Rorug02G0092800

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017219
Physical Location & Seq
Reverse (-)
7623756 .. 7627368
3613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0092800.1

Sequence Viewer

Length: 705 bp
ATGCAGCTTCGAGGAAATTACACAGACGCGTTAACGAGTTTTTGCCCAGCTTTGGCCATTTCAAGAGTGCAAAAATTGCAAATGGAGGTTAGGTTTTGGATGAATATTCTGAGCAGGGTTCAGCTTGCAAATTATGCGGACTTCTGTGTTGCGGACTACGCAGCCCCTCAAAGCCCTGCAGGCTACTCTTGCAAAAACCCTGCAAATGTTACGGTAGATGATTTTGTATACACTGGCCTTGAAGTTGCCGGCAATACCTCAAATATTATTAAAGCTGGACTCAAGCCAGCATTTGTTTCTCAGTTTCCTGGTCTGAATGGACTTGGCCTTTCACTGGCTCGGGCAGACTTGGCTGTTGGTGGAGTCGTCCCACTTCACACACACCAGAGAGCTACAGAAATCATACTTATTGTCGAAGGAACAGTAGTTGCCGGGTTCATTGACTCAAATAACAGAGTTTATTTAAAAACTCTGAAGAAGGGTGACATTATGGTTTTGCCTCCAGGGTTGTTTCACTTCCAAGTGAATGGAGGTGATACTCCAGTACTTGAATTTGCTGCCTTCAGTAGTGCAAACCCTGGTGTGCAGATTCTGGAGAATTCACTGTTTCAAAACGATTTACCTACAGAATTGATAGCACAGACTACATTCCTCGAAGCTGCTCAGATTAAGAAACTTAAGGGTTTTCTTGGTGGTACTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

234

Amino Acids

25.17

Weight (kDa)

6.28

Isoelectric Point (pI)

29.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 80 - 223 1.6e-36 Cupin
Cupin_2 PF07883 115 - 182 4.7e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017219)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12730
rosa_chinensis RchiOBHm_Chr2g0100791
rosa_laevigata RLG00000017010
rosa_multiflora Rmu_sc0001187.1_g000001 Rmu_sc0001659.1_g000017
rosa_roxburghii Rroxscaffold_2G00141860
rosa_rugosa Rorug02G0092700 Rorug02G0092700 Rorug02G0092800
rosa_samantha Rh2AG140500 Rh2BG145400 Rh2CG146300 Rh2DG145800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 228
AccII CGCG 1 cut(s) 29
AciI CCGC 2 cut(s) 137, 152
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 551, 598
AcuI CTGAAG 2 cut(s) 494, 547
AfaI GTAC 2 cut(s) 546, 697
AfiI CCNNNNNNNGG 2 cut(s) 52, 334
AflII CTTAAG 1 cut(s) 677
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 4 cut(s) 63, 242, 551, 611
AjnI CCWGG 3 cut(s) 307, 502, 577
AluBI AGCT 6 cut(s) 7, 50, 124, 275, 392, 659
AluI AGCT 6 cut(s) 7, 50, 124, 275, 392, 659
AlwNI CAGNNNCTG 1 cut(s) 592
Ama87I CYCGRG 1 cut(s) 339
AoxI GGCC 3 cut(s) 54, 235, 325
ApeKI GCWGC 4 cut(s) 4, 161, 557, 659
ApoI RAATTY 2 cut(s) 551, 598
AsuC2I CCSGG 1 cut(s) 433
AsuHPI GGTGA 2 cut(s) 494, 545
AvaI CYCGRG 1 cut(s) 339
BaeI ACNNNNGTAYC 2 cut(s) 528, 561
BalI TGGCCA 1 cut(s) 56
BbvI GCAGC 4 cut(s) 16, 173, 544, 646
BciT130I CCWGG 3 cut(s) 309, 504, 579
BcnI CCSGG 1 cut(s) 433
BfmI CTRYAG 3 cut(s) 177, 393, 624
BfrI CTTAAG 1 cut(s) 677
BglI GCCNNNNNGGC 1 cut(s) 180
BisI GCNGC 4 cut(s) 5, 162, 558, 660
BlsI GCNGC 4 cut(s) 6, 163, 559, 661
BmcAI AGTACT 1 cut(s) 546
Bme1390I CCNGG 4 cut(s) 309, 433, 504, 579
BmeT110I CYCGRG 1 cut(s) 339
BmrFI CCNGG 4 cut(s) 309, 433, 504, 579
BpmI CTGGAG 3 cut(s) 486, 525, 614
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 1 cut(s) 433
BsaJI CCNNGG 2 cut(s) 503, 577
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 334
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 3 cut(s) 238, 339, 542
BseBI CCWGG 3 cut(s) 309, 504, 579
BseDI CCNNGG 2 cut(s) 503, 577
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 52, 334
BseMII CTCAG 3 cut(s) 101, 314, 677
BseNI ACTGG 3 cut(s) 238, 339, 542
BseXI GCAGC 4 cut(s) 16, 173, 544, 646
BseYI CCCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 605
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 3 cut(s) 56, 237, 327
BsiHKCI CYCGRG 1 cut(s) 339
BsiSI CCGG 2 cut(s) 249, 432
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 52, 334
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 3 cut(s) 56, 237, 327
BsoBI CYCGRG 1 cut(s) 339
BspACI CCGC 2 cut(s) 137, 152
BspANI GGCC 3 cut(s) 56, 237, 327
BspCNI CTCAG 3 cut(s) 102, 313, 676
BspFNI CGCG 1 cut(s) 29
BspMAI CTGCAG 1 cut(s) 181
BspTI CTTAAG 1 cut(s) 677
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 3 cut(s) 238, 339, 542
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 503, 577
BssNAI GTATAC 1 cut(s) 229
Bst1107I GTATAC 1 cut(s) 229
Bst2UI CCWGG 3 cut(s) 309, 504, 579
Bst4CI ACNGT 3 cut(s) 214, 424, 606
BstAFI CTTAAG 1 cut(s) 677
BstAPI GCANNNNNTGC 2 cut(s) 76, 134
BstC8I GCNNGC 4 cut(s) 126, 181, 250, 288
BstDEI CTNAG 3 cut(s) 110, 300, 663
BstF5I GGATG 1 cut(s) 105
BstFNI CGCG 1 cut(s) 29
BstMWI GCNNNNNNNGC 6 cut(s) 76, 134, 158, 180, 189, 350
BstNI CCWGG 3 cut(s) 309, 504, 579
BstSCI CCNGG 4 cut(s) 307, 431, 502, 577
BstSFI CTRYAG 3 cut(s) 177, 393, 624
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 4 cut(s) 16, 173, 544, 646
BstXI CCANNNNNNTGG 1 cut(s) 527
BstZ17I GTATAC 1 cut(s) 229
BsuRI GGCC 3 cut(s) 56, 237, 327
BtsCI GGATG 1 cut(s) 105
BtsIMutI CAGTG 3 cut(s) 231, 332, 602
Cac8I GCNNGC 4 cut(s) 126, 181, 250, 288
CaiI CAGNNNCTG 1 cut(s) 592
Cfr10I RCCGGY 1 cut(s) 248
CseI GACGC 1 cut(s) 35
Csp6I GTAC 2 cut(s) 545, 696
CviQI GTAC 2 cut(s) 545, 696
DdeI CTNAG 3 cut(s) 110, 300, 663
DraI TTTAAA 1 cut(s) 465
EaeI YGGCCR 1 cut(s) 54
Eco57I CTGAAG 2 cut(s) 494, 547
Eco88I CYCGRG 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 598
EcoRII CCWGG 3 cut(s) 307, 502, 577
FaiI YATR 4 cut(s) 135, 229, 404, 491
FaqI GGGAC 1 cut(s) 353
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 4 cut(s) 5, 162, 558, 660
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 4 cut(s) 5, 162, 558, 660
GluI GCNGC 4 cut(s) 5, 162, 558, 660
GsaI CCCAGC 1 cut(s) 50
GsuI CTGGAG 3 cut(s) 486, 525, 614
HaeIII GGCC 3 cut(s) 56, 237, 327
HapII CCGG 2 cut(s) 249, 432
HgaI GACGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 4 cut(s) 279, 363, 443, 589
HpaI GTTAAC 1 cut(s) 33
HpaII CCGG 2 cut(s) 249, 432
HphI GGTGA 2 cut(s) 494, 545
Hpy166II GTNNAC 2 cut(s) 33, 229
Hpy188I TCNGA 4 cut(s) 111, 315, 474, 666
Hpy188III TCNNGA 2 cut(s) 63, 593
Hpy8I GTNNAC 2 cut(s) 33, 229
HpyAV CCTTC 3 cut(s) 410, 472, 571
HpyCH4III ACNGT 3 cut(s) 214, 424, 606
HpyCH4V TGCA 9 cut(s) 4, 70, 79, 128, 179, 192, 203, 572, 586
HpyF10VI GCNNNNNNNGC 6 cut(s) 76, 134, 158, 180, 189, 350
HpyF3I CTNAG 3 cut(s) 110, 300, 663
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
KspAI GTTAAC 1 cut(s) 33
Lsp1109I GCAGC 4 cut(s) 16, 173, 544, 646
MaeIII GTNAC 2 cut(s) 208, 482
MboII GAAGA 1 cut(s) 487
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 7 cut(s) 16, 74, 130, 551, 598, 629, 700
MluI ACGCGT 1 cut(s) 27
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 3 cut(s) 273, 372, 437
MnlI CCTC 7 cut(s) 5, 79, 177, 268, 510, 524, 662
Mox20I TGGCCA 1 cut(s) 56
MroNI GCCGGC 1 cut(s) 248
MscI TGGCCA 1 cut(s) 56
MseI TTAA 5 cut(s) 32, 270, 464, 669, 678
Msp20I TGGCCA 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 677
MspI CCGG 2 cut(s) 249, 432
MspR9I CCNGG 4 cut(s) 309, 433, 504, 579
MvaI CCWGG 3 cut(s) 309, 504, 579
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 6 cut(s) 76, 134, 158, 180, 189, 350
NaeI GCCGGC 1 cut(s) 250
NciI CCSGG 1 cut(s) 433
NgoMIV GCCGGC 1 cut(s) 248
NmuCI GTSAC 1 cut(s) 482
PdiI GCCGGC 1 cut(s) 250
PfeI GAWTC 1 cut(s) 589
PkrI GCNGC 4 cut(s) 6, 163, 559, 661
PleI GAGTC 3 cut(s) 273, 371, 437
PpsI GAGTC 3 cut(s) 273, 371, 437
Psp6I CCWGG 3 cut(s) 307, 502, 577
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 3 cut(s) 307, 502, 577
PstI CTGCAG 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 592
RsaI GTAC 2 cut(s) 546, 697
RsaNI GTAC 2 cut(s) 545, 696
SaqAI TTAA 5 cut(s) 32, 270, 464, 669, 678
SatI GCNGC 4 cut(s) 5, 162, 558, 660
SbfI CCTGCAGG 1 cut(s) 181
ScaI AGTACT 1 cut(s) 546
SchI GAGTC 3 cut(s) 273, 372, 437
ScrFI CCNGG 4 cut(s) 309, 433, 504, 579
SdaI CCTGCAGG 1 cut(s) 181
SfcI CTRYAG 3 cut(s) 177, 393, 624
SmlI CTYRAG 2 cut(s) 281, 677
SmoI CTYRAG 2 cut(s) 281, 677
Sse8387I CCTGCAGG 1 cut(s) 181
Sse9I AATT 7 cut(s) 16, 74, 130, 551, 598, 629, 700
SsiI CCGC 2 cut(s) 137, 152
SspI AATATT 2 cut(s) 106, 265
StyD4I CCNGG 4 cut(s) 307, 431, 502, 577
TaaI ACNGT 3 cut(s) 214, 424, 606
TaqI TCGA 3 cut(s) 10, 414, 654
TasI AATT 7 cut(s) 16, 74, 130, 551, 598, 629, 700
TatI WGTACW 1 cut(s) 544
TfiI GAWTC 1 cut(s) 589
Tru1I TTAA 5 cut(s) 32, 270, 464, 669, 678
Tru9I TTAA 5 cut(s) 32, 270, 464, 669, 678
TscAI CASTG 3 cut(s) 238, 339, 609
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 4 cut(s) 4, 161, 557, 659
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 2 cut(s) 116, 427
TspRI CASTG 3 cut(s) 238, 339, 609
Vha464I CTTAAG 1 cut(s) 677
XapI RAATTY 2 cut(s) 551, 598
XmiI GTMKAC 1 cut(s) 228
ZrmI AGTACT 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.