Rmu_co8158798.1_g000001

Domain of unknown function (DUF4228)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8158798.1
OG0016731
Physical Location & Seq
Reverse (-)
355 .. 659
305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8158798.1_g000001.1.cds

Sequence Viewer

Length: 305 bp
caagctcggactacatcggacgtccaaaagggatcgtcgtgatcgacgtggacggtgatcgggtgcaagagttgaagcaaccgacccaagccagggggatcatttcgcagtatcccaaccatgttctctgcaactccgaagccatgtccgtcggcacgtgcgcgcctcacttgcccgacgacgaggagcttcaacctggtcaaatttattttctggtgccactccgccaggcccagaatccgctttctctaccggaactttgtaatctcgcaataaaggccagttctgcactggcgaaaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

100

Amino Acids

10.9

Weight (kDa)

5.54

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016731)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14390
malus_domestica MD15G1272000.v1.1
pyrus_communis pycom15g23590
rosa_chinensis RchiOBHm_Chr2g0103101
rosa_laevigata RLG00000017207
rosa_multiflora Rmu_co8158798.1_g000001 Rmu_sc0000388.1_g000009
rosa_roxburghii Rroxscaffold_2G00139930
rosa_rugosa Rorug02G0112000
rosa_samantha Rh2AG160400 Rh2BG166900 Rh2CG167500 Rh2DG165900
rosa_wichuraiana Rw2G012560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
AccB1I GGYRCC 1 cut(s) 216
AccII CGCG 1 cut(s) 163
AciI CCGC 2 cut(s) 225, 241
AclWI GGATC 2 cut(s) 40, 106
AcsI RAATTY 1 cut(s) 203
AcvI CACGTG 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 21
AfiI CCNNNNNNNGG 2 cut(s) 92, 93
AgsI TTSAA 2 cut(s) 75, 193
AjiI CACGTC 1 cut(s) 48
AjnI CCWGG 3 cut(s) 91, 195, 227
AluBI AGCT 2 cut(s) 5, 189
AluI AGCT 2 cut(s) 5, 189
AlwI GGATC 2 cut(s) 40, 106
AoxI GGCC 2 cut(s) 230, 278
ApoI RAATTY 1 cut(s) 203
AspLEI GCGC 2 cut(s) 163, 165
AspS9I GGNCC 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 67
BanI GGYRCC 1 cut(s) 216
BbrPI CACGTG 1 cut(s) 158
BciT130I CCWGG 3 cut(s) 93, 197, 229
BciVI GTATCC 1 cut(s) 122
BfuI GTATCC 1 cut(s) 122
Bme1390I CCNGG 3 cut(s) 93, 197, 229
BmgBI CACGTC 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 3 cut(s) 93, 197, 229
BsaAI YACGTR 1 cut(s) 158
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 92
BsaWI WCCGGW 1 cut(s) 252
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 93
Bse1I ACTGG 2 cut(s) 281, 296
BseBI CCWGG 3 cut(s) 93, 197, 229
BseDI CCNNGG 1 cut(s) 92
BseLI CCNNNNNNNGG 2 cut(s) 92, 93
BseNI ACTGG 2 cut(s) 281, 296
BsePI GCGCGC 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 199
BsgI GTGCAG 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 163
BshFI GGCC 2 cut(s) 232, 280
BshNI GGYRCC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 253
BslI CCNNNNNNNGG 2 cut(s) 92, 93
BsnI GGCC 2 cut(s) 232, 280
Bsp143I GATC 4 cut(s) 32, 41, 57, 98
BspACI CCGC 2 cut(s) 225, 241
BspANI GGCC 2 cut(s) 232, 280
BspFNI CGCG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 218
BspPI GGATC 2 cut(s) 40, 106
BspT107I GGYRCC 1 cut(s) 216
BsrI ACTGG 2 cut(s) 281, 296
BssECI CCNNGG 1 cut(s) 92
BssHII GCGCGC 1 cut(s) 161
BssMI GATC 4 cut(s) 32, 41, 57, 98
BssNI GRCGYC 1 cut(s) 21
Bst2UI CCWGG 3 cut(s) 93, 197, 229
Bst4CI ACNGT 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 163
BstFNI CGCG 1 cut(s) 163
BstHHI GCGC 2 cut(s) 163, 165
BstKTI GATC 4 cut(s) 35, 44, 60, 101
BstMBI GATC 4 cut(s) 32, 41, 57, 98
BstMWI GCNNNNNNNGC 3 cut(s) 171, 277, 286
BstNI CCWGG 3 cut(s) 93, 197, 229
BstSCI CCNGG 3 cut(s) 91, 195, 227
BstUI CGCG 1 cut(s) 163
BsuI GTATCC 1 cut(s) 122
BsuRI GGCC 2 cut(s) 232, 280
BtrI CACGTC 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 163
CfoI GCGC 2 cut(s) 163, 165
Cfr13I GGNCC 1 cut(s) 231
CsiI ACCWGGT 1 cut(s) 195
CviAII CATG 2 cut(s) 121, 144
CviJI RGCY 6 cut(s) 5, 91, 142, 189, 232, 280
CviKI_1 RGCY 6 cut(s) 5, 91, 142, 189, 232, 280
DpnI GATC 4 cut(s) 34, 43, 59, 100
DpnII GATC 4 cut(s) 32, 41, 57, 98
EciI GGCGGA 1 cut(s) 214
Eco72I CACGTG 1 cut(s) 158
EcoRII CCWGG 3 cut(s) 91, 195, 227
FaeI CATG 2 cut(s) 124, 147
FaiI YATR 2 cut(s) 122, 145
FatI CATG 2 cut(s) 120, 143
GlaI GCGC 2 cut(s) 162, 164
HaeIII GGCC 2 cut(s) 232, 280
HapII CCGG 1 cut(s) 253
HhaI GCGC 2 cut(s) 163, 165
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 2 cut(s) 124, 147
Hin6I GCGC 2 cut(s) 161, 163
HinP1I GCGC 2 cut(s) 161, 163
HinfI GANTC 1 cut(s) 237
HpaII CCGG 1 cut(s) 253
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 3 cut(s) 9, 19, 138
Hpy188III TCNNGA 1 cut(s) 39
Hpy8I GTNNAC 1 cut(s) 51
Hpy99I CGWCG 5 cut(s) 40, 49, 154, 181, 184
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 3 cut(s) 21, 47, 157
HpyCH4V TGCA 3 cut(s) 66, 131, 289
HpyF10VI GCNNNNNNNGC 3 cut(s) 171, 277, 286
HpySE526I ACGT 3 cut(s) 21, 47, 157
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 124, 147
HspAI GCGC 2 cut(s) 161, 163
Kzo9I GATC 4 cut(s) 32, 41, 57, 98
LmnI GCTCC 1 cut(s) 186
MabI ACCWGGT 1 cut(s) 195
MaeII ACGT 3 cut(s) 21, 47, 157
MalI GATC 4 cut(s) 34, 43, 59, 100
MboI GATC 4 cut(s) 32, 41, 57, 98
MluCI AATT 1 cut(s) 203
MnlI CCTC 2 cut(s) 176, 177
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 3 cut(s) 93, 197, 229
MvaI CCWGG 3 cut(s) 93, 197, 229
MvnI CGCG 1 cut(s) 163
MwoI GCNNNNNNNGC 3 cut(s) 171, 277, 286
NdeII GATC 4 cut(s) 32, 41, 57, 98
NlaIII CATG 2 cut(s) 124, 147
NlaIV GGNNCC 1 cut(s) 218
PauI GCGCGC 1 cut(s) 161
PcsI WCGNNNNNNNCGW 2 cut(s) 41, 44
PfeI GAWTC 1 cut(s) 237
PmaCI CACGTG 1 cut(s) 158
PmlI CACGTG 1 cut(s) 158
Ppu21I YACGTR 1 cut(s) 158
Psp6I CCWGG 3 cut(s) 91, 195, 227
PspCI CACGTG 1 cut(s) 158
PspGI CCWGG 3 cut(s) 91, 195, 227
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 1 cut(s) 231
PteI GCGCGC 1 cut(s) 161
Sau3AI GATC 4 cut(s) 32, 41, 57, 98
Sau96I GGNCC 1 cut(s) 231
ScrFI CCNGG 3 cut(s) 93, 197, 229
SetI ASST 6 cut(s) 7, 24, 50, 160, 191, 198
SexAI ACCWGGT 1 cut(s) 195
Sse9I AATT 1 cut(s) 203
SsiI CCGC 2 cut(s) 225, 241
StyD4I CCNGG 3 cut(s) 91, 195, 227
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 3 cut(s) 24, 50, 160
TaqI TCGA 1 cut(s) 44
TasI AATT 1 cut(s) 203
TfiI GAWTC 1 cut(s) 237
TscAI CASTG 1 cut(s) 296
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 1 cut(s) 296
XapI RAATTY 1 cut(s) 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
ZraI GACGTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.