) 661
SsiI CCGC 1 cut(s) 106
SspI AATATT 1 cut(s) 451
SspMI CTAG 3 cut(s) 36, 599, 663
SstI GAGCTC 1 cut(s) 291
StuI AGGCCT 1 cut(s) 661
StyD4I CCNGG 2 cut(s) 200, 266
StyI CCWWGG 1 cut(s) 23
TaqI TCGA 2 cut(s) 397, 517
TasI AATT 1 cut(s) 228
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 2 cut(s) 309, 447
Tru9I TTAA 2 cut(s) 309, 447
TseFI GTSAC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 2 cut(s) 398, 426
TspGWI ACGGA 1 cut(s) 81
Vha464I CTTAAG 1 cut(s) 308
XapI RAATTY 1 cut(s) 228
XbaI TCTAGA 1 cut(s) 598
XspI CTAG 3 cut(s) 36, 599, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.