RLG00000017207

Domain of unknown function (DUF4228)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016731
Physical Location & Seq
Reverse (-)
14138382 .. 14139417
1036 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017207

Sequence Viewer

Length: 306 bp
ATGGGCGTCTGCGCTTCGTCTCCAACCATCAAGCTTAAGAGAAATGGAGGCAGAAGCAGTAGCAGACAAGAAGGAACAAGCTCGGACTTCATCGGACGTCCAAAAGGGATCTTCGTGATCGACGTGGACGGTGATCGGGTGCAAGAGTTGAAGCAACCTACCCAAGCCAGGGGGATCATTTCGCAGTATCCCAACCATGTTCTCTGCCCAGAATCCGCTTTCTCTACCGGAACTTTGTACTCTCGCGATAAAGGCCAGTTCTGCATTGGGGAAAAGATGATCAATTTCAGATTGGAGGCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

102

Amino Acids

11.13

Weight (kDa)

9.18

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016731)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14390
malus_domestica MD15G1272000.v1.1
pyrus_communis pycom15g23590
rosa_chinensis RchiOBHm_Chr2g0103101
rosa_laevigata RLG00000017207
rosa_multiflora Rmu_co8158798.1_g000001 Rmu_sc0000388.1_g000009
rosa_roxburghii Rroxscaffold_2G00139930
rosa_rugosa Rorug02G0112000
rosa_samantha Rh2AG160400 Rh2BG166900 Rh2CG167500 Rh2DG165900
rosa_wichuraiana Rw2G012560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 100
AccII CGCG 1 cut(s) 246
AciI CCGC 1 cut(s) 216
AclWI GGATC 2 cut(s) 116, 182
AcyI GRCGYC 2 cut(s) 6, 97
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 2 cut(s) 168, 169
AflII CTTAAG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 151
AjiI CACGTC 1 cut(s) 124
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 2 cut(s) 34, 81
AluI AGCT 2 cut(s) 34, 81
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 2 cut(s) 116, 182
AoxI GGCC 1 cut(s) 253
AspLEI GCGC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 143
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 169
BciVI GTATCC 1 cut(s) 198
BclI TGATCA 1 cut(s) 279
BcoDI GTCTC 1 cut(s) 24
BfrI CTTAAG 1 cut(s) 35
BfuI GTATCC 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 169
BmgBI CACGTC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 169
BsaHI GRCGYC 2 cut(s) 6, 97
BsaJI CCNNGG 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 227
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 169
Bse1I ACTGG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 168
BseLI CCNNNNNNNGG 2 cut(s) 168, 169
BseNI ACTGG 1 cut(s) 256
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 1 cut(s) 255
BsiSI CCGG 1 cut(s) 228
BslI CCNNNNNNNGG 2 cut(s) 168, 169
BsmAI GTCTC 1 cut(s) 24
BsmBI CGTCTC 1 cut(s) 24
BsnI GGCC 1 cut(s) 255
Bsp143I GATC 5 cut(s) 108, 117, 133, 174, 279
Bsp68I TCGCGA 1 cut(s) 246
BspACI CCGC 1 cut(s) 216
BspANI GGCC 1 cut(s) 255
BspFNI CGCG 1 cut(s) 246
BspPI GGATC 2 cut(s) 116, 182
BspTI CTTAAG 1 cut(s) 35
BsrI ACTGG 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 5 cut(s) 108, 117, 133, 174, 279
BssNI GRCGYC 2 cut(s) 6, 97
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 131
BstACI GRCGYC 2 cut(s) 6, 97
BstAFI CTTAAG 1 cut(s) 35
BstFNI CGCG 1 cut(s) 246
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 5 cut(s) 111, 120, 136, 177, 282
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 5 cut(s) 108, 117, 133, 174, 279
BstMWI GCNNNNNNNGC 2 cut(s) 252, 261
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 167
BstUI CGCG 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
BsuI GTATCC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 255
BtrI CACGTC 1 cut(s) 124
BtuMI TCGCGA 1 cut(s) 246
CfoI GCGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 238
CviAII CATG 1 cut(s) 197
CviJI RGCY 5 cut(s) 34, 81, 167, 255, 299
CviKI_1 RGCY 5 cut(s) 34, 81, 167, 255, 299
CviQI GTAC 1 cut(s) 238
DpnI GATC 5 cut(s) 110, 119, 135, 176, 281
DpnII GATC 5 cut(s) 108, 117, 133, 174, 279
EcoRII CCWGG 1 cut(s) 167
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 1 cut(s) 200
FaiI YATR 1 cut(s) 198
FatI CATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 279
GlaI GCGC 1 cut(s) 13
HaeIII GGCC 1 cut(s) 255
HapII CCGG 1 cut(s) 228
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 2 cut(s) 6, 97
Hin1II CATG 1 cut(s) 200
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 1 cut(s) 212
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 3 cut(s) 85, 95, 290
Hpy188III TCNNGA 2 cut(s) 115, 245
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 2 cut(s) 97, 123
HpyCH4V TGCA 2 cut(s) 142, 264
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 261
HpySE526I ACGT 2 cut(s) 97, 123
Hsp92I GRCGYC 2 cut(s) 6, 97
Hsp92II CATG 1 cut(s) 200
HspAI GCGC 1 cut(s) 12
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 5 cut(s) 108, 117, 133, 174, 279
LpnPI CCDG 5 cut(s) 154, 181, 222, 241, 269
MaeII ACGT 2 cut(s) 97, 123
MalI GATC 5 cut(s) 110, 119, 135, 176, 281
MboI GATC 5 cut(s) 108, 117, 133, 174, 279
MboII GAAGA 1 cut(s) 103
MflI RGATCY 1 cut(s) 108
MluCI AATT 1 cut(s) 283
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 2 cut(s) 41, 289
MseI TTAA 1 cut(s) 36
MspCI CTTAAG 1 cut(s) 35
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 169
MvaI CCWGG 1 cut(s) 169
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 2 cut(s) 252, 261
NdeII GATC 5 cut(s) 108, 117, 133, 174, 279
NlaIII CATG 1 cut(s) 200
NruI TCGCGA 1 cut(s) 246
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PsuI RGATCY 1 cut(s) 108
RruI TCGCGA 1 cut(s) 246
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SaqAI TTAA 1 cut(s) 36
Sau3AI GATC 5 cut(s) 108, 117, 133, 174, 279
ScrFI CCNGG 1 cut(s) 169
SetI ASST 5 cut(s) 36, 83, 100, 126, 160
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 1 cut(s) 283
SsiI CCGC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 2 cut(s) 100, 126
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 283
TatI WGTACW 1 cut(s) 237
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 79
Vha464I CTTAAG 1 cut(s) 35
XcmI CCANNNNNNNNNTGG 1 cut(s) 263
ZraI GACGTC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.